cluster # 5384

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Anopheles gambiae
cluster # 5384 cluster # 5384 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5384#0 length = 1008 sequences # 3

consensus_5384#1 length = 447 sequences # 1

consensusID : consensus_5384#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1008
fasta sequence

                              [GGCCAGATGGCGAGGAGAAAAGAAACATAGTGCGATCGTGGCCTCACATTACAACAAGCTGGAGGATCGTGGACTGGTTGCTCG-GAAAAAGTCGAACATCTACTTTATGCGCAACTTCAACAACTGGATCAAAAGCGTGGTCATAGACAAGTACACCACGCTGGTGAAGGGCAGGACACCGCTCGGCTCACCGTTCCGGGTGTTGGATATGTGCTGCGGGAAGGGCGGCGATCTGATCAAATGGGCCAACGCGAACGTGACGCACCTGATCTGCACGGACATTGCGCAGGTCAGCCTGGAGCAGTGCGAGAATCGCTTCAACACAATGGACCAATGGTCGCGGGACAGTCAGCGCCGGCCGAAGGTGGAGTTTTTCGCGGCCGATGCGACGCTGCAGCAGCTCCGCACCAAGTACCGCGATCCCTCGATCAAGCTGCACCTGGTGAGCTGCCAGTTTGCGTTTCACTACTCGTTCGAGTCGTTCAAGCAGGCGGACTGCATGTTTAAGAACGCGGCCGAATGTCTGGAGGAGGGCTTCTACTTCATCGGCACGATGCCGGACGCGAACGAAATCATGAAGCGGCAGCGAAGGGCCATGTCGGACACGTTCGGCAACGATATCTACCGCATCCAGTTCCTGTGCGATACGGACAATCCGCCGCTGTTCGGGGGCCAAGGTACAACTTTCAGCTCGATGAGGGTGGTGGACTGTCCCCGAGTTTCTGGTCCACTTTCCCACGTTCGAAAAGGCTTGCGCT-AAGCACGGTTTGCGGGCTTGTGG-GAGCAAGGGAAACCGGGTTCGAAAGAAGTTGTTTGGACGGAAAAACACAGGNAGGCCGGGAAAAGCCAGGGACACTGNTTGGGGAGCAAGAATGNCCAGGGCNGCTAAGAAACATTTGTATCCCCAGACCANACCGGAAACCGGGGCCGCGGTTCACCCGGGGGGACCACCCCACGCGGAAAAAGCCCGGAACACAGGATTNANGCCNTGCCGAGGAGATNCACGAG]

[+] EMBL BX467616             [GGCCAGATGGCGAGGAGAAAAGAAACATAGTGCGATCGTGGCCTCACATTACAACAAGCTGGAGGATCGTGGACTGGTTGCTCG GAAAAAGTCGAACATCTACTTTATGCGCAACTTCAACAACTGGATCAAAAGCGTGGTCATAGACAAGTACACCACGCTGGTGAAGGGCAGGACACCGCTCGGCTCACCGTTCCGGGTGTTGGATATGTGCTGCGGGAAGGGCGGCGATCTGATCAAATGGGCCAACGCGAACGTGACGCACCTGATCTGCACGGACATTGCGCAGGTCAGCCTGGAGCAGTGCGAGAATCGCTTCAACACAATGGACCAATGGTCGCGGGACAGTCAGCGCCGGCCGAAGGTGGAGTTTTTCGCGGCCGATGCGACGCTGCAGCAGCTCCGCACCAAGTACCGCGATCCCTCGATCAAGCTGCACCTGGTGAGCTGCCAGTTTGCGTTTCACTACTCGTTCGAGTCGTTCAAGCAGGCGGACTGCATGTTTAAGAACGCGGCCGAATGTCTGGAGGAGGGCTTCTACTTCATCGGCACGATGCCGGACGCGAACGAAATCATGAAGCGGCAGCGAAGGGCCATGTCGGACACGTTCGGCAACGATATCTACCGCATCCAGTTCCTGTGCGATACGGACAATCCGCCGCTGTTCGGGGGCCAAGGTACAACTTTCAGCTCGATGAGGGTGGTGGACTGTCCCCGAGTTTCTGGTCCACTTTCCCACGTTCGAAAAGGCTTGCGCT AAGCACGGTTTGCGGGCTTGTGG GAGCAAGGGAAACCGGGTTCGAAAGAAGTTGTTTGGACGGAAAAACACAGGNAGGCCGGGAAAAGCCAGGGACACTGNTTGGGGAGCAAGAATGNCCAGGGCNGCTAAGAAACATTTGTATCCCCAGACCANACCGGAAACCGGGGCCGCGGTTCACCCGGGGGGACCACCCCACGCGGAAAAAGCCCGGAACACAGGATTNANGCCNTGCCGAGGAGATNCACGAG]
[+] EMBL BM602992             [                            AGTGCGATCGTGGCCTCGCATTACAACAAGCTGGAGGATCGTGGACTGGTTGCTCGCGAAAAAGACCAACATCTACTTTATGCGCAACTTCAACAACTGGATCACAAGCGTGGTCATAGACAAGTACACCACGCTGGTGAAGGGCAGGACACCGCTCGGCTCACCGTTCCGGGTGTTGGATATGTGCTGCGGGAAAGGCGGCGATCTGATCAAATGGGCTAACGCGAACGTGACGCACCTGATCTGCACGGACATTGCGCAGGTCAGCCTGGAGCAGTGCGAGAATCGCTTCAACACAATGGACCAATGGTCGCGGGACAGTCAGCGCCGGCCGAAGGTGGAGTTTTTCGCGGCCGATGCGACCCTGCAGCAGCTCCGCACCAAGTACCGCGATCCCTCGATCAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BM579047             [                                                                                                                       ccgAACTGGATCAAAAGCGTGGTCATAGACAAGTACACCACGCTGGTGAAGGGCAGGACACCGCTCGGCTCACCGTTCCGGGTGTTGGATATGTGCTGCGGGAAGGGCGGCGATCTGATCAAATGGGCCAACGCGAACGTGACGCACCTGATCTGCACGGACATTGCGCAGGTCAGCCTGGAGCAGTGCGAGAATCGCTTCAACACAATGGACCAATGGTCGCGGGACAGTCAGCGCCGGCCGAAGGTGGAGTTTTTCGCGGCCGATGCGACGCTGCAGCAGCTCCGCACCAAGTACCGCGATCCCTCGATCAAGCTGCACCTGGTGAGCTGCCAGTTTGCGTTTCACTACTCGTTCGAGTCGTTCAAGCAGGCGGACTGCATGTTTAAGAACGCGGCCGAATGTCTGGAGGAGGGCTTCTACTTCATCGGCACGATGCCGGACGCGAACGAAATCATGAAGCGGCAGCGAAGGGCCATGTCGGACACGTTCGGCAACGATATCTACCGCATCCAGTTCCTGTGCGATACGGACAATCCGCCGCTGTTC GGGGCCAA GTACAACTTTCAGCTCGATGA GGTGGTGGACTGT CCCGAGTTTCTGGTCCACTTTCCCACGTTCGAAAA GCTGGCGCTGAAGCACGGTTTGC GGCTGGTGGAGAG                                                                                                                                                                                                                                ]




>consensus_5384#0
GGCCAGATGGCGAGGAGAAAAGAAACATAGTGCGATCGTGGCCTCACATTACAACAAGCT
GGAGGATCGTGGACTGGTTGCTCGGAAAAAGTCGAACATCTACTTTATGCGCAACTTCAA
CAACTGGATCAAAAGCGTGGTCATAGACAAGTACACCACGCTGGTGAAGGGCAGGACACC
GCTCGGCTCACCGTTCCGGGTGTTGGATATGTGCTGCGGGAAGGGCGGCGATCTGATCAA
ATGGGCCAACGCGAACGTGACGCACCTGATCTGCACGGACATTGCGCAGGTCAGCCTGGA
GCAGTGCGAGAATCGCTTCAACACAATGGACCAATGGTCGCGGGACAGTCAGCGCCGGCC
GAAGGTGGAGTTTTTCGCGGCCGATGCGACGCTGCAGCAGCTCCGCACCAAGTACCGCGA
TCCCTCGATCAAGCTGCACCTGGTGAGCTGCCAGTTTGCGTTTCACTACTCGTTCGAGTC
GTTCAAGCAGGCGGACTGCATGTTTAAGAACGCGGCCGAATGTCTGGAGGAGGGCTTCTA
CTTCATCGGCACGATGCCGGACGCGAACGAAATCATGAAGCGGCAGCGAAGGGCCATGTC
GGACACGTTCGGCAACGATATCTACCGCATCCAGTTCCTGTGCGATACGGACAATCCGCC
GCTGTTCGGGGGCCAAGGTACAACTTTCAGCTCGATGAGGGTGGTGGACTGTCCCCGAGT
TTCTGGTCCACTTTCCCACGTTCGAAAAGGCTTGCGCTAAGCACGGTTTGCGGGCTTGTG
GGAGCAAGGGAAACCGGGTTCGAAAGAAGTTGTTTGGACGGAAAAACACAGGNAGGCCGG
GAAAAGCCAGGGACACTGNTTGGGGAGCAAGAATGNCCAGGGCNGCTAAGAAACATTTGT
ATCCCCAGACCANACCGGAAACCGGGGCCGCGGTTCACCCGGGGGGACCACCCCACGCGG
AAAAAGCCCGGAACACAGGATTNANGCCNTGCCGAGGAGATNCACGAG

consensusID : consensus_5384#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 447
fasta sequence

                              [TCGCCAGTAGACGCAGAGTCGTGCACAGTATTTATTAGTATTTTTATTATTTAATCGTAGTTTTGCCAGTATNCCCAATCATGTCNGACTCCGAAGAAAGCAGTACGGCCCGACGCACACCACAGATACGGAGGAACAAACGCCCAGAGGGGGGCGAAAATGGAGAAAAGAAACATATGCGATCGTGGCTCACATTTACAACCAAGCTTGGAGGATCGTGGACTGGTTGCTCCGAAAAAGTTGAACATCTAATTTATGCGCCACTTCCAACAACTGGGATCAAAAGCGTGGTCATAGACAAGTACACCACGCTGGTGAAGGGCAGGACACCGCTCGGCTCACCGTTCCGGGTGTTGGATATGTGCTGCGGGAAGGGCGGCGATCTGATCACAATGGGCCAACGCGCAACGTGACGCACCTGATCTGCACGGACATTGCGCAGGTCAG]

[+] EMBL AL932591             [TCGCCAGTAGACGCAGAGTCGTGCACAGTATTTATTAGTATTTTTATTATTTAATCGTAGTTTTGCCAGTATNCCCAATCATGTCNGACTCCGAAGAAAGCAGTACGGCCCGACGCACACCACAGATACGGAGGAACAAACGCCCAGAGGGGGGCGAAAATGGAGAAAAGAAACATATGCGATCGTGGCTCACATTTACAACCAAGCTTGGAGGATCGTGGACTGGTTGCTCCGAAAAAGTTGAACATCTAATTTATGCGCCACTTCCAACAACTGGGATCAAAAGCGTGGTCATAGACAAGTACACCACGCTGGTGAAGGGCAGGACACCGCTCGGCTCACCGTTCCGGGTGTTGGATATGTGCTGCGGGAAGGGCGGCGATCTGATCACAATGGGCCAACGCGCAACGTGACGCACCTGATCTGCACGGACATTGCGCAGGTCAG]




>consensus_5384#1
TCGCCAGTAGACGCAGAGTCGTGCACAGTATTTATTAGTATTTTTATTATTTAATCGTAG
TTTTGCCAGTATNCCCAATCATGTCNGACTCCGAAGAAAGCAGTACGGCCCGACGCACAC
CACAGATACGGAGGAACAAACGCCCAGAGGGGGGCGAAAATGGAGAAAAGAAACATATGC
GATCGTGGCTCACATTTACAACCAAGCTTGGAGGATCGTGGACTGGTTGCTCCGAAAAAG
TTGAACATCTAATTTATGCGCCACTTCCAACAACTGGGATCAAAAGCGTGGTCATAGACA
AGTACACCACGCTGGTGAAGGGCAGGACACCGCTCGGCTCACCGTTCCGGGTGTTGGATA
TGTGCTGCGGGAAGGGCGGCGATCTGATCACAATGGGCCAACGCGCAACGTGACGCACCT
GATCTGCACGGACATTGCGCAGGTCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5384#0      ------------------------------------------------------------
consensus_5384#1      TCGCCAGTAGACGCAGAGTCGTGCACAGTATTTATTAGTATTTTTATTATTTAATCGTAG 60
                                                                                  

consensus_5384#0      ------------------------------------------------------------
consensus_5384#1      TTTTGCCAGTATNCCCAATCATGTCNGACTCCGAAGAAAGCAGTACGGCCCGACGCACAC 120
                                                                                  

consensus_5384#0      ---------------------GGCCAGATGGCGA-------GGAGAAAAGAAACATAGTG 32
consensus_5384#1      CACAGATACGGAGGAACAAACGCCCAGAGGGGGGCGAAAATGGAGAAAAGAAACATA-TG 179
                                           * ***** ** *        **************** **

consensus_5384#0      CGATCGTGGCCTCACATT-ACAAC-AAGCT-GGAGGATCGTGGACTGGTTGCTCGGAAAA 89
consensus_5384#1      CGATCGTGGC-TCACATTTACAACCAAGCTTGGAGGATCGTGGACTGGTTGCTCCGAAAA 238
                      ********** ******* ***** ***** *********************** *****

consensus_5384#0      AGTCGAACATCTACTTTATGCGCAACTTC-AACAACTGG-ATCAAAAGCGTGGTCATAGA 147
consensus_5384#1      AGTTGAACATCTAATTTATGCGCCACTTCCAACAACTGGGATCAAAAGCGTGGTCATAGA 298
                      *** ********* ********* ***** ********* ********************

consensus_5384#0      CAAGTACACCACGCTGGTGAAGGGCAGGACACCGCTCGGCTCACCGTTCCGGGTGTTGGA 207
consensus_5384#1      CAAGTACACCACGCTGGTGAAGGGCAGGACACCGCTCGGCTCACCGTTCCGGGTGTTGGA 358
                      ************************************************************

consensus_5384#0      TATGTGCTGCGGGAAGGGCGGCGATCTGATCA-AATGGGCCAACGCG-AACGTGACGCAC 265
consensus_5384#1      TATGTGCTGCGGGAAGGGCGGCGATCTGATCACAATGGGCCAACGCGCAACGTGACGCAC 418
                      ******************************** ************** ************

consensus_5384#0      CTGATCTGCACGGACATTGCGCAGGTCAGCCTGGAGCAGTGCGAGAATCGCTTCAACACA 325
consensus_5384#1      CTGATCTGCACGGACATTGCGCAGGTCAG------------------------------- 447
                      *****************************                               

consensus_5384#0      ATGGACCAATGGTCGCGGGACAGTCAGCGCCGGCCGAAGGTGGAGTTTTTCGCGGCCGAT 385
consensus_5384#1      ------------------------------------------------------------
                                                                                  

consensus_5384#0      GCGACGCTGCAGCAGCTCCGCACCAAGTACCGCGATCCCTCGATCAAGCTGCACCTGGTG 445
consensus_5384#1      ------------------------------------------------------------
                                                                                  

consensus_5384#0      AGCTGCCAGTTTGCGTTTCACTACTCGTTCGAGTCGTTCAAGCAGGCGGACTGCATGTTT 505
consensus_5384#1      ------------------------------------------------------------
                                                                                  

consensus_5384#0      AAGAACGCGGCCGAATGTCTGGAGGAGGGCTTCTACTTCATCGGCACGATGCCGGACGCG 565
consensus_5384#1      ------------------------------------------------------------
                                                                                  

consensus_5384#0      AACGAAATCATGAAGCGGCAGCGAAGGGCCATGTCGGACACGTTCGGCAACGATATCTAC 625
consensus_5384#1      ------------------------------------------------------------
                                                                                  

consensus_5384#0      CGCATCCAGTTCCTGTGCGATACGGACAATCCGCCGCTGTTCGGGGGCCAAGGTACAACT 685
consensus_5384#1      ------------------------------------------------------------
                                                                                  

consensus_5384#0      TTCAGCTCGATGAGGGTGGTGGACTGTCCCCGAGTTTCTGGTCCACTTTCCCACGTTCGA 745
consensus_5384#1      ------------------------------------------------------------
                                                                                  

consensus_5384#0      AAAGGCTTGCGCTAAGCACGGTTTGCGGGCTTGTGGGAGCAAGGGAAACCGGGTTCGAAA 805
consensus_5384#1      ------------------------------------------------------------
                                                                                  

consensus_5384#0      GAAGTTGTTTGGACGGAAAAACACAGGNAGGCCGGGAAAAGCCAGGGACACTGNTTGGGG 865
consensus_5384#1      ------------------------------------------------------------
                                                                                  

consensus_5384#0      AGCAAGAATGNCCAGGGCNGCTAAGAAACATTTGTATCCCCAGACCANACCGGAAACCGG 925
consensus_5384#1      ------------------------------------------------------------
                                                                                  

consensus_5384#0      GGCCGCGGTTCACCCGGGGGGACCACCCCACGCGGAAAAAGCCCGGAACACAGGATTNAN 985
consensus_5384#1      ------------------------------------------------------------
                                                                                  

consensus_5384#0      GCCNTGCCGAGGAGATNCACGAG 1008
consensus_5384#1      -----------------------