These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5401#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 835 fasta sequence [GGCACANGCCACGCNAAGAGGAGACGNGGGNGGATNGNACNAANAGGGGGGNCCACGCGAGANGCATACGCGCAGAGGAGAGAGAGAGAGCCGCACNGCACGGCGTCTCACCGCATGTANNATNCGANGGNAGATNGAGNAAGTCGAACAANCTGATAGATTANGCGCTATACTGCGCCGTGGNCACAACGCGGTTGNCATATGGCAGTATAATAAGAGTTAATAGGTATATAGCGTATACACATAGGAAGAGACTGNTAGCTACGTTATNTGCTNATACCCCAAGGGCCTACTTTAAGACCGAGTCTATGGTGTGACTTTACAGCAGGTCACTGTTAGACACAGAGTATAGAAGCATATCTTAACATACTTTTCACACAGCTGGTANAGAGAACGACGTTCTATACACACTATATCCTACTGCGTACGATCGATNNAGNGACATNNACCAAGTGTAGCGTATNGTTTATACTCGTGCACTGATTTCCTGGTGAGGAACGGTANTTAAATCACAATCAGCTAGAGATCGGGAACGGTCCNCGGGACTTGNTGGGANCTCTAGCGTTGTGTTACGANCTTCGGCGTTAGGGGGCACAGATATTGGTCCGGATTCACACNNTGAGTTAGGCCATGNGCTCTACANCGATTNCACAAATGGCCAAAGAGGCCCTCTCAGGCCTCGGACACNTGGTGTGCCCGTCCTCTNACCAGCCCACTTNATACCCNTATCTAAACGTACCTCCCTCCANGGGTTATTGGCGTAANGTAACCNGAACTGTATCACGATCCAGCGGGCTATATACTGATACGNAGTGGACAGGTAGCAAGTTGGGNA] [+] EMBL AL932866 [GGCACANGCCACGCNAAGAGGAGACGNGGGNGGATNGNACNAANAGGGGGGNCCACGCGAGANGCATACGCGCAGAGGAGAGAGAGAGAGCCGCACNGCACGGCGTCTCACCGCATGTANNATNCGANGGNAGATNGAGNAAGTCGAACAANCTGATAGATTANGCGCTATACTGCGCCGTGGNCACAACGCGGTTGNCATATGGCAGTATAATAAGAGTTAATAGGTATATAGCGTATACACATAGGAAGAGACTGNTAGCTACGTTATNTGCTNATACCCCAAGGGCCTACTTTAAGACCGAGTCTATGGTGTGACTTTACAGCAGGTCACTGTTAGACACAGAGTATAGAAGCATATCTTAACATACTTTTCACACAGCTGGTANAGAGAACGACGTTCTATACACACTATATCCTACTGCGTACGATCGATNNAGNGACATNNACCAAGTGTAGCGTATNGTTTATACTCGTGCACTGATTTCCTGGTGAGGAACGGTANTTAAATCACAATCAGCTAGAGATCGGGAACGGTCCNCGGGACTTGNTGGGANCTCTAGCGTTGTGTTACGANCTTCGGCGTTAGGGGGCACAGATATTGGTCCGGATTCACACNNTGAGTTAGGCCATGNGCTCTACANCGATTNCACAAATGGCCAAAGAGGCCCTCTCAGGCCTCGGACACNTGGTGTGCCCGTCCTCTNACCAGCCCACTTNATACCCNTATCTAAACGTACCTCCCTCCANGGGTTATTGGCGTAANGTAACCNGAACTGTATCACGATCCAGCGGGCTATATACTGATACGNAGTGGACAGGTAGCAAGTTGGGNA] consensusID : consensus_5401#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 707 fasta sequence [CCGCACCATCGGACCCTTTGTGTGTGTGTGTGTGTGAGTGTATGAGGGAAGAACCATTTTTTGTTGGTCGGAAAAGCAGCAATTACAGCAAGTGACAAAAAGCAACGCCTAAAACGGGCAATCGGCAATGCATCGAATAATTAGGCGCAACGTGTGCAGATCAGAGCGCATGGATGTTGGTGGCTTCAATGGATAGTTAGTCGCAAAGCGCGGGCCCATTTTATGCACATTAAGGCGACAATAGAGAGAGAGCCGCAGGAAGGAGTTTACGATTTACATTCGAAGTAGATTTAGCAATCAAAAACTGATAGATTAAGCGCTATCGCCCTGCAACAACGCGTTGCCATATGGAGTTAATAAGAGTTATAGTTATAGCGTATACACATAGGAAGAGACTTTTAGCTACTTTTTGCTATCCCCAAGCCCTACTTTTAGACCGATCTATGTGTGACTTTCACAGTCATGTTAGCAAGAGTATAGAAGCATATCTTAACATACTTTTCACACAGCTGTTAGAGAACGACTTTCTTCACACTATTCCTACTGCTAGATCGATAAGAGACATAACAATGTAGCGTTTTTTTATATCGTGCATGATTTCATGGTGAGGAACGGTATTAAATCACAATCAGCTAGAGATCGGCGAACGTCCACGGGACTTGTTGCGATACTCTAGCGTTGTGTTAGACTCGCTTAGGGCATAGTAA] [+] EMBL BX614869 [CCGCACCATCGGACCCTTTGTGTGTGTGTGTGTGTGAGTGTATGAGGGAAGAACCATTTTTTGTTGGTCGGAAAAGCAGCAATTACAGCAAGTGACAAAAAGCAACGCCTAAAACGGGCAATCGGCAATGCATCGAATAATTAGGCGCAACGTGTGCAGATCAGAGCGCATGGATGTTGGTGGCTTCAATGGATAGTTAGTCGCAAAGCGCGGGCCCATTTTATGCACATTAAGGCGACAATAGAGAGAGAGCCGCAGGAAGGAGTTTACGATTTACATTCGAAGTAGATTTAGCAATCAAAAACTGATAGATTAAGCGCTATCGCCCTGCAACAACGCGTTGCCATATGGAGTTAATAAGAGTTATAGTTATAGCGTATACACATAGGAAGAGACTTTTAGCTACTTTTTGCTATCCCCAAGCCCTACTTTTAGACCGATCTATGTGTGACTTTCACAGTCATGTTAGCAAGAGTATAGAAGCATATCTTAACATACTTTTCACACAGCTGTTAGAGAACGACTTTCTTCACACTATTCCTACTGCTAGATCGATAAGAGACATAACAATGTAGCGTTTTTTTATATCGTGCATGATTTCATGGTGAGGAACGGTATTAAATCACAATCAGCTAGAGATCGGCGAACGTCCACGGGACTTGTTGCGATACTCTAGCGTTGTGTTAGACTCGCTTAGGGCATAGTAA] consensusID : consensus_5401#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 695 fasta sequence [CCGCTCGGAGCTCGAACCAGGAGGGGACAAAAAAACCGCCCGCACCATCGGACCCTTTGTGTGTGTGTGTGTGTGAGTGTATGAGGGAAGAACCATTTTTTGTTGGTCGGAAAAGCAGCAATTACAGCAAGTGACAAAAAGCAACGCCTAAAACGGGCAATCGGCAATGCATCGAATAATTAGGCGCAACGTGTGCAGACCAGAGCGCATGGATGTTGGTGGCTTCAATGGATAGTTAGTCGCAAAGCGCGGGCCCATTTTATGCACATTAAGGCGACAATAGAGCGGAAAAAAGAAGAGAGTGAGGGAGGGAGAGTGAGAAAAATACGATAAGGTTCATAAAAAAATCAAAACGCAACGGATTCTGCTGGTGCTCAGTTACAGTGAAGCCACCAGGGCAAAGGGACGAACCCTCATTCCGTGCCGGACGTTGTGCAACGATAGAATCCGCTTTTTGTGCATCGTCCCATAATAATACTGGTCCAGTGGCAAGTGATTTGAATAGTGAAAAGTGAAAATTTAAAAGTAACCGACACTGTGTGCTCGTTTGAACGATTAGCGTGAGGAGAAGGGGCAGCCCGTGTCGCACCAGTTAGGTGACGAGTTGGGTTAATCAAGCGATCCATCACGATCCACCCGCGCTACTCTATTTCGCAGCGAACAGAGCACAGGTTCCACAGATGGCCGCCAGCCCC] [+] EMBL BM593560 [CCGCTCGGAGCTCGAACCAGGAGGGGACAAAAAAACCGCCCGCACCATCGGACCCTTTGTGTGTGTGTGTGTGTGAGTGTATGAGGGAAGAACCATTTTTTGTTGGTCGGAAAAGCAGCAATTACAGCAAGTGACAAAAAGCAACGCCTAAAACGGGCAATCGGCAATGCATCGAATAATTAGGCGCAACGTGTGCAGACCAGAGCGCATGGATGTTGGTGGCTTCAATGGATAGTTAGTCGCAAAGCGCGGGCCCATTTTATGCACATTAAGGCGACAATAGAGCGGAAAAAAGAAGAGAGTGAGGGAGGGAGAGTGAGAAAAATACGATAAGGTTCATAAAAAAATCAAAACGCAACGGATTCTGCTGGTGCTCAGTTACAGTGAAGCCACCAGGGCAAAGGGACGAACCCTCATTCCGTGCCGGACGTTGTGCAACGATAGAATCCGCTTTTTGTGCATCGTCCCATAATAATACTGGTCCAGTGGCAAGTGATTTGAATAGTGAAAAGTGAAAATTTAAAAGTAACCGACACTGTGTGCTCGTTTGAACGATTAGCGTGAGGAGAAGGGGCAGCCCGTGTCGCACCAGTTAGGTGACGAGTTGGGTTAATCAAGCGATCCATCACGATCCACCCGCGCTACTCTATTTCGCAGCGAACAGAGCACAGGTTCCACAGATGGCCGCCAGCCCC] consensusID : consensus_5401#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 627 fasta sequence [CTCACGATGAGCATCATCTTCATGATCGGTATCTGTTCGGCTGTTTTCCTGCTTGAAATGCGTGCCAGGGAAATGCCAAAATAACGACTTTCGTTTCATCATCATTCGTTCGCACCACCAGAAGATACGAGAGAGAGAGAGAGAGAGCCGCAGGAAGGAGTTTACGATTTACATTCGAAGTAGATTTAGCAATCAAAAACTGATAGATTAAGCGCTATCGCCCTGCAACAACGCGTTGCCATATGGAGTTAATAAGAGTTATAGTTATAGCGTATACACATAGGAAGAGACTTTTAGCTACTTTTTGCTATCCCCAAGCCCTACTTTTAGACCGATCTATGTGTGACTTTCACAGTCATGTTAGCAAGAGTATAGAAGCATATCTTAACATACTTTTCACACAGCTGTTAGAGAACGACTTTCTTCACACTATTCCTACTGCTAGATCGATAAGAGACATAACAATGTAGCGTTTTTTTATATCGTGCATGATTTCATGGTGAGGAACGGTATTAAATCACAATCAGCTAGAGATCGGCGAACGTCCACGGGACTTGTTGCGATACTCTAGCGTTGTGTTAGACTCGCTTAGGGCATAGTAATTGTAACGATAAAAATGAGTTAGCA] [+] EMBL BX621474 [CTCACGATGAGCATCATCTTCATGATCGGTATCTGTTCGGCTGTTTTCCTGCTTGAAATGCGTGCCAGGGAAATGCCAAAATAACGACTTTCGTTTCATCATCATTCGTTCGCACCACCAGAAGATACGAGAGAGAGAGAGAGAGAGCCGCAGGAAGGAGTTTACGATTTACATTCGAAGTAGATTTAGCAATCAAAAACTGATAGATTAAGCGCTATCGCCCTGCAACAACGCGTTGCCATATGGAGTTAATAAGAGTTATAGTTATAGCGTATACACATAGGAAGAGACTTTTAGCTACTTTTTGCTATCCCCAAGCCCTACTTTTAGACCGATCTATGTGTGACTTTCACAGTCATGTTAGCAAGAGTATAGAAGCATATCTTAACATACTTTTCACACAGCTGTTAGAGAACGACTTTCTTCACACTATTCCTACTGCTAGATCGATAAGAGACATAACAATGTAGCGTTTTTTTATATCGTGCATGATTTCATGGTGAGGAACGGTATTAAATCACAATCAGCTAGAGATCGGCGAACGTCCACGGGACTTGTTGCGATACTCTAGCGTTGTGTTAGACTCGCTTAGGGCATAGTAATTGTAACGATAAAAATGAGTTAGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5401#0 ------------------------------------------------------------ consensus_5401#3 ------------------------------------------------------------ consensus_5401#1 CCGCACCATCGGACCCTTTGTGTGTGTGTGTGTGTGAGTGTATGAGGGAAGAACCATTTT 60 consensus_5401#2 ------------------------------------------------------------ consensus_5401#0 ------------------------------------------------------------ consensus_5401#3 ------------------------------------------------CTCACGATGAGC 12 consensus_5401#1 TTGTTGGTCGGAAAAGCAGCAATTACAGCAAGTGACAAAAAGCAACGCCTAAAACGGGCA 120 consensus_5401#2 -------------------------------------------------CCGCTCGGAGC 11 consensus_5401#0 --------------------------------------------GGCACANGCCACGCNA 16 consensus_5401#3 ATCATCTTCATGATCGGTATCTGTTCGGCTGTTTTCCTGCTTGAAATGCGTGCCAGGGAA 72 consensus_5401#1 ATCGGCAATGCATCGAATAATTAGGCGCAACGTGTGCAGATCAGAGCGCATGG-ATGTTG 179 consensus_5401#2 TCGAACCAGGAGGGGACAAAAAAACCGCCCGCACCATCGGACCCTTTGTGTGT-GTGTGT 70 * * consensus_5401#0 AGAGGAGACGNGGGNGGATNGNACNAANAGGGGG-GNCCACGCGAGANGCATACGC-GCA 74 consensus_5401#3 ATGCCAAAATAACGACTTTCGTTTCATCATCATTCGTTCGCACCACCAGAAGATAC-GAG 131 consensus_5401#1 GTGGCTTCAATGGATAGTTAGTCGCAA-AGCGCGGGCCCATTTTATGCACAT-TAA-GGC 236 consensus_5401#2 GTGTGAG-TGTATGAGGGAAGAACCATTTTTTGTTGGTCGGAAAAGCAGCAATTACAGCA 129 * * * * * * * consensus_5401#0 GAGGAGAGAGAGAGAGCCGCACNGCACGGCGTCTC-ACCGCATGTANNATNCGANGGNAG 133 consensus_5401#3 AGAGAGAGAGAGAGAGCCGCAGG--AAGGAGTTT-----ACGATTTACATTCGAAG-TAG 183 consensus_5401#1 GACAATAGAGAGAGAGCCGCAGG--AAGGAGTTT-----ACGATTTACATTCGAAG-TAG 288 consensus_5401#2 AGTGACAAAAAGCAACGCCTAAAACGGGCAATCGGCAATGCATCGAATAATTAGGCGCAA 189 * * * ** * * * * * * * * consensus_5401#0 ATNGAGNAAGTCGAACAANCTGATAGAT-TANGCGCTATACTGCGCCGTGGNCACAACGC 192 consensus_5401#3 ATTTAGCAA-TCAA--AAACTGATAGAT-TAAGCGCTAT----CGCCCTG-CAACAACGC 234 consensus_5401#1 ATTTAGCAA-TCAA--AAACTGATAGAT-TAAGCGCTAT----CGCCCTG-CAACAACGC 339 consensus_5401#2 CGTGTGCAGACCAG---AGCGCATGGATGTTGGTGGCTT----CAATGGA-TAGTTAGTC 241 * * * * * ** *** * * * * * * * consensus_5401#0 GGTTGNCATATGGCAGTATAATAAGAGTTAATAGGTATATAGCGTATACACATAGGAAGA 252 consensus_5401#3 G-TTGCCATATGG-AGT-TAATAAGAGTTA-TAGTTAT--AGCGTATACACATAGGAAGA 288 consensus_5401#1 G-TTGCCATATGG-AGT-TAATAAGAGTTA-TAGTTAT--AGCGTATACACATAGGAAGA 393 consensus_5401#2 GCAAAGCGCGGGCCCATTTTATGCACATTA--AGGCGACAATAGAGCGGAAAAAAGAAGA 299 * * * * * ** *** ** * * * * * ***** consensus_5401#0 GACTGNTAGCTACGTTATNTGCTNATACCCCAAGGGCCTACTTTAAGACCGAG--TCTAT 310 consensus_5401#3 GACTTTTAGCTACTTT-----TTGCTATCCCCAAGCCCTACTTTTAGACCGA---TCTAT 340 consensus_5401#1 GACTTTTAGCTACTTT-----TTGCTATCCCCAAGCCCTACTTTTAGACCGA---TCTAT 445 consensus_5401#2 GAGTGAGGGAGGGAGAGTGAGAAAAATACGATAAGGTTCATAAAAAAATCAAAACGCAAC 359 ** * * * * * * * * * * * * consensus_5401#0 GGTGTGACTTTACAGCAGGTCACTGTTAGA-CAC-AGAGTATAGAAGCATATCTTAACAT 368 consensus_5401#3 G-TGTGACTTT-CAC--AGTCA-TGTTAG--CA--AGAGTATAGAAGCATATCTTAACAT 391 consensus_5401#1 G-TGTGACTTT-CAC--AGTCA-TGTTAG--CA--AGAGTATAGAAGCATATCTTAACAT 496 consensus_5401#2 GGATTCTGCTGGTGCTCAGTTACAGTGAAGCCACCAGGGCAAAGGGACGAACCCTCAT-T 418 * * * ** * ** * ** ** * * ** * * * * * * consensus_5401#0 ACTTTTCACACAGCTGGTANAGAGA-ACGACGTTCTATACACACTATATCCTACTGCGTA 427 consensus_5401#3 ACTTTTCACACAGCTGTTAGAGA---ACGACTTTCTT--CACACTAT-TCCTACTGC-TA 444 consensus_5401#1 ACTTTTCACACAGCTGTTAGAGA---ACGACTTTCTT--CACACTAT-TCCTACTGC-TA 549 consensus_5401#2 CCGTGCCGGACGTTGTGCAACGATAGAATCCGCTTTTTGTGCATCGTCCCATAATAA-TA 477 * * * ** * ** * * * * ** * * ** * ** consensus_5401#0 C--GATCGATNNAGNGACATNNACCAAGTGTAGCGTA-TNGTTTA----TACTCG-TGCA 479 consensus_5401#3 ---GATCGATAA-GAGACATAAC---AATGTAGCGT--TTTTTTA----TA-TCG-TGCA 489 consensus_5401#1 ---GATCGATAA-GAGACATAAC---AATGTAGCGT--TTTTTTA----TA-TCG-TGCA 594 consensus_5401#2 CTGGTCCAGTGGCAAGTGATTTGAATAGTGAAAAGTGAAAATTTAAAAGTAACCGACACT 537 * * * * ** * ** * ** **** ** ** * consensus_5401#0 CTGATTTCCTGGTGAGGAACGGTANTTAAATCACAATCAGCTAGAGATCGGGAACGGTCC 539 consensus_5401#3 -TGATTTCATGGTGAGGAACGGTATT-AAATCACAATCAGCTAGAGATCGGCGAACGTCC 547 consensus_5401#1 -TGATTTCATGGTGAGGAACGGTATT-AAATCACAATCAGCTAGAGATCGGCGAACGTCC 652 consensus_5401#2 GTGTGCTCGTTTGAACGATTAGCGTGAGGAGAAGGGGCAGCCCGTG-TCG--CACCAGTT 594 ** ** * * ** * * * **** * * *** * consensus_5401#0 NCGGGACTTGNTGGGAN-CTCTAGCGTTGTGTTACGANCTTCGGCGTTAGGGGGCACAGA 598 consensus_5401#3 ACGGGACTTGTTGCGATACTCTAGCGTTGTGTTA-GACTCGC----TTAGGG--CATAGT 600 consensus_5401#1 ACGGGACTTGTTGCGATACTCTAGCGTTGTGTTA-GACTCGC----TTAGGG--CATAGT 705 consensus_5401#2 AGGTGACGAGTTGGGTTAATCAAGCGATCCATCACGATCCAC----CCGCGC--TACTCT 648 * *** * ** * ** **** * * * ** * * * consensus_5401#0 TATTGGTCCGGATTCACACNNTGAGTTAGGCCATGNGCTCTACANCGATTNCACAAATGG 658 consensus_5401#3 AATTGTAACGATA----AAAATGAGTTAGCA----------------------------- 627 consensus_5401#1 AA---------------------------------------------------------- 707 consensus_5401#2 ATTTCGCAGCGAACAGAGCACAGGTTCCACAGATGGCCGCCAGCCCC------------- 695 consensus_5401#0 CCAAAGAGGCCCTCTCAGGCCTCGGACACNTGGTGTGCCCGTCCTCTNACCAGCCCACTT 718 consensus_5401#3 ------------------------------------------------------------ consensus_5401#1 ------------------------------------------------------------ consensus_5401#2 ------------------------------------------------------------ consensus_5401#0 NATACCCNTATCTAAACGTACCTCCCTCCANGGGTTATTGGCGTAANGTAACCNGAACTG 778 consensus_5401#3 ------------------------------------------------------------ consensus_5401#1 ------------------------------------------------------------ consensus_5401#2 ------------------------------------------------------------ consensus_5401#0 TATCACGATCCAGCGGGCTATATACTGATACGNAGTGGACAGGTAGCAAGTTGGGNA 835 consensus_5401#3 --------------------------------------------------------- consensus_5401#1 --------------------------------------------------------- consensus_5401#2 --------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||