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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5394#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 740 fasta sequence
[GCAAGAATCGGCACGATNNGTTAAAAACATATGAGTAAGAAACCAAAGCTGAACGTAAAAAAAAACATTAACTATGAAAACGCTCCCCCGAATATATCATTCCTCTTCTCCCTTCCACCCCCTTACTTCATCGAAACGCGCGTTTGCAAATGCAAGTTAATAATCTTCCGTACAGCGTCGGCGCAGATGAATCCGTGTCGTTTACCCCGATTGTCCCCATAGTATGGCNCTTTCGGGTTGATTNNTCGNGAGTAATTATGGGNTGAATCGACGCGCACACACACACAGCATACTCGCATTTAGGTTCTTGATTTGATCGGTAGTGTGAATAACGTTTAATGAAGGCAGACCAGGCGAAGCTACAAAAAAGGGCGNAAGCGCGCGTAAACGCGTTCGTTTTACATAAAACATTGCCCACAGCACACACANCACTTACAATCACAGATTCGCCGCTAGAAACACGTNACACGAGTCATTAAGGGAAAACGCTTTGGCGCAGNNGACNAACGTTNGGGGTTCGGGAGGGGAACNTNAACTTTTCAGCAAAACAAGAAGCAGCANCGGGGAAACACGAAACAGACGGANAAAAAGCGANCGGGGANAAAAGGAAATGACCAGGGGANGGGTANAGGGAACAGACGAAAANGAGTTGGGCCGAAAAGGCNTTGGAAACCCGGGGCCCNAAGAAAGNACAGCCCCGTCGTCNAGNTTTGNACCAAAACCAGGGTNGGGGCCCCGCA]
[+] EMBL BX468109 [GCAAGAATCGGCACGATNNGTTAAAAACATATGAGTAAGAAACCAAAGCTGAACGTAAAAAAAAACATTAACTATGAAAACGCTCCCCCGAATATATCATTCCTCTTCTCCCTTCCACCCCCTTACTTCATCGAAACGCGCGTTTGCAAATGCAAGTTAATAATCTTCCGTACAGCGTCGGCGCAGATGAATCCGTGTCGTTTACCCCGATTGTCCCCATAGTATGGCNCTTTCGGGTTGATTNNTCGNGAGTAATTATGGGNTGAATCGACGCGCACACACACACAGCATACTCGCATTTAGGTTCTTGATTTGATCGGTAGTGTGAATAACGTTTAATGAAGGCAGACCAGGCGAAGCTACAAAAAAGGGCGNAAGCGCGCGTAAACGCGTTCGTTTTACATAAAACATTGCCCACAGCACACACANCACTTACAATCACAGATTCGCCGCTAGAAACACGTNACACGAGTCATTAAGGGAAAACGCTTTGGCGCAGNNGACNAACGTTNGGGGTTCGGGAGGGGAACNTNAACTTTTCAGCAAAACAAGAAGCAGCANCGGGGAAACACGAAACAGACGGANAAAAAGCGANCGGGGANAAAAGGAAATGACCAGGGGANGGGTANAGGGAACAGACGAAAANGAGTTGGGCCGAAAAGGCNTTGGAAACCCGGGGCCCNAAGAAAGNACAGCCCCGTCGTCNAGNTTTGNACCAAAACCAGGGTNGGGGCCCCGCA]
consensusID : consensus_5394#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 667 fasta sequence
[TCGCCCCGAGGTNAGTGCAAGGTAGAAAAGTAAACAAACAACAAAAAAAGAACAAGCAAACAAACATACACAAACGAAATCAAATGCCGCATGTTCTGGCCTCTGATTAGCGCGTGGCCACATTAAAAAAAAAGACGGGAAATGACGGTAATGTAGAGAAATTGGCGAATTTGTGTGTATGTACTATGCGCAACGATACATTCCCCAAATGGTAGTGCAATGGTGGTGGTGGAGGTGAAAATCTACAAGGCGTATAGACGAGCGTAATTATAGCATAAAGCGCCAGTAGTAATATTCAATGGGTTAAGGACAAGACGTAAAACGGAAGGGTGAGAGATAGCGATAAAAAAACACAAGGCGAAGCAAAGAGTTAGAGAGATATGCAACATTCTGAGGTTATCCGTCCGCGAATATTTACATTAGCCATTACATACAAACGATTAAAAAACATATGAGTAAAGAAACCAAAGCTGAACGTAAAAAAAAACATTAACTATGAAAACGCTCCCCCGAATATATCATCCTCTTCTCCCTTCCACCCCCTTACTTCATCGAAACGCGCGTTTGCAAATGCAATTAATAATCTTCCGTACAGCTCGGCGCAGATGAATCCGTTCGTTTANCCCATTGTCCCCATAGTATGGCTTTCGGGTGATGGATTNATCGG]
[+] EMBL AL932726 [TCGCCCCGAGGTNAGTGCAAGGTAGAAAAGTAAACAAACAACAAAAAAAGAACAAGCAAACAAACATACACAAACGAAATCAAATGCCGCATGTTCTGGCCTCTGATTAGCGCGTGGCCACATTAAAAAAAAAGACGGGAAATGACGGTAATGTAGAGAAATTGGCGAATTTGTGTGTATGTACTATGCGCAACGATACATTCCCCAAATGGTAGTGCAATGGTGGTGGTGGAGGTGAAAATCTACAAGGCGTATAGACGAGCGTAATTATAGCATAAAGCGCCAGTAGTAATATTCAATGGGTTAAGGACAAGACGTAAAACGGAAGGGTGAGAGATAGCGATAAAAAAACACAAGGCGAAGCAAAGAGTTAGAGAGATATGCAACATTCTGAGGTTATCCGTCCGCGAATATTTACATTAGCCATTACATACAAACGATTAAAAAACATATGAGTAAAGAAACCAAAGCTGAACGTAAAAAAAAACATTAACTATGAAAACGCTCCCCCGAATATATCATCCTCTTCTCCCTTCCACCCCCTTACTTCATCGAAACGCGCGTTTGCAAATGCAATTAATAATCTTCCGTACAGCTCGGCGCAGATGAATCCGTTCGTTTANCCCATTGTCCCCATAGTATGGCTTTCGGGTGATGGATTNATCGG]
consensusID : consensus_5394#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 579 fasta sequence
[CCGAGCAAATGAAACGCAATAACTTAGTTGTAAACAATATCGATAAACTACCTAGACTACCGTAAAGCAACAAAACACATACACACAAAACCAACACATGCTGACACACATACAGAACACCGATTTACATTAACGCAAGTTCATTAGTACATGAATGCCAAATTGTAAAGATTTTAATAACAGCCTTTTAAAGAAATCGATTATAAAGCAAAACAAAAACAAAAAAGTATATATATTATACATATATTGAGCTAACAGCAAGTTGCTGCAATATAGGGGGGGGTGGATGTTATTGGATGGGGGGGGGGGGAAGGAGACGGTTACTGTGGAACTAAACAGAGGAGAAGTAACACACTGCATTTACATTATACGGGCGTAAGAGTGAGAGAAGTGCAAAGGTAGAAAAGTAAAACAAACAAACAAAAAAAGAACAAGCAAACAAACATACACAAACGAAATCAAATGCCGCATGTTCTGGCCTCTGATTAGCGCGTGGCCACATTAAAAAAAAAAGACGGGAAATGACGGTAATGTAGAGAAATTGGCGAATTTGTGTGTATGTACTATGCGCAAGATACA]
[+] EMBL BM649590 [CCGAGCAAATGAAACGCAATAACTTAGTTGTAAACAATATCGATAAACTACCTAGACTACCGTAAAGCAACAAAACACATACACACAAAACCAACACATGCTGACACACATACAGAACACCGATTTACATTAACGCAAGTTCATTAGTACATGAATGCCAAATTGTAAAGATTTTAATAACAGCCTTTTAAAGAAATCGATTATAAAGCAAAACAAAAACAAAAAAGTATATATATTATACATATATTGAGCTAACAGCAAGTTGCTGCAATATAGGGGGGGGTGGATGTTATTGGATGGGGGGGGGGGGAAGGAGACGGTTACTGTGGAACTAAACAGAGGAGAAGTAACACACTGCATTTACATTATACGGGCGTAAGAGTGAGAGAAGTGCAAAGGTAGAAAAGTAAAACAAACAAACAAAAAAAGAACAAGCAAACAAACATACACAAACGAAATCAAATGCCGCATGTTCTGGCCTCTGATTAGCGCGTGGCCACATTAAAAAAAAAAGACGGGAAATGACGGTAATGTAGAGAAATTGGCGAATTTGTGTGTATGTACTATGCGCAAGATACA]
consensusID : consensus_5394#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 275 fasta sequence
[CGACCCACGCGTCCGCAAGACGTAAAACGGAAGGGTGAGAGATAGCGATAAAAAACACAAGGCGAAGCAGAGTTAGAGAGATATGCAACATTCTGAGGTTATCCGTCCGCGAATATTTACATTAGCCATTACATACAAACGATTAAAAAACATATGAGTAAAGAAACCAAAGCTGAACGTAAAAAAAACATTAACTATGAAAACGCTCCCCCGAATATATCATTCCTCTTCTCCCTTCCACCCCCTTACTTCATCGAAACGCGCGTTTGCAAATG]
[+] EMBL BM599017 [CGACCCACGCGTCCGCAAGACGTAAAACGGAAGGGTGAGAGATAGCGATAAAAAACACAAGGCGAAGCAGAGTTAGAGAGATATGCAACATTCTGAGGTTATCCGTCCGCGAATATTTACATTAGCCATTACATACAAACGATTAAAAAACATATGAGTAAAGAAACCAAAGCTGAACGTAAAAAAAACATTAACTATGAAAACGCTCCCCCGAATATATCATTCCTCTTCTCCCTTCCACCCCCTTACTTCATCGAAACGCGCGTTTGCAAATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5394#1 -------TCGCCCCGAGGTNAGTGCAAGGTA-GAAAAGTAAACAAACAACAAAAAAAGAA 52
consensus_5394#3 ------------------------------------------------------------
consensus_5394#0 GCAAGAATCGGCACGATNNGTTAAAAACATATGAGTAAGAAACCAAAGCTGAACGTAAAA 60
consensus_5394#2 ------------------------------------------------CCGAGCAAATGA 12
consensus_5394#1 CAAGCAAACAAACATACACAAACGAAATCAAATGCCGCATGTTCTGGCCTCTGATTAGCG 112
consensus_5394#3 ------------------------------------------------------------
consensus_5394#0 AAAAACATTAACTATGAAAACGCTCCCCCGAATATATCATTCCTCTTCTCCCTTCCACCC 120
consensus_5394#2 AACGCAATAACTTAGTTGTAAACAATATCGA---TAAACTACCTAGACTACCGTAAAGCA 69
consensus_5394#1 CGTGGCCACATTAAAAAAAAAGACGGGAAATGACGGT----AATGTAGAGAAATTGGCGA 168
consensus_5394#3 ------------------------------------------------------------
consensus_5394#0 CCTTACTTCATCGAAACGCGCGTTTGCAAATGCAAGTTAATAATCTTCCGTACAGCGTCG 180
consensus_5394#2 ACAAAACACATACACACA-AAACCAACACATGCTGAC------ACACATACAGAACACCG 122
consensus_5394#1 ATTTGTGTGTATGTACTATGCGCAACGATACATTCCCCAAATGGTAGTGCAATGGTGGTG 228
consensus_5394#3 ------------------------------------------------------------
consensus_5394#0 GCGCAGATGAATCCGTGTCGTTTACCCCGATTGTCCCCATAGTATGGCNCTTTCGGGTTG 240
consensus_5394#2 ATTTACATTAACGCAAGTTCATTAGTACATGAATGCCAAATTGTAAAGATTTTAATAACA 182
consensus_5394#1 GTGGAG-GTGAAAATCTACAAGGCGTATAGACGAGCGTAATTATAGCATAAAGCGCCAGT 287
consensus_5394#3 ------------------------------------------------------------
consensus_5394#0 ATTNNTCGNGAGTAATTATGGGNTGAATCGACGCGCACACACACACAGCATACTCGCATT 300
consensus_5394#2 GCCTTTTAAAGAAATCGATTATAAAGCAAAACA-----------AAAACAAAAAAGTATA 231
consensus_5394#1 AGTAAT----ATTCAATGGGTTAAGGACAAGACG-TAAAACGGAAG--GGTGAGAGATAG 340
consensus_5394#3 -----C----GACCCACGCGTCCG---CAAGACG-TAAAACGGAAG--GGTGAGAGATAG 45
consensus_5394#0 TAGGTTCTTGATTTGATCGGTAGTGTGAATAACG-TTTAATGAAGGCAGACCAGGCGAAG 359
consensus_5394#2 TATATTATACATATATTGAGCTAACAGCAAGTTGCTGCAATATAGG--GGGGGGTGGATG 289
* * * * ** * * * * *
consensus_5394#1 CGATAAAAAAA--CACAAG-GCGAAGCAAAGAGTTAGAGAGATATGCAACATT-CTGAGG 396
consensus_5394#3 CGATAAAAAA---CACAAG-GCGAAGCA--GAGTTAGAGAGATATGCAACATT-CTGAGG 98
consensus_5394#0 CTACAAAAAAGGGCGNAAGCGCGCGTAAACGCGTTCGTTTTACATAAAACATTGCCCACA 419
consensus_5394#2 TTATTGGATGG--GGGGGGGGGGAAGGAGACGGTTACTGTGGAACTAAACAGAGGAGAAG 347
* * * * * * *** * **** *
consensus_5394#1 TTATCCGT-CCGCGAATATTTACA--TTAGCCATTACA-TACAAACGATTAAAAAACATA 452
consensus_5394#3 TTATCCGT-CCGCGAATATTTACA--TTAGCCATTACA-TACAAACGATTAAAAAACATA 154
consensus_5394#0 GCACACACANCACTTACAATCACAGATTCGCCGCTAGA-AACACGTNACACGAGTCATTA 478
consensus_5394#2 TAACACACTGCATTTACA-TTATA---CGGGCGTAAGAGTGAGAGAAGTGCAAAGGTAGA 403
* * * * * * * * * * * * * *
consensus_5394#1 TGAGTAAAGAAACCAAAGCTGAACGTAAAAAA-AAACATTAACTATGAAAACGCT--CCC 509
consensus_5394#3 TGAGTAAAGAAACCAAAGCTGAACGTAAAAAA-AA-CATTAACTATGAAAACGCT--CCC 210
consensus_5394#0 AGGGAAAACGCTTTGGCGCAGNNGACNAACGTTNGGGGTTCGGGAGGGGAACNTNAACTT 538
consensus_5394#2 AAAGTAAAACAAACAAACAAAAAAAGAACAAGCAAACAAACA-TACACAAACGAA----A 458
* *** * * ***
consensus_5394#1 CCGAATATATCAT-CCTCTTCTCCCTTCCACCCCCTTACTTCATCGAAACGCGCGTTTGC 568
consensus_5394#3 CCGAATATATCATTCCTCTTCTCCCTTCCACCCCCTTACTTCATCGAAACGCGCGTTTGC 270
consensus_5394#0 TTCAGCAAAACAAGAAGCAGCANCGGGGAAACACGAAACAGACGGANAAAAAGCGANCGG 598
consensus_5394#2 TCAAATGCCGCATGTTCTGGCCTCTGATTAGCGCGTGGCCACATTAAAAAAAAAAGACGG 518
* ** * * * * * * ** *
consensus_5394#1 AAATGCAATTAATAATCTTCCGTACAGCTCGGCG---CAGATGAATCCGTTCGTTTANCC 625
consensus_5394#3 AAATG------------------------------------------------------- 275
consensus_5394#0 GGANAAAAGGAAATGACCAGGGGANGGGTANAGGGAACAGACGAAAANGAGTTGGGCCGA 658
consensus_5394#2 GAAATGACGGTAATGTAGAGAAATTGGCGAATTTGTGTGTATGTACTATGCGCAAGATAC 578
*
consensus_5394#1 CATTGTCCCCATAGTATGGCTTTCGGGTGATGGATTNATCGG------------------ 667
consensus_5394#3 ------------------------------------------------------------
consensus_5394#0 AAAGGCNTTGGAAACCCGGGGCCCNAAGAAAGNACAGCCCCGTCGTCNAGNTTTGNACCA 718
consensus_5394#2 A----------------------------------------------------------- 579
consensus_5394#1 ----------------------
consensus_5394#3 ----------------------
consensus_5394#0 AAACCAGGGTNGGGGCCCCGCA 740
consensus_5394#2 ----------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||