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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5395#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1317 fasta sequence
[CCGGAGAGAAGCAGAGCTACTACGTAACGGACACCCACGATCGATTTATGTTTTCGCTTGTGTTTTCGTTCGCTTGTCCACGATAACCACGATTCAATGTTGACGCATACACTTGGAGAGATAGTGACCGTGCAATAGTAGTAACGCCGCGCGCAGTAATGAGGTTTTGCGAGCGATCGTGCGATTTGGAATGAAGATCGCTGAACCATCTCCCGAAGAAGAAGCACGCAAGCGAGCGAGCGTTAGCAGAAAGAGCAAGAGATTGATGAAATTATGTTTTTATTGTTGCAAATATACATATAATGCACTAACTAAGCAAGTTGTACATTGTAGAAAGTTGTATTTAAACGAAAAAAAAAAAACAATGCGAAACAAACCTAAGGCGCGCAGGCAGAGATACAATTTTGGGGGAGACACTTATCGATCGATCTAAAACATTATAGTAGGAAGACAAAATGGAACCATAAAACAAACTTCATTCTCATTCGATGCTTCGATGCAGTTTCATGCACTTCTTACAACATAGAAAACAGCAAAAAAACAATTTTGATTCATCACACAAAACACGCAAAGTGTAGTATGAGATGACCTGCGCACGCCAAACTTCATTCATAACTTTTTTCTTTTCCCCCCTCCTTCATAGTAGAGTGAAGATCGCTAGTCTACGAACAAGATATAATATATATTTAGCTTAATATGTAATAGCAGGCATATATACATACATATACTGGCTGGGAGGACATTCCAAACAAATTGAGAGCGTAAACAAGAAAAAAAAGGAACAAGGTACGCGCGTTACTCGGTGAATAAAGAGAAAATACACATTAAAATAATAAAAAAACCCATAAGCAATCGACCATTAGGCGCAACACAAACATCGCCGGCATAGCGTACAGGAAAAAATCTGTGAGGAGCTTACTATGAATTACTCGAAAGGAATAATGGAATGGGGGGAAAGGCGACCCAAATCTCCCGCAATTGTTATTTGATTGTGAAGAGCCCTCGGTAAGTGGAGAAGGGAGGATCAAACGCTGCTCCCTCTCGTATACCTCCATTGATGGTGTGTTCCGCGGCCCCGGGGCAAGACAGCCTGCGGAACATGCAAAGAAAGGACCACTCAAGACCACCACATATACCAGGGGGAAGCGTATTCGGCTTGTATTCGAGGAAGCTTAAAGTGTAGAGAACCACACAGCTGCATAATAAGCTCTGCACCCCTTTAGGCATTAACGAGTTATAGAGAGAGAAAGATACGGTATAATATAATCTAAAAAACACACAAATATTAAACCAGATATTCCCCCCGCCCCAACCCAA]
[+] EMBL BM590546 [CCGGAGAGAAGCAGAGCTACTACGTAACGGACACCCACGATCGATTTATGTTTTCGCTTGTGTTTTCGTTCGCTTGTCCACGATAACCACGATTCAATGTTGACGCATACACTTGGAGAGATAGTGACCGTGCAATAGTAGTAACGCCGCGCGCAGTAATGAGGTTTTGCGAGCGATCGTGCGATTTGGAATGAAGATCGCTGAACCATCTCCCGAAGAAGAAGCACGCAAGCGAGCGAGCGTTAGCAGAAAGAGCAAGAGATTGATGAAATTATGTTTTTATTGTTGCAAATATACATATAATGCACTAACTAAGCAAGTTGTACATTGTAGAAAGTTGTATTTAAACGAAAAAAAAAAAACAATGCGAAACAAACCTAAGGCGCGCAGGCAGAGATACAATTTTGGGGGAGACACTTATCGATCGATCTAAAACATTATAGTAGGAAGACAAAATGGAACCATAAAACAAACTTCATTCTCATTCGATGCTTCGATGCAGTTTCATGCACTTCTTACAACATAGAAAACAGCAAAAAAACAATTTTGATTCATCACACAAAACACGCAAAGTGTAGTATGAGATGACCTGCGCACGCCAAACTTCATTCATAACTTTTTTCTTTTCCCCCCTCCTTCATAGTAGAGTGAAGATCGCTAGTCTACGAACAAGATATAATATATATTT ]
[+] EMBL BX616629 [ GAGATGACCTGCGCACGCCAAACTTCATTCATAACTTTTTTCTTTTCCCCCCTCCTTCATAGTAGAGTGAAGATCGCTAGTCTACGAACAAGATATAATATATATTTAGCTTAATATGTAATAGCAGGCATATATACATACATATACTGGCTGGGAGGACATTCCAAACAAATTGAGAGCGTAAACAAGAAAAAAAAGGAACAAGGTACGCGCGTTACTCGGTGAATAAAGAGAAAATACACATTAAAATAATAAAAAAACCCATAAGCAATCGACCATTAGGCGCAACACAAACATCGCCGGCATAGCGTACAGGAAAAAATCTGTGAGGAGCTTACTATGAATTACTCGAAAGGAATAATGGAATGGGGGGAAAGGCGACCCAAATCTCCCGCAATTGTTATTTGATT ]
[+] EMBL BX616491 [ AATCGACCATTAGGCGCAACACAAACATCGCCGGCATAGCGTACAGGAAAAAATCTGTGAGGAGCTTACTATGAATTACTCGAAAGGAATAATGGAATGGGGGGAAAGGCGACCCAAATCTCCCGCAATTGTTATTTGATTGTGAAGAGCCCTCGGTAAGTGGAGAAGGGAGGATCAAACGCTGCTCCCTCTCGTATACCTCCATTGATGGTGTGTTCCGCGGCCCCGGGGCAAGACAGCCTGCGGAACATGCAAAGAAAGGACCACTCAAGACCACCACATATACCAGGGGGAAGCGTATTCGGCTTGTATTCGAGGAAGCTTAAAGTGTAGAGAACCACACAGCTGCATAATAAGCTCTGCACCCCTTTAGGCATTAACGAGTTATAGAGAGAGAAAGATACGGTATAATATAATCTAAAAAACACACAAATATTAAACCAGATATTCCCCCCGCCCCAACCCAA]
consensusID : consensus_5395#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 498 fasta sequence
[CCCCGAGGTTAAAAGGAACAGTACGCGCGTTACTCGGTGAATAAAGAGAAAATACACATTAAAATAATAAAAAACCCATAAGCAATCGACCATTAGGCGCAACACAAACATTGCCGACAAAGCGTTGAAGAAAAATCTGTGAGGAGCTTACTATGAATTACTCGAAAGGAATAATGGAATGGGGGAAAAGGCGACCCACATCTCCCGCAATTGTTATTTGATTGTGAAGAGCCCTCGGTAAGTGGAGAAGGGAGGATCGCACGCTGCTCCCTCTCGTATACCTCCACTCATGGTGTGTTCCGCGTCCCCGGGAAGGGCAAGACAGCGCGGAACATGCAAAGAAAGGACCACTCAAGACCACCACACATACCAGGGGAGGAGTGTATTCGGCTTGTATTCGAGGAAGCTTAAAGTGTAGAGAACCACACAGCTGCATAATAAGCTCTGCACCCCGTTAGGCATTAACGAGTTATAGAGAGAGAAAGATACGGTATAATA]
[+] EMBL AL932728 [CCCCGAGGTTAAAAGGAACAGTACGCGCGTTACTCGGTGAATAAAGAGAAAATACACATTAAAATAATAAAAAACCCATAAGCAATCGACCATTAGGCGCAACACAAACATTGCCGACAAAGCGTTGAAGAAAAATCTGTGAGGAGCTTACTATGAATTACTCGAAAGGAATAATGGAATGGGGGAAAAGGCGACCCACATCTCCCGCAATTGTTATTTGATTGTGAAGAGCCCTCGGTAAGTGGAGAAGGGAGGATCGCACGCTGCTCCCTCTCGTATACCTCCACTCATGGTGTGTTCCGCGTCCCCGGGAAGGGCAAGACAGCGCGGAACATGCAAAGAAAGGACCACTCAAGACCACCACACATACCAGGGGAGGAGTGTATTCGGCTTGTATTCGAGGAAGCTTAAAGTGTAGAGAACCACACAGCTGCATAATAAGCTCTGCACCCCGTTAGGCATTAACGAGTTATAGAGAGAGAAAGATACGGTATAATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5395#0 CCGGAGAGAAGCAGAGCTACTACGTAACGGACACCCACGATCGATTTATGTTTTCGCTTG 60
consensus_5395#1 ------------------------------------------------------------
consensus_5395#0 TGTTTTCGTTCGCTTGTCCACGATAACCACGATTCAATGTTGACGCATACACTTGGAGAG 120
consensus_5395#1 ------------------------------------------------------------
consensus_5395#0 ATAGTGACCGTGCAATAGTAGTAACGCCGCGCGCAGTAATGAGGTTTTGCGAGCGATCGT 180
consensus_5395#1 ------------------------------------------------------------
consensus_5395#0 GCGATTTGGAATGAAGATCGCTGAACCATCTCCCGAAGAAGAAGCACGCAAGCGAGCGAG 240
consensus_5395#1 ------------------------------------------------------------
consensus_5395#0 CGTTAGCAGAAAGAGCAAGAGATTGATGAAATTATGTTTTTATTGTTGCAAATATACATA 300
consensus_5395#1 ------------------------------------------------------------
consensus_5395#0 TAATGCACTAACTAAGCAAGTTGTACATTGTAGAAAGTTGTATTTAAACGAAAAAAAAAA 360
consensus_5395#1 ------------------------------------------------------------
consensus_5395#0 AACAATGCGAAACAAACCTAAGGCGCGCAGGCAGAGATACAATTTTGGGGGAGACACTTA 420
consensus_5395#1 ------------------------------------------------------------
consensus_5395#0 TCGATCGATCTAAAACATTATAGTAGGAAGACAAAATGGAACCATAAAACAAACTTCATT 480
consensus_5395#1 ------------------------------------------------------------
consensus_5395#0 CTCATTCGATGCTTCGATGCAGTTTCATGCACTTCTTACAACATAGAAAACAGCAAAAAA 540
consensus_5395#1 ------------------------------------------------------------
consensus_5395#0 ACAATTTTGATTCATCACACAAAACACGCAAAGTGTAGTATGAGATGACCTGCGCACGCC 600
consensus_5395#1 ------------------------------------------------------------
consensus_5395#0 AAACTTCATTCATAACTTTTTTCTTTTCCCCCCTCCTTCATAGTAGAGTGAAGATCGCTA 660
consensus_5395#1 ------------------------------------------------------------
consensus_5395#0 GTCTACGAACAAGATATAATATATATTTAGCTTAATATGTAATAGCAGGCATATATACAT 720
consensus_5395#1 ------------------------------------------------------------
consensus_5395#0 ACATATACTGGCTGGGAGGACATTCCAAACAAATTGAGAGCGTAAACAAGAAAAAAAAGG 780
consensus_5395#1 --------------------------------------------CCCCGAGGTTAAAAGG 16
* ******
consensus_5395#0 AACAAGGTACGCGCGTTACTCGGTGAATAAAGAGAAAATACACATTAAAATAATAAAAAA 840
consensus_5395#1 AACA--GTACGCGCGTTACTCGGTGAATAAAGAGAAAATACACATTAAAATAATAAAAAA 74
**** ******************************************************
consensus_5395#0 ACCCATAAGCAATCGACCATTAGGCGCAACACAAACATCGCCGGCATAGCGTACAGGAAA 900
consensus_5395#1 -CCCATAAGCAATCGACCATTAGGCGCAACACAAACATTGCCGACAAAGCGT-TGAAGAA 132
************************************* **** ** ***** **
consensus_5395#0 AAATCTGTGAGGAGCTTACTATGAATTACTCGAAAGGAATAATGGAATGGGGGGAAAGGC 960
consensus_5395#1 AAATCTGTGAGGAGCTTACTATGAATTACTCGAAAGGAATAATGGAATGGGGGAAAAGGC 192
***************************************************** ******
consensus_5395#0 GACCCAAATCTCCCGCAATTGTTATTTGATTGTGAAGAGCCCTCGGTAAGTGGAGAAGGG 1020
consensus_5395#1 GACCCACATCTCCCGCAATTGTTATTTGATTGTGAAGAGCCCTCGGTAAGTGGAGAAGGG 252
****** *****************************************************
consensus_5395#0 AGGATCAAACGCTGCTCCCTCTCGTATACCTCCATTGATGGTGTGTTCCGCGGCCCCGGG 1080
consensus_5395#1 AGGATCGCACGCTGCTCCCTCTCGTATACCTCCACTCATGGTGTGTTCCGCGTCCCCGGG 312
****** ************************** * *************** *******
consensus_5395#0 ----GCAAGACAGCCTGCGGAACATGCAAAGAAAGGACCACTCAAGACCACCACATATAC 1136
consensus_5395#1 AAGGGCAAGACAGC--GCGGAACATGCAAAGAAAGGACCACTCAAGACCACCACACATAC 370
********** *************************************** ****
consensus_5395#0 CAGGGG-GAAGCGTATTCGGCTTGTATTCGAGGAAGCTTAAAGTGTAGAGAACCACACAG 1195
consensus_5395#1 CAGGGGAGGAGTGTATTCGGCTTGTATTCGAGGAAGCTTAAAGTGTAGAGAACCACACAG 430
****** * ** ************************************************
consensus_5395#0 CTGCATAATAAGCTCTGCACCCCTTTAGGCATTAACGAGTTATAGAGAGAGAAAGATACG 1255
consensus_5395#1 CTGCATAATAAGCTCTGCACCCCGTTAGGCATTAACGAGTTATAGAGAGAGAAAGATACG 490
*********************** ************************************
consensus_5395#0 GTATAATATAATCTAAAAAACACACAAATATTAAACCAGATATTCCCCCCGCCCCAACCC 1315
consensus_5395#1 GTATAATA---------------------------------------------------- 498
********
consensus_5395#0 AA 1317
consensus_5395#1 --
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||