cluster # 5411

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Anopheles gambiae
cluster # 5411 cluster # 5411 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5411#0 length = 828 sequences # 3

consensus_5411#1 length = 240 sequences # 1

consensusID : consensus_5411#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 828
fasta sequence

                              [CGCTCTCGATCGGGCTGGTACAGCGTGACCAGGAGCAGCTGCTGAAGCGCACCGAGTCAACCGAGCGGCAGCAGGAGAGTGGCGAGGAAGCGGACGATAGCTGGCATCTGCTGGAGCGTTTCCGACTACCGCTGGACGAGTACCAGGATTTGCTGCACGAGTTTGTGGCCGATTTCCACTACAAACCGGCCGACCAGGAGACGGCCACGAGCGTCGCCGAGCAGGAAAAGCTGGCCGAAGCCAGATCACACTGTCTGTCCTACCTGCTGCTGTGGGACTGTATTCTCGGTATCTGTGCCAAAGCTCCGTCCGAGCTGCGATCGATCTACACTTCCTGGATATCGCGCAACGAGTTTGAGGAGCTGCTCCTGCCCGTACTCTTCAAGCTGATGCCACCGGAATTACTGCGCAATCCGGACTCCTGTGCGGTTTATGGACAAGCGATGTTTGCCAGCTTGGAGTGGAATCAAATTAAGAATCCAAACACAAAGCTGGAACGTTACGCCTGCCATCTGTACGCCCAAACGCTGCGCCATCTGCCGGTAATACTGCGCCGATGGTTCAACGGGCTAAACCATCGCTACTCCACGATCGTGAGCAAGATAACGGCCAACTCGGTGTCGGGCTTGCTGTGCCAGGAGGAGTTCCAGGCCCTGCTGGAACGCAAGGACCGGCAGGACAACATGCAGATCAAGGTGCACTCGGCCCTGCGCCAGGTGATGGCCGTGTACTCGATCGACGAGGCAAAGGTGGAGCTGCACATAACGCTGCCGAGCAACTTTCCGCTCGGTGCGGTCACGGTGGAGGGTGGCAAGCAGATCGGCGGAC]

[+] EMBL BX618778             [CGCTCTCGATCGGGCTGGTACAGCGTGACCAGGAGCAGCTGCTGAAGCGCACCGAGTCAACCGAGCGGCAGCAGGAGAGTGGCGAGGAAGCGGACGATAGCTGGCATCTGCTGGAGCGTTTCCGACTACCGCTGGACGAGTACCAGGATTTGCTGCACGAGTTTGTGGCCGATTTCCACTACAAACCGGCCGACCAGGAGACGGCCACGAGCGTCGCCGAGCAGGAAAAGCTGGCCGAAGCCAGATCACACTGTCTGTCCTACCTGCTGCTGTGGGACTGTATTCTCGGTATCTGTGCCAAAGCTCCGTCCGAGCTGCGATCGATCTACACTTCCTGGATATCGCGCAACGAGTTTGAGGAGCTGCTCCTGCCCGTACTCTTCAAGCTGATGCCACCGGAAT                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BX618855             [                                                                                                                                                                                    ACAAACCGGCCGACCAGGAGACGGCCACGAGCGTCGCCGAGCAGGAAAAGCTGGCCGAAGCCAGATCACACTGTCTGTCCTACCTGCTGCTGTGGGACTGTATTCTCGGTATCTGTGCCAAAGCTCCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL BX617499             [                                                                                                                                                                                                                        CCGAGCAGGAAAAGCTGGCCGAAGCCAGATCACACTGTCTGTCCTACCTGCTGCTGTGGGACTGTATTCTCGGTATCTGTGCCAAAGCTCCGTCCGAGCTGCGATCGATCTACACTTCCTGGATATCGCGCAACGAGTTTGAGGAGCTGCTCCTGCCCGTACTCTTCAAGCTGATGCCACCGGAATTACTGCGCAATCCGGACTCCTGTGCGGTTTATGGACAAGCGATGTTTGCCAGCTTGGAGTGGAATCAAATTAAGAATCCAAACACAAAGCTGGAACGTTACGCCTGCCATCTGTACGCCCAAACGCTGCGCCATCTGCCGGTAATACTGCGCCGATGGTTCAACGGGCTAAACCATCGCTACTCCACGATCGTGAGCAAGATAACGGCCAACTCGGTGTCGGGCTTGCTGTGCCAGGAGGAGTTCCAGGCCCTGCTGGAACGCAAGGACCGGCAGGACAACATGCAGATCAAGGTGCACTCGGCCCTGCGCCAGGTGATGGCCGTGTACTCGATCGACGAGGCAAAGGTGGAGCTGCACATAACGCTGCCGAGCAACTTTCCGCTCGGTGCGGTCACGGTGGAGGGTGGCAAGCAGATCGGCGGAC]




>consensus_5411#0
CGCTCTCGATCGGGCTGGTACAGCGTGACCAGGAGCAGCTGCTGAAGCGCACCGAGTCAA
CCGAGCGGCAGCAGGAGAGTGGCGAGGAAGCGGACGATAGCTGGCATCTGCTGGAGCGTT
TCCGACTACCGCTGGACGAGTACCAGGATTTGCTGCACGAGTTTGTGGCCGATTTCCACT
ACAAACCGGCCGACCAGGAGACGGCCACGAGCGTCGCCGAGCAGGAAAAGCTGGCCGAAG
CCAGATCACACTGTCTGTCCTACCTGCTGCTGTGGGACTGTATTCTCGGTATCTGTGCCA
AAGCTCCGTCCGAGCTGCGATCGATCTACACTTCCTGGATATCGCGCAACGAGTTTGAGG
AGCTGCTCCTGCCCGTACTCTTCAAGCTGATGCCACCGGAATTACTGCGCAATCCGGACT
CCTGTGCGGTTTATGGACAAGCGATGTTTGCCAGCTTGGAGTGGAATCAAATTAAGAATC
CAAACACAAAGCTGGAACGTTACGCCTGCCATCTGTACGCCCAAACGCTGCGCCATCTGC
CGGTAATACTGCGCCGATGGTTCAACGGGCTAAACCATCGCTACTCCACGATCGTGAGCA
AGATAACGGCCAACTCGGTGTCGGGCTTGCTGTGCCAGGAGGAGTTCCAGGCCCTGCTGG
AACGCAAGGACCGGCAGGACAACATGCAGATCAAGGTGCACTCGGCCCTGCGCCAGGTGA
TGGCCGTGTACTCGATCGACGAGGCAAAGGTGGAGCTGCACATAACGCTGCCGAGCAACT
TTCCGCTCGGTGCGGTCACGGTGGAGGGTGGCAAGCAGATCGGCGGAC

consensusID : consensus_5411#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 240
fasta sequence

                              [GAAATTTCCCCCGAGGTTNCATGGACGAGTACCAGGATTTGCTGCACGAGTTTGTGGCCGATTTCCACTACAAACCGGCCGACAGGAGACGGCCACGAGCGTCGCCGAGCAGGAAAAGCTGGCCGAGGGCCAGATCGCACTGTCTGTCCTACCTGCTGCTGTGGGACTGTATTCTCGGTATCTGTGCCAAAGCTCCGTCCGAGCTGCGATCGATCTACACTTCCTGGATATCGCGCAACG]

[+] EMBL AL933199             [GAAATTTCCCCCGAGGTTNCATGGACGAGTACCAGGATTTGCTGCACGAGTTTGTGGCCGATTTCCACTACAAACCGGCCGACAGGAGACGGCCACGAGCGTCGCCGAGCAGGAAAAGCTGGCCGAGGGCCAGATCGCACTGTCTGTCCTACCTGCTGCTGTGGGACTGTATTCTCGGTATCTGTGCCAAAGCTCCGTCCGAGCTGCGATCGATCTACACTTCCTGGATATCGCGCAACG]




>consensus_5411#1
GAAATTTCCCCCGAGGTTNCATGGACGAGTACCAGGATTTGCTGCACGAGTTTGTGGCCG
ATTTCCACTACAAACCGGCCGACAGGAGACGGCCACGAGCGTCGCCGAGCAGGAAAAGCT
GGCCGAGGGCCAGATCGCACTGTCTGTCCTACCTGCTGCTGTGGGACTGTATTCTCGGTA
TCTGTGCCAAAGCTCCGTCCGAGCTGCGATCGATCTACACTTCCTGGATATCGCGCAACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5411#0      CGCTCTCGATCGGGCTGGTACAGCGTGACCAGGAGCAGCTGCTGAAGCGCACCGAGTCAA 60
consensus_5411#1      ------------------------------------------------------------
                                                                                  

consensus_5411#0      CCGAGCGGCAGCAGGAGAGTGGCGAGGAAGCGGACGATAGCTGGCATCTGCTGGAGCGTT 120
consensus_5411#1      ----------------------------------------------------GAAATTTC 8
                                                                          * *   * 

consensus_5411#0      TCCGACTACCGC-TGGACGAGTACCAGGATTTGCTGCACGAGTTTGTGGCCGATTTCCAC 179
consensus_5411#1      CCCCGAGGTTNCATGGACGAGTACCAGGATTTGCTGCACGAGTTTGTGGCCGATTTCCAC 68
                       **        * ***********************************************

consensus_5411#0      TACAAACCGGCCGACCAGGAGACGGCCACGAGCGTCGCCGAGCAGGAAAAGCTGGCCGAA 239
consensus_5411#1      TACAAACCGGCCGAC-AGGAGACGGCCACGAGCGTCGCCGAGCAGGAAAAGCTGGCCGAG 127
                      *************** ******************************************* 

consensus_5411#0      G-CCAGATCACACTGTCTGTCCTACCTGCTGCTGTGGGACTGTATTCTCGGTATCTGTGC 298
consensus_5411#1      GGCCAGATCGCACTGTCTGTCCTACCTGCTGCTGTGGGACTGTATTCTCGGTATCTGTGC 187
                      * ******* **************************************************

consensus_5411#0      CAAAGCTCCGTCCGAGCTGCGATCGATCTACACTTCCTGGATATCGCGCAACGAGTTTGA 358
consensus_5411#1      CAAAGCTCCGTCCGAGCTGCGATCGATCTACACTTCCTGGATATCGCGCAACG------- 240
                      *****************************************************       

consensus_5411#0      GGAGCTGCTCCTGCCCGTACTCTTCAAGCTGATGCCACCGGAATTACTGCGCAATCCGGA 418
consensus_5411#1      ------------------------------------------------------------
                                                                                  

consensus_5411#0      CTCCTGTGCGGTTTATGGACAAGCGATGTTTGCCAGCTTGGAGTGGAATCAAATTAAGAA 478
consensus_5411#1      ------------------------------------------------------------
                                                                                  

consensus_5411#0      TCCAAACACAAAGCTGGAACGTTACGCCTGCCATCTGTACGCCCAAACGCTGCGCCATCT 538
consensus_5411#1      ------------------------------------------------------------
                                                                                  

consensus_5411#0      GCCGGTAATACTGCGCCGATGGTTCAACGGGCTAAACCATCGCTACTCCACGATCGTGAG 598
consensus_5411#1      ------------------------------------------------------------
                                                                                  

consensus_5411#0      CAAGATAACGGCCAACTCGGTGTCGGGCTTGCTGTGCCAGGAGGAGTTCCAGGCCCTGCT 658
consensus_5411#1      ------------------------------------------------------------
                                                                                  

consensus_5411#0      GGAACGCAAGGACCGGCAGGACAACATGCAGATCAAGGTGCACTCGGCCCTGCGCCAGGT 718
consensus_5411#1      ------------------------------------------------------------
                                                                                  

consensus_5411#0      GATGGCCGTGTACTCGATCGACGAGGCAAAGGTGGAGCTGCACATAACGCTGCCGAGCAA 778
consensus_5411#1      ------------------------------------------------------------
                                                                                  

consensus_5411#0      CTTTCCGCTCGGTGCGGTCACGGTGGAGGGTGGCAAGCAGATCGGCGGAC 828
consensus_5411#1      --------------------------------------------------