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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5402#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1351 fasta sequence
[TTAGTTCTCTTCCCATTATGAAT--CCATTCACTGTTAAGCCGTCGCCTCGTCGTTCGTTAGCACATGTGTGATTTTGCAAAACAGAC-AAAAAAAACTCATTGTAATGCGGTAGGCCACGGCACGTCCCGGGCGTGCGCCGCTAGAAGAGATCCATATCATCGCACGTAATATCGAGACAGTCCTCTTGGTAGCTGGCCAAGTTTCGCAACGCTGTCGAACCGTCCGGCAGCATGCGGCACGCGTCCTCTGGAGCGACGTCCGAATCTTTGTCCGTTTCGTGCCCGTGCAGCGCAGCGTTTTTGTCCGGGCTGGTGGTGACGTTTACGTGGATGTTGCGCGCTTCGAAGTCGGAGTTGCCCTCAAAGTTTTCCTCACCCACCGGGGAAGGGGGAGGGTTTGAAAGAGTGCTGTGTGTTTCCGCCTTCAGGTGTGCCATGATCGGCAGGGAGGAAGAAGTTTGCTCAGCATCGTTGGCCGCTTGGCGGTTAAGCGTTTTCTTCAGCTCCTCCACCTTCTTGTCCCGGTTGATGCTTTTCGTTAGCTTCCATTCTTTCTGCTTCGCTTTTTTCTCGCTCTGAAAGATTGTCCTTTTGGCCTCCTCGTCTACCTCTTCGCAATGCTTCAGGAGAAAGAGAAACACACCGCCCGGGGTGCGCCGCCGCCAGCCTTTCATAACGAGCATTCCACCGTCGGCTTCGATTTTCTGTGTCTCTTTGAAGAGTTTCATTGGAATTTCCTGGCCGAGCGTTTCAGCTACTCGCACCATCAGTTCCGTGTGCGTTTCCTCCAGCTTTTCGGCCAGCTCTATGCCAAACTTTTCATTGGTACAGTTTTCCCCCACCTCGAGATCCGGTATGTGCCTGCAATCAAATCTTGGAGCGTTTTGTGCACAATCGTCACTATTGCTATCAGTGCTGTTGTTTCGCTTGCCGATGCGATCCTTAATACTTCCGCGCCGCTCCGTACCGCTCGCTCCGGATACGAGTTGTGACCCGTCCGCATGCGTTTCCCGCCACCCGTGTAACCATCGGAATCGTCCGAATTGGACTGGCGGCGTTTCAAGCGCTCAAACGCATTGCCGCTTTGCAGCCGAAATCTCAGCTTGTAGTCGTACGACTCGACGTCACGGTTTCGCATATCACTCCCGGTCACACCGCAACCGCGCATCGTTTCCATCAGTGTGTCCTCTTGCAAGCTTTCCGTCCATATGTTATACTTCTTTGTTCGGGCGGCGGTACCGTGTGGCATGGGTTTGGGGTTGGCACCACTAGCAGCAGCGGCGGCGGCGGCGGCGGCAGCAGCAGCAGTGGCAGCAGCGACAGCCGGAGGATGCGCATGAAGCGGCCGCTTG]
[+] EMBL CNS09HI1 [TTAGTTCTCTTCCCATTATGAAT CCATTCACTGTTAAGCCGTCGCCTCGTCGTTCGTTAGCACATGTGTGATTTTGCAAAACAGAC AAAAAAAACTCATTGTAATGCGGTAGGCCACGGCACGTCCCGGGCGTGCGCCGCTAGAAGAGATCCATATCATCGCACGTAATATCGAGACAGTCCTCTTGGTAGCTGGCCAAGTTTCGCAACGCTGTCGAACCGTCCGGCAGCATGCGGCACGCGTCCTCTGGAGCGACGTCCGAATCTTTGTCCGTTTCGTGCCCGTGCAGCGCAGCGTTTTTGTCCGGGCTGGTGGTGACGTTTACGTGGATGTTGCGCGCTTCGAAGTCGGAGTTGCCCTCAAAGTTTTCCTCACCCACCGGGGAAGGGGGAGGGTTTGAAAGAGTGCTGTGTGTTTCCGCCTTCAGGTGTGCCATGATCGGCAGGGAGGAAGAAGTTTGCTCAGCATCGTTGGCCGCTTGGCGGTTAAGCGTTTTCTTCAGCTCCTCCACCTTCTTGTCCCGGTTGATGCTTTTCGTTAGCTTCCATTCTTTCTGCTTCGCTTTTTTCTCGCTCTGAAAGATTGTCCTTTTGGCCTCCTCGTCTACCTCTTCGCAATGCTTCAGGAGAAAGAGAAACACACCGCCCGGGGTGCGCCGCCGCCAGCCTTTCATAACGAGCATTCCACCGTCGGCTTCGATTTTCTGTGTCTCTTTGAAGAGTTTCATTGGAATTTCCTGGCCGAGCGTTTCAGCTACTCGCACCATCAGTTCCGTGTGCGTTTCCTCCAGCTTTTCGGCCAGCTCTATGCCAAACTTTTCATTGGTACAGTTTTCCCCCACCTCGAGATCCGGTATGTGCCTGCAATCAAATCTTGGAGCGTTTTGTGCACAATCGTCA ]
[+] EMBL AL932876 [ TGAATTCCCATTCACTGTTAAGCCGTCGCCTCGTCGTTCGTTAGCACATGTGTGATTTTGCAAAACAGACAAAAAAAAACTCATTATAATG ]
[-] EMBL CNS09HI0 [ TTTTGGCCTCCTCGTCTACCTCTTCGCAATGCTTCAGGAGAAAGAGAAACACACCGCCCGGGGTGCGCCGCCGCCAGCCTTTCATAACGAGCATTCCACCGTCGGCTTCGATTTTCTGTGTCTCTTTGAAGAGTTTCATTGGAATTTCCTGGCCGAGCGTTTCAGCTACTCGCACCATCAGTTCCGTGTGCGTTTCCTCCAGCTTTTCGGCCAGCTCTATGCCAAACTTTTCATTGGTACAGTTTTCCCCCACCTCGAGATCCGGTATGTGCCTGCAATCAAATCTTGGAGCGTTTTGTGCACAATCGTCACTATTGCTATCAGTGCTGTTGTTTCGCTTGCCGATGCGATCCTTAATACTTCCGCGCCGCTCCGTACCGCTCGCTCCGGATACGAGTTGTGACCCGTCCGCATGCGTTTCCCGCCACCCGTGTAACCATCGGAATCGTCCGAATTGGACTGGCGGCGTTTCAAGCGCTCAAACGCATTGCCGCTTTGCAGCCGAAATCTCAGCTTGTAGTCGTACGACTCGACGTCACGGTTTCGCATATCACTCCCGGTCACACCGCAACCGCGCATCGTTTCCATCAGTGTGTCCTCTTGCAAGCTTTCCGTCCATATGTTATACTTCTTTGTTCGGGCGGCGGTACCGTGTGGCATGGGTTTGGGGTTGGCACCACTAGCAGCAGCGGCGGCGGCGGCGGCGGCAGCAGCAGCAGTGGCAGCAGCGACAGCCGGAGGATGCGCATGAAGCGGCCGCTTG]
consensusID : consensus_5402#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 695 fasta sequence
[GGGGAGGGTTTGAAAGAGTGCTGTGTGTTTCCGCCTTCAGGTGTGCCATGATCGGCAGGGAGGAAGAAGTTTGCTCAGCATCGTTGGCCGCTTGGCGGTTAAGCGTTTTCTTCAGCTCCTCCACCTTCTTGTCCCGGTTGATGCTTTTCGTTAGCTTCCATTCCTTCTGCTTCGCTTTTTTCTCGCTCTGAAAGATTGTCCTTTTGGCCTCCTCGTCTACCTCTTCGCAATGCTTCAGGAGAAAGAGAAACACACCGCCCGGGGTGCGCCGCCGCCAGCCTTTCATAACGAGCATTCCACCGTCGGCTTCGATTTTCTGTGTCTCTTTGAAGAGTTTCATTGGAATTTCCTGGCCGAGCGTTTCAGCTACTCGCACCATCAGTTCCGTGTGCGTTTCCTCCAGCTTTTCGGCCAGCTCTATGCCAAACTTTTCATTGGTACAGTTTTCCCCCACCTCGAGATCCGGTATGTGCCTTGGAGCGTTTTGTGCACAATCGTCACTATTGCTATCAGTGCTGTTGTTTCGCTTGCCGATGCGATCCTTAATACTTCCCCGCCGCTCCGTACCGCTCGCCTCCGGATACGAGTTGTGACCCGTCCGCATGCGTTTCCCGCCACCGGTGTAACCATCGGAATCGTCCGAATTGGACTGGCGGCGCTTCAAGCGCCGGACGCGTGGGCGGACGCGTGGGCGG]
[-] EMBL BM575832 [GGGGAGGGTTTGAAAGAGTGCTGTGTGTTTCCGCCTTCAGGTGTGCCATGATCGGCAGGGAGGAAGAAGTTTGCTCAGCATCGTTGGCCGCTTGGCGGTTAAGCGTTTTCTTCAGCTCCTCCACCTTCTTGTCCCGGTTGATGCTTTTCGTTAGCTTCCATTCCTTCTGCTTCGCTTTTTTCTCGCTCTGAAAGATTGTCCTTTTGGCCTCCTCGTCTACCTCTTCGCAATGCTTCAGGAGAAAGAGAAACACACCGCCCGGGGTGCGCCGCCGCCAGCCTTTCATAACGAGCATTCCACCGTCGGCTTCGATTTTCTGTGTCTCTTTGAAGAGTTTCATTGGAATTTCCTGGCCGAGCGTTTCAGCTACTCGCACCATCAGTTCCGTGTGCGTTTCCTCCAGCTTTTCGGCCAGCTCTATGCCAAACTTTTCATTGGTACAGTTTTCCCCCACCTCGAGATCCGGTATGTGCCTTGGAGCGTTTTGTGCACAATCGTCACTATTGCTATCAGTGCTGTTGTTTCGCTTGCCGATGCGATCCTTAATACTTCCCCGCCGCTCCGTACCGCTCGCCTCCGGATACGAGTTGTGACCCGTCCGCATGCGTTTCCCGCCACCGGTGTAACCATCGGAATCGTCCGAATTGGACTGGCGGCGCTTCAAGCGCCGGACGCGTGGGCGGACGCGTGGGCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5402#0 TTAGTTCTCTTCCCATTATGAATCCATTCACTGTTAAGCCGTCGCCTCGTCGTTCGTTAG 60
consensus_5402#1 ------------------------------------------------------------
consensus_5402#0 CACATGTGTGATTTTGCAAAACAGACAAAAAAAACTCATTGTAATGCGGTAGGCCACGGC 120
consensus_5402#1 ------------------------------------------------------------
consensus_5402#0 ACGTCCCGGGCGTGCGCCGCTAGAAGAGATCCATATCATCGCACGTAATATCGAGACAGT 180
consensus_5402#1 ------------------------------------------------------------
consensus_5402#0 CCTCTTGGTAGCTGGCCAAGTTTCGCAACGCTGTCGAACCGTCCGGCAGCATGCGGCACG 240
consensus_5402#1 ------------------------------------------------------------
consensus_5402#0 CGTCCTCTGGAGCGACGTCCGAATCTTTGTCCGTTTCGTGCCCGTGCAGCGCAGCGTTTT 300
consensus_5402#1 ------------------------------------------------------------
consensus_5402#0 TGTCCGGGCTGGTGGTGACGTTTACGTGGATGTTGCGCGCTTCGAAGTCGGAGTTGCCCT 360
consensus_5402#1 ------------------------------------------------------------
consensus_5402#0 CAAAGTTTTCCTCACCCACCGGGGAAGGGGGAGGGTTTGAAAGAGTGCTGTGTGTTTCCG 420
consensus_5402#1 ---------------------------GGGGAGGGTTTGAAAGAGTGCTGTGTGTTTCCG 33
*********************************
consensus_5402#0 CCTTCAGGTGTGCCATGATCGGCAGGGAGGAAGAAGTTTGCTCAGCATCGTTGGCCGCTT 480
consensus_5402#1 CCTTCAGGTGTGCCATGATCGGCAGGGAGGAAGAAGTTTGCTCAGCATCGTTGGCCGCTT 93
************************************************************
consensus_5402#0 GGCGGTTAAGCGTTTTCTTCAGCTCCTCCACCTTCTTGTCCCGGTTGATGCTTTTCGTTA 540
consensus_5402#1 GGCGGTTAAGCGTTTTCTTCAGCTCCTCCACCTTCTTGTCCCGGTTGATGCTTTTCGTTA 153
************************************************************
consensus_5402#0 GCTTCCATTCTTTCTGCTTCGCTTTTTTCTCGCTCTGAAAGATTGTCCTTTTGGCCTCCT 600
consensus_5402#1 GCTTCCATTCCTTCTGCTTCGCTTTTTTCTCGCTCTGAAAGATTGTCCTTTTGGCCTCCT 213
********** *************************************************
consensus_5402#0 CGTCTACCTCTTCGCAATGCTTCAGGAGAAAGAGAAACACACCGCCCGGGGTGCGCCGCC 660
consensus_5402#1 CGTCTACCTCTTCGCAATGCTTCAGGAGAAAGAGAAACACACCGCCCGGGGTGCGCCGCC 273
************************************************************
consensus_5402#0 GCCAGCCTTTCATAACGAGCATTCCACCGTCGGCTTCGATTTTCTGTGTCTCTTTGAAGA 720
consensus_5402#1 GCCAGCCTTTCATAACGAGCATTCCACCGTCGGCTTCGATTTTCTGTGTCTCTTTGAAGA 333
************************************************************
consensus_5402#0 GTTTCATTGGAATTTCCTGGCCGAGCGTTTCAGCTACTCGCACCATCAGTTCCGTGTGCG 780
consensus_5402#1 GTTTCATTGGAATTTCCTGGCCGAGCGTTTCAGCTACTCGCACCATCAGTTCCGTGTGCG 393
************************************************************
consensus_5402#0 TTTCCTCCAGCTTTTCGGCCAGCTCTATGCCAAACTTTTCATTGGTACAGTTTTCCCCCA 840
consensus_5402#1 TTTCCTCCAGCTTTTCGGCCAGCTCTATGCCAAACTTTTCATTGGTACAGTTTTCCCCCA 453
************************************************************
consensus_5402#0 CCTCGAGATCCGGTATGTGCCTGCAATCAAATCTTGGAGCGTTTTGTGCACAATCGTCAC 900
consensus_5402#1 CCTCGAGATCCGGTATGTGCCT------------TGGAGCGTTTTGTGCACAATCGTCAC 501
********************** **************************
consensus_5402#0 TATTGCTATCAGTGCTGTTGTTTCGCTTGCCGATGCGATCCTTAATACTTCCGCGCCGCT 960
consensus_5402#1 TATTGCTATCAGTGCTGTTGTTTCGCTTGCCGATGCGATCCTTAATACTTCCCCGCCGCT 561
**************************************************** *******
consensus_5402#0 CCGTACCGCTCGC-TCCGGATACGAGTTGTGACCCGTCCGCATGCGTTTCCCGCCACCCG 1019
consensus_5402#1 CCGTACCGCTCGCCTCCGGATACGAGTTGTGACCCGTCCGCATGCGTTTCCCGCCACCGG 621
************* ******************************************** *
consensus_5402#0 TGTAACCATCGGAATCGTCCGAATTGGACTGGCGGCGTTTCAAGCGCTCAAACGCATTGC 1079
consensus_5402#1 TGTAACCATCGGAATCGTCCGAATTGGACTGGCGGCGCTTCAAGCGC-CGGACGCGTGGG 680
************************************* ********* * **** * *
consensus_5402#0 CGCTT-TGCAGCCGAAATCTCAGCTTGTAGTCGTACGACTCGACGTCACGGTTTCGCATA 1138
consensus_5402#1 CGGACGCGTGGGCGG--------------------------------------------- 695
** * * **
consensus_5402#0 TCACTCCCGGTCACACCGCAACCGCGCATCGTTTCCATCAGTGTGTCCTCTTGCAAGCTT 1198
consensus_5402#1 ------------------------------------------------------------
consensus_5402#0 TCCGTCCATATGTTATACTTCTTTGTTCGGGCGGCGGTACCGTGTGGCATGGGTTTGGGG 1258
consensus_5402#1 ------------------------------------------------------------
consensus_5402#0 TTGGCACCACTAGCAGCAGCGGCGGCGGCGGCGGCGGCAGCAGCAGCAGTGGCAGCAGCG 1318
consensus_5402#1 ------------------------------------------------------------
consensus_5402#0 ACAGCCGGAGGATGCGCATGAAGCGGCCGCTTG 1351
consensus_5402#1 ---------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||