cluster # 5389

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Anopheles gambiae
cluster # 5389 cluster # 5389 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5389#0 length = 852 sequences # 2

consensus_5389#1 length = 710 sequences # 1
consensus_5389#2 length = 512 sequences # 1

consensusID : consensus_5389#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 852
fasta sequence

                              [AGGCCAAGAATTCGGCACGATTGGGCTATTTCAACACGTACTCACACTTTGGCATCCATCACGATATGTTGAGCGACGAGGTGCGCACATCCAGCTACCGCGATGCGATCCTGCGGAATGCCGACATAGTGAAGGATAAAACCGTGCTAGATCTGGGCTGCGGTACGGCCATCCTGTCGATGTTTGCATCGAAGGGCGGGAGCGAAGGAGGTCATCTCGGTCGATCAGTCCGACATCATCTACCAGGCGATGGACATTGTGCGGAAGAACAGCATCGAGAACATACGGTTCGTGAAGGGCCGGCTGGAGGACACGGAGCTGCCGGTGGAAAAGGTCGACATTATCGTGTCCGAGTGGATGGGCTACTTCCTGCTGTTCGAGGGCATGATGGACAGCGTGATTTATGCCCGCAAGCAGTACCTGCGCGAGGGAGGCCTCATATTGCCGAACCGCTGCAACATTAGCATCGCCGGGTACGGCGACCTCGAGCGGCACAACGAGTTCATCGGCTTCTGGAAGAACGTGTACGGGTTCGATATGTCGTGCATGAAGAAGGAGGTGCTGCGGGAAGCGACGGTCGAGGTGTGCAAACCGGAGCACATCATTACGAACGCGAACATCATTGCCAACTTCGACCTGATGGAGGTCGATGTCGACTGTCCGAACTTTAGCTACGACTTCGAGCTGAAGGTGAAACGGGACACACAGCTGACCGCCATCATCGGATACTTTGACACGTTCTTCGAGCTGCCGGAGCACATCGAATTTTCCACCTCGCCGTACTCGCGGCCGACCCACTGGAAGCAGACCATTTTCTACCTGGANGAACCGGTCCCGGTGCGGGANGGGCAA]

[+] EMBL BX468491             [AGGCCAAGAATTCGGCACGATTGGGCTATTTCAACACGTACTCACACTTTGGCATCCATCACGATATGTTGAGCGACGAGGTGCGCACATCCAGCTACCGCGATGCGATCCTGCGGAATGCCGACATAGTGAAGGATAAAACCGTGCTAGATCTGGGCTGCGGTACGGCCATCCTGTCGATGTTTGCATCGAAGGGCGGGAGCGAAGGAGGTCATCTCGGTCGATCAGTCCGACATCATCTACCAGGCGATGGACATTGTGCGGAAGAACAGCATCGAGAACATACGGTTCGTGAAGGGCCGGCTGGAGGACACGGAGCTGCCGGTGGAAAAGGTCGACATTATCGTGTCCGAGTGGATGGGCTACTTCCTGCTGTTCGAGGGCATGATGGACAGCGTGATTTATGCCCGCAAGCAGTACCTGCGCGAGGGAGGCCTCATATTGCCGAACCGCTGCAACATTAGCATCGCCGGGTACGGCGACCTCGAGCGGCACAACGA                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL BX625449             [                                                                              AGGTGCGCACATCCAGCTACCGCGATGCGATCCTGCGGAATGCCGACATAGTGAAGGATAAAACCGTGCTAGATCTGGGCTGCGGTACGGCCATCCTGTCGATGTTTGCATCGAA GGCGGGAGCGAAGGAGGTCATCTCGGTCGATCAGTCCGACATCATCTACCAGGCGATGGACATTGTGCGGAAGAACAGCATCGAGAACATACGGTTCGTGAAGGGCCGGCTGGAGGACACGGAGCTGCCGGTGGAAAACGTCGACATTATCGTGTCCGAGTGGATGGGCTACTTCCTGCTGTTCGAGGGCATGATGGACAGCGTGATTTATGCCCGCAAGCAGTACCT CGCGAGGGTGGCCTCATATTGCCGAACCGCTGCAACATTAGCATCGCCGGGTACGGCGACCTCGAGCGGCACAACGAGTTCATCGGCTTCTGGAAGAACGTGTACGGGTTCGATATGTCGTGCATGAAGAAGGAGGTGCTGCGGGAAGCGACGGTCGAGGTGTGCAAACCGGAGCACATCATTACGAACGCGAACATCATTGCCAACTTCGACCTGATGGAGGTCGATGTCGACTGTCCGAACTTTAGCTACGACTTCGAGCTGAAGGTGAAACGGGACACACAGCTGACCGCCATCATCGGATACTTTGACACGTTCTTCGAGCTGCCGGAGCACATCGAATTTTCCACCTCGCCGTACTCGCGGCCGACCCACTGGAAGCAGACCATTTTCTACCTGGANGAACCGGTCCCGGTGCGGGANGGGCAA]




>consensus_5389#0
AGGCCAAGAATTCGGCACGATTGGGCTATTTCAACACGTACTCACACTTTGGCATCCATC
ACGATATGTTGAGCGACGAGGTGCGCACATCCAGCTACCGCGATGCGATCCTGCGGAATG
CCGACATAGTGAAGGATAAAACCGTGCTAGATCTGGGCTGCGGTACGGCCATCCTGTCGA
TGTTTGCATCGAAGGGCGGGAGCGAAGGAGGTCATCTCGGTCGATCAGTCCGACATCATC
TACCAGGCGATGGACATTGTGCGGAAGAACAGCATCGAGAACATACGGTTCGTGAAGGGC
CGGCTGGAGGACACGGAGCTGCCGGTGGAAAAGGTCGACATTATCGTGTCCGAGTGGATG
GGCTACTTCCTGCTGTTCGAGGGCATGATGGACAGCGTGATTTATGCCCGCAAGCAGTAC
CTGCGCGAGGGAGGCCTCATATTGCCGAACCGCTGCAACATTAGCATCGCCGGGTACGGC
GACCTCGAGCGGCACAACGAGTTCATCGGCTTCTGGAAGAACGTGTACGGGTTCGATATG
TCGTGCATGAAGAAGGAGGTGCTGCGGGAAGCGACGGTCGAGGTGTGCAAACCGGAGCAC
ATCATTACGAACGCGAACATCATTGCCAACTTCGACCTGATGGAGGTCGATGTCGACTGT
CCGAACTTTAGCTACGACTTCGAGCTGAAGGTGAAACGGGACACACAGCTGACCGCCATC
ATCGGATACTTTGACACGTTCTTCGAGCTGCCGGAGCACATCGAATTTTCCACCTCGCCG
TACTCGCGGCCGACCCACTGGAAGCAGACCATTTTCTACCTGGANGAACCGGTCCCGGTG
CGGGANGGGCAA

consensusID : consensus_5389#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 710
fasta sequence

                              [GAATCGCCACGAGNTGTAGCACGGTGGGGTGTCGGGGNGAGAAAGAAACCGGCAGTGACCTCGGTGATACGATGACGCTTACCACCGACCAGTACCGAAAATTGCAGGGGCATCATTAACGATCTGTCGGCACAGCTGCGGGAGAAGGAGAATCTGCTTCAGCATGCCGCCAGCAGCATCGAAAAGATGAAGGAAAGCTTTCGCAACGTGCTGGCGGATCAGCAGCAGCAGCAGCAACCGAACGGGAAGGAAAATGGGAAAGCCGGTACGGAGGAGGGTGCCGAGGGCGATAAAAAGCTTGAACAGATCAAGCGAAAGCTCGAGCATTGCGTGAGCAGCGTTTCGGTCGATGACGATCAGAGCTATTTCAACACGTACTCACACTTTGGCATCCATCACGATATGTTGAGCGACGAGGTGCGCACATCCAGCGTACCGCGATGCGATCCTGCGGAATGCCGACATAGTGAAGGATAAAACCGTGTTAGATCTGGGCTGTGGTACGGCCATCCTGTCGATGTTTGCATCGAAGGCGGGAGCGAAGGAGGTCATCTCGGTCGATCAGTCCGACGATCATCTACCAGGCGATGGACATTGTGCGGAAGAACAGGATCGAGGAACATACGGTTCGTGAAAGGCCGGCTGGAGGACACGGAGGCTGTCGGTGGNAAAAGGTCGACATTATCGTGTCGAAGTGGATGGGCTAACTT]

[+] EMBL BX469197             [GAATCGCCACGAGNTGTAGCACGGTGGGGTGTCGGGGNGAGAAAGAAACCGGCAGTGACCTCGGTGATACGATGACGCTTACCACCGACCAGTACCGAAAATTGCAGGGGCATCATTAACGATCTGTCGGCACAGCTGCGGGAGAAGGAGAATCTGCTTCAGCATGCCGCCAGCAGCATCGAAAAGATGAAGGAAAGCTTTCGCAACGTGCTGGCGGATCAGCAGCAGCAGCAGCAACCGAACGGGAAGGAAAATGGGAAAGCCGGTACGGAGGAGGGTGCCGAGGGCGATAAAAAGCTTGAACAGATCAAGCGAAAGCTCGAGCATTGCGTGAGCAGCGTTTCGGTCGATGACGATCAGAGCTATTTCAACACGTACTCACACTTTGGCATCCATCACGATATGTTGAGCGACGAGGTGCGCACATCCAGCGTACCGCGATGCGATCCTGCGGAATGCCGACATAGTGAAGGATAAAACCGTGTTAGATCTGGGCTGTGGTACGGCCATCCTGTCGATGTTTGCATCGAAGGCGGGAGCGAAGGAGGTCATCTCGGTCGATCAGTCCGACGATCATCTACCAGGCGATGGACATTGTGCGGAAGAACAGGATCGAGGAACATACGGTTCGTGAAAGGCCGGCTGGAGGACACGGAGGCTGTCGGTGGNAAAAGGTCGACATTATCGTGTCGAAGTGGATGGGCTAACTT]




>consensus_5389#1
GAATCGCCACGAGNTGTAGCACGGTGGGGTGTCGGGGNGAGAAAGAAACCGGCAGTGACC
TCGGTGATACGATGACGCTTACCACCGACCAGTACCGAAAATTGCAGGGGCATCATTAAC
GATCTGTCGGCACAGCTGCGGGAGAAGGAGAATCTGCTTCAGCATGCCGCCAGCAGCATC
GAAAAGATGAAGGAAAGCTTTCGCAACGTGCTGGCGGATCAGCAGCAGCAGCAGCAACCG
AACGGGAAGGAAAATGGGAAAGCCGGTACGGAGGAGGGTGCCGAGGGCGATAAAAAGCTT
GAACAGATCAAGCGAAAGCTCGAGCATTGCGTGAGCAGCGTTTCGGTCGATGACGATCAG
AGCTATTTCAACACGTACTCACACTTTGGCATCCATCACGATATGTTGAGCGACGAGGTG
CGCACATCCAGCGTACCGCGATGCGATCCTGCGGAATGCCGACATAGTGAAGGATAAAAC
CGTGTTAGATCTGGGCTGTGGTACGGCCATCCTGTCGATGTTTGCATCGAAGGCGGGAGC
GAAGGAGGTCATCTCGGTCGATCAGTCCGACGATCATCTACCAGGCGATGGACATTGTGC
GGAAGAACAGGATCGAGGAACATACGGTTCGTGAAAGGCCGGCTGGAGGACACGGAGGCT
GTCGGTGGNAAAAGGTCGACATTATCGTGTCGAAGTGGATGGGCTAACTT

consensusID : consensus_5389#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 512
fasta sequence

                              [TCGNCCAGNGTATCACACTTTGGCATCATCACGATATTTGAGCGACGAGGTGCGCACATCCACTACCGCGATGCGATCCTGCGGAATGCCGACATANTTAAAGNTAAAAACGTGCTAAATCTTGGCTGCGGTACGGCCATCCTGTCGATGTTGCATCAAGCGGGAGCNAAGAGGNCATCTCCGCGACACGATTATCTAACCACGATGGACATTGTGCGGAAGAACAGCATCAAACNTACNGGTCGTGAAAGGCCCGCTGGAGTGACACGGAGCTGCCGCGTGTGAAAAGTGTCGACATTATCCGTGTCCCGAGGTTTGATTTGGCGTACATTCCCTGGCGTTGGTTCCGAANGGGGCNCACTTTAATTGTGAACAACGCGGTTGATTTATTNCCCCGNCAAGCCACGTACCTGCGCGAGAGGGTGTGGGCTCCATAATTTTGGCCGAAAACCGGGTTGCGAAACATTNACCAATTCGGCCCGGGGTAACGGGGGAAACCTCCGAAGGCNGGG]

[+] EMBL AL932670             [TCGNCCAGNGTATCACACTTTGGCATCATCACGATATTTGAGCGACGAGGTGCGCACATCCACTACCGCGATGCGATCCTGCGGAATGCCGACATANTTAAAGNTAAAAACGTGCTAAATCTTGGCTGCGGTACGGCCATCCTGTCGATGTTGCATCAAGCGGGAGCNAAGAGGNCATCTCCGCGACACGATTATCTAACCACGATGGACATTGTGCGGAAGAACAGCATCAAACNTACNGGTCGTGAAAGGCCCGCTGGAGTGACACGGAGCTGCCGCGTGTGAAAAGTGTCGACATTATCCGTGTCCCGAGGTTTGATTTGGCGTACATTCCCTGGCGTTGGTTCCGAANGGGGCNCACTTTAATTGTGAACAACGCGGTTGATTTATTNCCCCGNCAAGCCACGTACCTGCGCGAGAGGGTGTGGGCTCCATAATTTTGGCCGAAAACCGGGTTGCGAAACATTNACCAATTCGGCCCGGGGTAACGGGGGAAACCTCCGAAGGCNGGG]




>consensus_5389#2
TCGNCCAGNGTATCACACTTTGGCATCATCACGATATTTGAGCGACGAGGTGCGCACATC
CACTACCGCGATGCGATCCTGCGGAATGCCGACATANTTAAAGNTAAAAACGTGCTAAAT
CTTGGCTGCGGTACGGCCATCCTGTCGATGTTGCATCAAGCGGGAGCNAAGAGGNCATCT
CCGCGACACGATTATCTAACCACGATGGACATTGTGCGGAAGAACAGCATCAAACNTACN
GGTCGTGAAAGGCCCGCTGGAGTGACACGGAGCTGCCGCGTGTGAAAAGTGTCGACATTA
TCCGTGTCCCGAGGTTTGATTTGGCGTACATTCCCTGGCGTTGGTTCCGAANGGGGCNCA
CTTTAATTGTGAACAACGCGGTTGATTTATTNCCCCGNCAAGCCACGTACCTGCGCGAGA
GGGTGTGGGCTCCATAATTTTGGCCGAAAACCGGGTTGCGAAACATTNACCAATTCGGCC
CGGGGTAACGGGGGAAACCTCCGAAGGCNGGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5389#0      ------------------------------------------------------------
consensus_5389#2      ------------------------------------------------------------
consensus_5389#1      GAATCGCCACGAGNTGTAGCACGGTGGGGTGTCGGGGNGAGAAAGAAACCGGCAGTGACC 60
                                                                                  

consensus_5389#0      ------------------------------------------------------------
consensus_5389#2      ------------------------------------------------------------
consensus_5389#1      TCGGTGATACGATGACGCTTACCACCGACCAGTACCGAAAATTGCAGGGGCATCATTAAC 120
                                                                                  

consensus_5389#0      ------------------------------------------------------------
consensus_5389#2      ------------------------------------------------------------
consensus_5389#1      GATCTGTCGGCACAGCTGCGGGAGAAGGAGAATCTGCTTCAGCATGCCGCCAGCAGCATC 180
                                                                                  

consensus_5389#0      ------------------------------------------------------------
consensus_5389#2      ------------------------------------------------------------
consensus_5389#1      GAAAAGATGAAGGAAAGCTTTCGCAACGTGCTGGCGGATCAGCAGCAGCAGCAGCAACCG 240
                                                                                  

consensus_5389#0      ------------------------------------------------------------
consensus_5389#2      ------------------------------------------------------------
consensus_5389#1      AACGGGAAGGAAAATGGGAAAGCCGGTACGGAGGAGGGTGCCGAGGGCGATAAAAAGCTT 300
                                                                                  

consensus_5389#0      ------------------------------------AGGCCAAGAATTCGGCACGATTGG 24
consensus_5389#2      ------------------------------------------------------------
consensus_5389#1      GAACAGATCAAGCGAAAGCTCGAGCATTGCGTGAGCAGCGTTTCGGTCGATGACGATCAG 360
                                                                                  

consensus_5389#0      -GCTATTTCAACACGTAC-TCACACTTTGGCATCCATCACGATATGTTGAGCGACGAGGT 82
consensus_5389#2      -------TCGNCCAGNGTATCACACTTTGGCATC-ATCACGATAT-TTGAGCGACGAGGT 51
consensus_5389#1      AGCTATTTCAACACGTAC-TCACACTTTGGCATCCATCACGATATGTTGAGCGACGAGGT 419
                             **  *  *    *************** ********** **************

consensus_5389#0      GCGCACATCCAGC-TACCGCGATGCGATCCTGCGGAATGCCGACATAGTGAAGGATAAAA 141
consensus_5389#2      GCGCACATCCA-C-TACCGCGATGCGATCCTGCGGAATGCCGACATANTTAAAGNTAAAA 109
consensus_5389#1      GCGCACATCCAGCGTACCGCGATGCGATCCTGCGGAATGCCGACATAGTGAAGGATAAAA 479
                      *********** * ********************************* * ** * *****

consensus_5389#0      CCGTGCTAGATCTGGGCTGCGGTACGGCCATCCTGTCGATGTTTGCATCGAAGGGCGGGA 201
consensus_5389#2      ACGTGCTAAATCTTGGCTGCGGTACGGCCATCCTGTCGATGTT-GCATCAA---GCGGGA 165
consensus_5389#1      CCGTGTTAGATCTGGGCTGTGGTACGGCCATCCTGTCGATGTTTGCATCGAAG-GCGGGA 538
                       **** ** **** ***** *********************** ***** *   ******

consensus_5389#0      GCGAAGGAGGTCATCTCGGTCGATCAGTCCGAC-ATCATCTACCAGGCGATGGACATTGT 260
consensus_5389#2      GCNAAG-AGGNCATCTCCG-----CGACACGA---TTATCTAACCA-CGATGGACATTGT 215
consensus_5389#1      GCGAAGGAGGTCATCTCGGTCGATCAGTCCGACGATCATCTACCAGGCGATGGACATTGT 598
                      ** *** *** ****** *     *    ***   * ***** *   *************

consensus_5389#0      GCGGAAGAACAGCATCGAG-AACATACGGTTCGTGAAGGGCCGGCTGGAG-GACACGGAG 318
consensus_5389#2      GCGGAAGAACAGCATCA---AACNTACNGGTCGTGAAAGGCCCGCTGGAGTGACACGGAG 272
consensus_5389#1      GCGGAAGAACAGGATCGAGGAACATACGGTTCGTGAAAGGCCGGCTGGAG-GACACGGAG 657
                      ************ ***    *** *** * ******* **** ******* *********

consensus_5389#0      -CTGCCG---GTGGAAAAGGTCGACATTATC-GTGTCCGAGTGGATGGGCTACTTCCTGC 373
consensus_5389#2      -CTGCCGCGTGTGAAAAGTGTCGACATTATCCGTGTCCCGAGGTTTGATTTGG--CGTAC 329
consensus_5389#1      GCTGTCGG--TGGNAAAAGGTCGACATTATC-GTGTCGAAGTGGATGGGCTAACTT---- 710
                       *** **     * ***  ************ *****     *  **   *         

consensus_5389#0      TGTTCGAGGGCATGATGGACAGCGTGATTTATGCCCGCAAGCAGTACCTGCGCGAGGGAG 433
consensus_5389#2      ATTCCCTGGCGTTGGTTCCGAANGGGGCNCA---CTTTAATTGTGAACAACGCGGTTGAT 386
consensus_5389#1      ------------------------------------------------------------
                                                                                  

consensus_5389#0      GCCTCATATTGCCGAACCGCTGCAACATTAGCATCGCCGGGTACGGCGACCTCGAGCGGC 493
consensus_5389#2      TTATTNCCCCGNCAAGCCAC----GTACCTGCGCGAGAGGGTGTGGGCTCCATAATTTTG 442
consensus_5389#1      ------------------------------------------------------------
                                                                                  

consensus_5389#0      ACAACGAGTTCATCGGCTTCTGGAAGAACGTGTACGGGTTCGATATGTCGTGCATGAAGA 553
consensus_5389#2      GCCGAAA----ACCGGGTTGCGAAA---CATTNACCAATTCGGCCCGGGGT------AAC 489
consensus_5389#1      ------------------------------------------------------------
                                                                                  

consensus_5389#0      AGGAGGTGCTGCGGGAAGCGACGGTCGAGGTGTGCAAACCGGAGCACATCATTACGAACG 613
consensus_5389#2      GGGGGAAACCTCCGAAGGCNGGG------------------------------------- 512
consensus_5389#1      ------------------------------------------------------------
                                                                                  

consensus_5389#0      CGAACATCATTGCCAACTTCGACCTGATGGAGGTCGATGTCGACTGTCCGAACTTTAGCT 673
consensus_5389#2      ------------------------------------------------------------
consensus_5389#1      ------------------------------------------------------------
                                                                                  

consensus_5389#0      ACGACTTCGAGCTGAAGGTGAAACGGGACACACAGCTGACCGCCATCATCGGATACTTTG 733
consensus_5389#2      ------------------------------------------------------------
consensus_5389#1      ------------------------------------------------------------
                                                                                  

consensus_5389#0      ACACGTTCTTCGAGCTGCCGGAGCACATCGAATTTTCCACCTCGCCGTACTCGCGGCCGA 793
consensus_5389#2      ------------------------------------------------------------
consensus_5389#1      ------------------------------------------------------------
                                                                                  

consensus_5389#0      CCCACTGGAAGCAGACCATTTTCTACCTGGANGAACCGGTCCCGGTGCGGGANGGGCAA 852
consensus_5389#2      -----------------------------------------------------------
consensus_5389#1      -----------------------------------------------------------