These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5390#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 888 fasta sequence [GCGTAAAACACACCGTATACGCCGCCGCCGCCGGAAGCGCACTTGTTCTCTCGCGTATTACATTGAAACGTTCCACGCCACGCCGTGAACTCTGTGCTCTGTTCTGTGCCTGTGCTGTCGGATCGGATCATGCCGATGCCGTCGAACGAGCTGCGAAAGCTGCCGGAAGTGTGACTGCGTACGTGTGTGGAAGATGTGTGAATATTCGAATACGCGCAACAAGATGAGCAACCTGGTCGTCGTCCTCGTCCTGCTGACGATGTACATTGTGCTTTCGGCCCCATTCGAAATACCGGACCGGTACAAAAAGCCGGCTAAAATGTTGCACGAAATTTGCATCGCCGAGTCGGGCGCCTCGGAGGAGCAGCTGCGCACCTGCCTCGATGGAACCGTACCGACAGCTCCGGCCGCCAAGTGCTACATCCACTGCCTGTTCGACAAGATCGACGTGGTGGACGAGGCGACTGGGCGCATCCTGCTCGACCGACTGCTTTACATCATCCCGGACGACGTGAAGGCAGCGGTGGACCATTTAACGCGCGAATGTAGCCACATCGTAACGCCGGATAAGTGCGAAACCGCCTACGAGACGGTCAAATGTTATTTCAATGCGCGCGACGAGGTGATCAAATTCTGCCACCTACTAGTGCTGGAGTGAATCGGCAGCACGTGACCAACGTTGCCAATGTGTTTGTTTTACCTTTCTATCTCACTTAATGTACAGTTTCAGCATTAGCGATACGTTTGCAGCTCCATGCTAGCGAAGGCAATATTGCTTTAGGTTTAACAGTAAAGGACAACCAACGGTACAGGACCCATGTGATTTGTGTTATAAGACTATACATTAATCAGCTATTAATCATTTCAGAAAAAAAAAAAAAAAAAAAA] [+] EMBL AF437890 [GCGTAAAACACACCGTATACGCCGCCGCCGCCGGAAGCGCACTTGTTCTCTCGCGTATTACATTGAAACGTTCCACGCCACGCCGTGAACTCTGTGCTCTGTTCTGTGCCTGTGCTGTCGGATCGGATCATGCCGATGCCGTCGAACGAGCTGCGAAAGCTGCCGGAAGTGTGACTGCGTACGTGTGTGGAAGATGTGTGAATATTCGAATACGCGCAACAAGATGAGCAACCTGGTCGTCGTCCTCGTCCTGCTGACGATGTACATTGTGCTTTCGGCCCCATTCGAAATACCGGACCGGTACAAAAAGCCGGCTAAAATGTTGCACGAAATTTGCATCGCCGAGTCGGGCGCCTCGGAGGAGCAGCTGCGCACCTGCCTCGATGGAACCGTACCGACAGCTCCGGCCGCCAAGTGCTACATCCACTGCCTGTTCGACAAGATCGACGTGGTGGACGAGGCGACTGGGCGCATCCTGCTCGACCGACTGCTTTACATCATCCCGGACGACGTGAAGGCAGCGGTGGACCATTTAACGCGCGAATGTAGCCACATCGTAACGCCGGATAAGTGCGAAACCGCCTACGAGACGGTCAAATGTTATTTCAATGCGCGCGACGAGGTGATCAAATTCTGCCACCTACTAGTGCTGGAGTGAATCGGCAGCACGTGACCAACGTTGCCAATGTGTTTGTTTTACCTTTCTATCTCACTTAATGTACAGTTTCAGCATTAGCGATACGTTTGCAGCTCCATGCTAGCGAAGGCAATATTGCTTTAGGTTTAACAGTAAAGGACAACCAACGGTACAGGACCCATGTGATTTGTGTTATAAGACTATACATTAATCAGCTATTAATCATTTCAGAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_5390#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 796 fasta sequence [AGAATCGCCCGAGGTTAAGACAGCGTGTTTCCATNTGAACTANGCATGTGTAAAATGAACGAGAATCGCACCGTCTCGAACAGTTCGGTAAAGTGCACGANCGAACGAGGTTTCTCTAACAAANAGAACGACCAGGACTTTCTTGGAAGAAACTGACTACACCGAACGCGTTCGAACTATGTTCGATCTGTGTTCTGTTGGTGTATAAATCGTACCTACACAACTGAATTCATCGAACGCGTTCAAACGGATTAGTCACTTGTTCGCGAATGAACTGAACTGAATTGATTGCGCTCATCATGTNGATCCATATTTAAACTAATTNCTGTNTNACCAATCCTTGGAGTGTGTATAAGGGCATGGGGTACAATATACGCAGGAGACATTTTCTGCTCGTATTAGTANCNACATGCTAGTTTTCGGTCGGCTTGCGATGGATTGTGTTGACCAGACAGCCGAGTGTNCAACTGTTCTCANAACTTATTGGTNNAACCGCCGAATTACTAGTACTTGGCTACNAGTATGCGTCTATGGTGGNTAAATGNCACACAGATTNCACGAGCGTTCTTTTGCTAGACTAAATAACGTCTCGATGTAANACAGACGAAACGAANGAATCNGTCGCTTTCGCCGTACCGGGTCCCTTCNTGGGTGAGCGGACACCTTAANTTCGATGAGGTCCGGTGCACAACGGAATNCGGNTCTGGCCCATGCCTAATTTGAAACATCCAGATGCGGCGCTGTGNAGCTTGTTCCGTGGGANTGTCTCAAGTACAGGGGNAGGTAGNCAGGAATC] [+] EMBL AL934491 [AGAATCGCCCGAGGTTAAGACAGCGTGTTTCCATNTGAACTANGCATGTGTAAAATGAACGAGAATCGCACCGTCTCGAACAGTTCGGTAAAGTGCACGANCGAACGAGGTTTCTCTAACAAANAGAACGACCAGGACTTTCTTGGAAGAAACTGACTACACCGAACGCGTTCGAACTATGTTCGATCTGTGTTCTGTTGGTGTATAAATCGTACCTACACAACTGAATTCATCGAACGCGTTCAAACGGATTAGTCACTTGTTCGCGAATGAACTGAACTGAATTGATTGCGCTCATCATGTNGATCCATATTTAAACTAATTNCTGTNTNACCAATCCTTGGAGTGTGTATAAGGGCATGGGGTACAATATACGCAGGAGACATTTTCTGCTCGTATTAGTANCNACATGCTAGTTTTCGGTCGGCTTGCGATGGATTGTGTTGACCAGACAGCCGAGTGTNCAACTGTTCTCANAACTTATTGGTNNAACCGCCGAATTACTAGTACTTGGCTACNAGTATGCGTCTATGGTGGNTAAATGNCACACAGATTNCACGAGCGTTCTTTTGCTAGACTAAATAACGTCTCGATGTAANACAGACGAAACGAANGAATCNGTCGCTTTCGCCGTACCGGGTCCCTTCNTGGGTGAGCGGACACCTTAANTTCGATGAGGTCCGGTGCACAACGGAATNCGGNTCTGGCCCATGCCTAATTTGAAACATCCAGATGCGGCGCTGTGNAGCTTGTTCCGTGGGANTGTCTCAAGTACAGGGGNAGGTAGNCAGGAATC] consensusID : consensus_5390#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 515 fasta sequence [AATCGCCCGAGGTTACGCCGTCGCCGGAAGCGCACTTGTTCTCTCGCGTATTACATTGAAACGTTCCACGCCGTAGCGTGAAATCTGTGCTCTGTTCTGTGCCTGTGCTGTCGAATCGGATCATGCCGATGCCGTCGAACGAGCTGCGAAAGCTGCCGGAAGTGTGACTGCGTACGTGTGTGGAAGATGTGTGAATATTCGAATACGCGCAACAAGATGAGCAACCTGGTCGTCGTCCTCGTCCTGCTGACGATGTACATTGTGCTTTCGGCCCCATTCGAAATACCGGACCGGTACAAAAAGCCGGCTAAAATGTTGCACGAAATTTGTATCGCCGAGTCGGGCGCCTCGGAGGAGCAGCTGCGCACCTGTCTCGATGGAACCGTACCGACAGCTCCGGCCGCCAAGTGCTACATCCACTGCCTGTTCGACAAGATCGACGTGGTGGACGAGGCGACTGGGCGCATCCTGCTCGACCGACTGCTTTACATCATCCCGGACGACGTGAAGGCAGC] [+] EMBL AL932683 [AATCGCCCGAGGTTACGCCGTCGCCGGAAGCGCACTTGTTCTCTCGCGTATTACATTGAAACGTTCCACGCCGTAGCGTGAAATCTGTGCTCTGTTCTGTGCCTGTGCTGTCGAATCGGATCATGCCGATGCCGTCGAACGAGCTGCGAAAGCTGCCGGAAGTGTGACTGCGTACGTGTGTGGAAGATGTGTGAATATTCGAATACGCGCAACAAGATGAGCAACCTGGTCGTCGTCCTCGTCCTGCTGACGATGTACATTGTGCTTTCGGCCCCATTCGAAATACCGGACCGGTACAAAAAGCCGGCTAAAATGTTGCACGAAATTTGTATCGCCGAGTCGGGCGCCTCGGAGGAGCAGCTGCGCACCTGTCTCGATGGAACCGTACCGACAGCTCCGGCCGCCAAGTGCTACATCCACTGCCTGTTCGACAAGATCGACGTGGTGGACGAGGCGACTGGGCGCATCCTGCTCGACCGACTGCTTTACATCATCCCGGACGACGTGAAGGCAGC] consensusID : consensus_5390#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 410 fasta sequence [GAGGAATAAATGTACACACTTTAAGCCGGTTTTCGGTGTTAGAGAAATTTTGGCAATCATTTTATCGCGTAGCATTGCGAGTAGGCATGTGTAAAATGAACGAGAATCGCACCGTTCGAACAGTTCGGTAAAGTGCACGAACGAACGAGGTTCTTAACAAAAAGAACGACCAGGACTTTTGGAAGAAACTGACTACACCGAACGCGTTCGAACGTTCCGTTCAGTGTTCGACGGCACACATAAATGTGCCATTCGAAATACCGGACCGGTACAAAAAGCCGGCTAAAATGTTGCACGAAATTTGTATCGCCGAGTCGGGCGCCTCGGAGGAGCAGCTGCGCACCTGTCTCGATGGAACCGTACCGACAGCTCCGGCCGCCAAGTGCTACATCCACTGCCTGTTCGACAAG] [+] EMBL BX614457 [GAGGAATAAATGTACACACTTTAAGCCGGTTTTCGGTGTTAGAGAAATTTTGGCAATCATTTTATCGCGTAGCATTGCGAGTAGGCATGTGTAAAATGAACGAGAATCGCACCGTTCGAACAGTTCGGTAAAGTGCACGAACGAACGAGGTTCTTAACAAAAAGAACGACCAGGACTTTTGGAAGAAACTGACTACACCGAACGCGTTCGAACGTTCCGTTCAGTGTTCGACGGCACACATAAATGTGCCATTCGAAATACCGGACCGGTACAAAAAGCCGGCTAAAATGTTGCACGAAATTTGTATCGCCGAGTCGGGCGCCTCGGAGGAGCAGCTGCGCACCTGTCTCGATGGAACCGTACCGACAGCTCCGGCCGCCAAGTGCTACATCCACTGCCTGTTCGACAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5390#0 GCGTAAAACACACCGTATACGCCGCCGCCGC---CGGAAGCGCACTTGTTCTCTCGCGTA 57 consensus_5390#2 -------AATCGCCCGAGGTTACGCCGTCGC---CGGAAGCGCACTTGTTCTCTCGCGTA 50 consensus_5390#3 -------------------------GAGGAA---TAAATGTACACACTTTAAGCCGGTTT 32 consensus_5390#1 -----AGAATCGCCCGAGGTTAAGACAGCGTGTTTCCATNTGAACTANGCATGTGTAAAA 55 * ** consensus_5390#0 TTA-C----ATTGAAACGTTCCACGCCACGCCGTGAACTCTGTGCTCTGTTCTGTGCCTG 112 consensus_5390#2 TTA-C----ATTGAAACGTTCCACGCCGTAGCGTGAAATCTGTGCTCTGTTCTGTGCCTG 105 consensus_5390#3 TCGGT----GTTAGAGAAATTTTGGCAATCATTTTA---TCGCGTAGCATTGCGAGTAGG 85 consensus_5390#1 TGAACGAGAATCGCACCGTCTCGAACAGTTCGGTAAAGTGCACGANCGA--ACGAGGTTT 113 * * * * * * * * * consensus_5390#0 TGCTGTCGGATCGGATCATGCCGATGCCGT-CGAACGAGCTGCGAAAGCTGCCGGAAGTG 171 consensus_5390#2 TGCTGTCGAATCGGATCATGCCGATGCCGT-CGAACGAGCTGCGAAAGCTGCCGGAAGTG 164 consensus_5390#3 CATGTGTAAAATGAACGAGAATCGCACCGTTCGAACAGTTCGGTAAAGTGCACGAACGAA 145 consensus_5390#1 CTCTAACAAANAGAACGACCAGGACTTTCTTGGAAGAAACTGACTACACCGAACGCGTTC 173 * * * * * *** * * consensus_5390#0 TGACTGCGTACG-----TGTGTGGAAGATGTGTGAAT-ATTCGAATACG-CGCAACAAGA 224 consensus_5390#2 TGACTGCGTACG-----TGTGTGGAAGATGTGTGAAT-ATTCGAATACG-CGCAACAAGA 217 consensus_5390#3 CGAGGTTCTTAA-----CAAAAAGAACGACCAGGACT-TTTGGAAGAAA-CTGACTACAC 198 consensus_5390#1 GAACTATGTTCGATCTGTGTTCTGTTGGTGTATAAATCGTACCTACACAACTGAATTCAT 233 * * * * * * * * * * consensus_5390#0 TGAGCA-ACCTGGTCGTCGTCCTCGTCCTGCTGACGATGTACATTGTGCTTTCGGCCCCA 283 consensus_5390#2 TGAGCA-ACCTGGTCGTCGTCCTCGTCCTGCTGACGATGTACATTGTGCTTTCGGCCCCA 276 consensus_5390#3 CGAACGCGTTCGAACGTTCCGTTCAGTGTTC-GACGGCACACATAAAT------GTGCCA 251 consensus_5390#1 CGAACGCGTTCAAACGGATTAGTCACTTGTTCGCGAATGAACTGAACTGAATTGATTGCG 293 ** * ** ** * ** * consensus_5390#0 TTCGAAATACCGGACCG-GTACAAA---AAGCCGGCTAAAATGTTGCACGAAATTTGCAT 339 consensus_5390#2 TTCGAAATACCGGACCG-GTACAAA---AAGCCGGCTAAAATGTTGCACGAAATTTGTAT 332 consensus_5390#3 TTCGAAATACCGGACCG-GTACAAA---AAGCCGGCTAAAATGTTGCACGAAATTTGTAT 307 consensus_5390#1 CTCATCATGTNGATCCATATTTAAACTAATTNCTGTNTNACCAATCCTTGGAGTGTGTAT 353 ** ** * ** * *** * * * * * * * * * ** ** consensus_5390#0 CGCCGAGTCGGGCGC----CTCGGAGGAGCAGCTGCGCACCTGCCTCGATGGAACCGTAC 395 consensus_5390#2 CGCCGAGTCGGGCGC----CTCGGAGGAGCAGCTGCGCACCTGTCTCGATGGAACCGTAC 388 consensus_5390#3 CGCCGAGTCGGGCGC----CTCGGAGGAGCAGCTGCGCACCTGTCTCGATGGAACCGTAC 363 consensus_5390#1 AAGGGCATGGGGTACAATATACGCAGGAGACATTTTCTGCTCGTATTAGTANCNACATGC 413 * * *** * ** ***** * * * * * * * * consensus_5390#0 CGACAGCTCCGGCCGCCAAGTGCTACATCCACTGCCTGTTCGACAAGATCGACGTGGTGG 455 consensus_5390#2 CGACAGCTCCGGCCGCCAAGTGCTACATCCACTGCCTGTTCGACAAGATCGACGTGGTGG 448 consensus_5390#3 CGACAGCTCCGGCCGCCAAGTGCTACATCCACTGCCTGTTCGACAAG------------- 410 consensus_5390#1 TAGT--TTTCGGTCGGCTTGCGATGGATTG------TGTT-GACCAGACAGCCG-AGTGT 463 * *** ** * * * * ** **** *** ** consensus_5390#0 ACGAGGCGACTGGGCGCATCCTGCTCGACCGACTGCTTTACATCATCCCGGACGACGTGA 515 consensus_5390#2 ACGAGGCGACTGGGCGCATCCTGCTCGACCGACTGCTTTACATCATCCCGGACGACGTGA 508 consensus_5390#3 ------------------------------------------------------------ consensus_5390#1 NCAACTGTTCTCANAACTTATTGGTNNAACCGCCGAATTAC-TAGTACTTGGCTACNAGT 522 consensus_5390#0 AGGCAGCGGTGGACCATTTAACGCGCGAATGTAGCCACATCGTAACGCCGGATAAGTGCG 575 consensus_5390#2 AGGCAGC----------------------------------------------------- 515 consensus_5390#3 ------------------------------------------------------------ consensus_5390#1 ATGCGTCTATGGTGGNTAAATGNCACACAGATTNCACGAGCGTT-CTTTTGCTAGACTAA 581 consensus_5390#0 AAACCGCCTACGAGACGGTCAAATGTTATTTCAATGCGCGCGACGAGGTGATCAAATTCT 635 consensus_5390#2 ------------------------------------------------------------ consensus_5390#3 ------------------------------------------------------------ consensus_5390#1 ATAACGTCTCGATGTAANACAGACG--AAACGAANGAATCNGTCGCTTTCGCCGTACCGG 639 consensus_5390#0 GCCACCTACTAGTGCTGGAGTGAATCGGCAGCACGTGACCAACGTTGCCAATGTGTTTGT 695 consensus_5390#2 ------------------------------------------------------------ consensus_5390#3 ------------------------------------------------------------ consensus_5390#1 GTCCCTTCNTGGGTGAGCGGACACCTTAANTTCGATGAGGTCCGGTGCACAACGGAATNC 699 consensus_5390#0 TTTACCTTTCTATCTCACTTAATGTACAGTTTCAGCATTAGCGATACGTTTGCAGCTCCA 755 consensus_5390#2 ------------------------------------------------------------ consensus_5390#3 ------------------------------------------------------------ consensus_5390#1 GGNTCTGGCCCATGCC--TAATTTGAAACATCCAGATGCGGCGCTGTGNAGCTTGTTCCG 757 consensus_5390#0 TGCTAGCGAAGGCAATATTGCTTTAGGTTTAACAGTAAAGGACAACCAACGGTACAGGAC 815 consensus_5390#2 ------------------------------------------------------------ consensus_5390#3 ------------------------------------------------------------ consensus_5390#1 TGGGANTGTCTCAAGTACAGGGGNAGGTAGNCAGGAATC--------------------- 796 consensus_5390#0 CCATGTGATTTGTGTTATAAGACTATACATTAATCAGCTATTAATCATTTCAGAAAAAAA 875 consensus_5390#2 ------------------------------------------------------------ consensus_5390#3 ------------------------------------------------------------ consensus_5390#1 ------------------------------------------------------------ consensus_5390#0 AAAAAAAAAAAAA 888 consensus_5390#2 ------------- consensus_5390#3 ------------- consensus_5390#1 ------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||