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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5412#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 652 fasta sequence
[CCGCGGACGCGTGGGTGAGCCTGCATTCGTGCACCAGTGCAACCAGCGACGGAACTCACCCAGATAGTGGCCTGTGAACGTAGTGGTGGTGGTGGTGATGTACTCAACGCCTGTACAATGTTGTGTGAGCAAGTAGTGAAGTAAAAAGCAACAAGAACGGCAATATTTATCTACCCCCGAAGGGTAAGACTGCCCCCCGCCTGGGACTGCGATCCGGTGGGCCTTGTGTCTTTCCGCGGGGAACTTCCGGGTGGTCGCTGCACGATAGATTAAAAAGCACGGATTTTATTGCGCATTCTCTCGCTCGCTGCGCGTGAAGCTGTGTAGTGAAGGGAACAATAATTAAGTGAAATGATTTTTGCCTGGCAACGGCAACCGAACGGCAGCCCGAACCACCCGAACGGAGGGCAGCAGCAGCAGCATCCCAACCGGTACAATGTAACCGACCACCGTGGCGTCTGTTTTGTGGTTGTTCAACAGCAGCAGCAGCAGCAGCACCACCACTGCCGGTGGCACCGGAACGCGTAGAGCACGCCCGAGCGACGCCGACACCGACAGCCTCCGACAAGCTTCCAGTTTTTTTGCCAAAAACAAAGGGGGGGTGTGTGTGTGGTTTTTTTGTTTGCTACAGAAGCGCACCGCTGTACCAGCT]
[+] EMBL BM656025 [CCGCGGACGCGTGGGTGAGCCTGCATTCGTGCACCAGTGCAACCAGCGACGGAACTCACCCAGATAGTGGCCTGTGAACGTAGTGGTGGTGGTGGTGATGTACTCAACGCCTGTACAATGTTGTGTGAGCAAGTAGTGAAGTAAAAAGCAACAAGAACGGCAATATTTATCTACCCCCGAAGGGTAAGACTGCCCCCCGCCTGGGACTGCGATCCGGTGGGCCTTGTGTCTTTCCGCGGGGAACTTCCGGGTGGTCGCTGCACGATAGATTAAAAAGCACGGATTTTATTGCGCATTCTCTCGCTCGCTGCGCGTGAAGCTGTGTAGTGAAGGGAACAATAATTAAGTGAAATGATTTTTGCCTGGCAACGGCAACCGAACGGCAGCCCGAACCACCCGAACGGAGGGCAGCAGCAGCAGCATCCCAACCGGTACAATGTAACCGACCACCGTGGCGTCTGTTTTGTGGTTGTTCAACAGCAGCAGCAGCAGCAGCACCACCACTGCCGGTGGCACCGGAACGCGTAGAGCACGCCCGAGCGACGCCGACACCGACAGCCTCCGACAAGCTTCCAGTTTTTTTGCCAAAAACAAAGGGGGGGTGTGTGTGTGGTTTTTTTGTTTGCTACAGAAGCGCACCGCTGTACCAGCT]
consensusID : consensus_5412#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 638 fasta sequence
[CCGGCTTCTCTCTATTTCCCAGTGCACCAGTGCAACCAGCGACGGAACTCACCCAGATAGTGGCCTGTGAACGTAGTGGTGGTGGTGGTGATGTACTCAACGCCTGTACAATGTTGTGTGAGCAAGTAGTGAAGTAAAAAGCAACAAGAACGGCAATATTTATCTACCCCCGAAGGGTAAGACTGCCCCCCGCCTGGGACTGCGATCCGGTGGGCCTTGTGTCTTTCCGCGGGGAACTTCCGGGTGGTCGCTGCACGATAGATTAAAAAGCACGGATTTTATTGCGCATTCTCTCGCTCGCTGCGCGTGAAGCTGTGTAGTGAAGGGAACAATAATTAAGTGAAATGATTTTTGCCTGGCAACGGCAACCGAACGGCAGCCCGAACCACCCGAACGGAGGGCAGCAGCAGCAGCATCCCAACCGGTACAATGTAACCGACCACCGTGGCGTCTGTTTTGTGGTTGTTCAACAGCAGCAGCAGCAGCAGCACCACCACTGCCGGTGGCACCGGAACGCGTAGAGCACGCCCGAGCGACGCCGACACCGACAGCCTCCGACAAGCTTCCAGTTTTTTTGCCAAAAACAAAGGGGGGTGTGGGGGGTGGTTTTTTGTTTGCTACAGAAGCGCACCGCTGTA]
[+] EMBL BM653689 [CCGGCTTCTCTCTATTTCCCAGTGCACCAGTGCAACCAGCGACGGAACTCACCCAGATAGTGGCCTGTGAACGTAGTGGTGGTGGTGGTGATGTACTCAACGCCTGTACAATGTTGTGTGAGCAAGTAGTGAAGTAAAAAGCAACAAGAACGGCAATATTTATCTACCCCCGAAGGGTAAGACTGCCCCCCGCCTGGGACTGCGATCCGGTGGGCCTTGTGTCTTTCCGCGGGGAACTTCCGGGTGGTCGCTGCACGATAGATTAAAAAGCACGGATTTTATTGCGCATTCTCTCGCTCGCTGCGCGTGAAGCTGTGTAGTGAAGGGAACAATAATTAAGTGAAATGATTTTTGCCTGGCAACGGCAACCGAACGGCAGCCCGAACCACCCGAACGGAGGGCAGCAGCAGCAGCATCCCAACCGGTACAATGTAACCGACCACCGTGGCGTCTGTTTTGTGGTTGTTCAACAGCAGCAGCAGCAGCAGCACCACCACTGCCGGTGGCACCGGAACGCGTAGAGCACGCCCGAGCGACGCCGACACCGACAGCCTCCGACAAGCTTCCAGTTTTTTTGCCAAAAACAAAGGGGGGTGTGGGGGGTGGTTTTTTGTTTGCTACAGAAGCGCACCGCTGTA]
consensusID : consensus_5412#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 585 fasta sequence
[CCGATTCGGTACGGTACGAACCCGGCGCGGGTACGAACGTTTGCGTGTGCGTTTGCGCGTGTGTTGTTCGGTGGTTGCGGGAAAGAAACACCCAGCACCTACCGCCCTGCTCGGGGCAAAGAGCAGGCCTGATGGTGGCTTACACACCCGTGGGCAGTGTGATTTAGTTTTCGGTTTGTTACACCGTGCGACAGTTCCCGGTAGTGTGGCAATCCTGGTTTTACGCATAAATTTATTTTAATTGCATATCGATTCCGGCGTGCACCAGTGCAACCAGCGACGGAACTCACCCAGATAGTGGCCTGTGAACGTAGTGGTGGTGGGTGGTGATGTACTCAACGCCTGTACAATGTTGTGTGAGCAAGTAGTGAAGTAAAAAGCAACAAGAACGGCAATATTTATCTACCCCCGAAGGGTAAGACTGCCCCCCGCCTGGGACTGCGATCCGGTGGGCCTTGTGTCTTTCCGCGGGGAACTTCCGGGTGGTCGCTGCACGATAGATTAAAAAGCACGGATTTTATTGCGCATTCTCTCGCTCGCTGCGCGTGAAGCTGTGTAGTGAAGGGAACATAATTAAGTGAAATG]
[+] EMBL BM639120 [CCGATTCGGTACGGTACGAACCCGGCGCGGGTACGAACGTTTGCGTGTGCGTTTGCGCGTGTGTTGTTCGGTGGTTGCGGGAAAGAAACACCCAGCACCTACCGCCCTGCTCGGGGCAAAGAGCAGGCCTGATGGTGGCTTACACACCCGTGGGCAGTGTGATTTAGTTTTCGGTTTGTTACACCGTGCGACAGTTCCCGGTAGTGTGGCAATCCTGGTTTTACGCATAAATTTATTTTAATTGCATATCGATTCCGGCGTGCACCAGTGCAACCAGCGACGGAACTCACCCAGATAGTGGCCTGTGAACGTAGTGGTGGTGGGTGGTGATGTACTCAACGCCTGTACAATGTTGTGTGAGCAAGTAGTGAAGTAAAAAGCAACAAGAACGGCAATATTTATCTACCCCCGAAGGGTAAGACTGCCCCCCGCCTGGGACTGCGATCCGGTGGGCCTTGTGTCTTTCCGCGGGGAACTTCCGGGTGGTCGCTGCACGATAGATTAAAAAGCACGGATTTTATTGCGCATTCTCTCGCTCGCTGCGCGTGAAGCTGTGTAGTGAAGGGAACATAATTAAGTGAAATG]
consensusID : consensus_5412#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 584 fasta sequence
[GGCAGAATTCGGCACGATTNAGAAAGAAACACCCAGCACCTACCCGCCCTGTTCGGGGCAAAGAGCAGGCCTGATGGTGGCTTACACACCCGTGGGCAGTGTGATTTAGTTTTCTGGTTTGTTACACCGTGCGACAGTTCCCGTGCACCAGTGCAACCAGCGACGGAACTCACCCAGATAGTGGCCTGTGAACGTAGTGGTGGTGGTGGTGATGTACTCAACGCCTGTACAATGTTGTGTGAGCAAAGTAGTGAAGTAAAAAGCAACAAGAACGGCAATATTTATCTACGCCCCGAAGGGTAAGACTGGCCCCCGACTGGGACTGCGATCCGGTGGGCCTTGTGTCTTTCCGCGGGTGAACTTCCGGGTGGTCGCTGCACAGATAGATTAACAAAGCACGGATTTATATTGCGCATTCTCATCGCTCGCTGCGCGTGAAGCTGTGTAGTGAAGGGAACCAATTAATTAAAGGTTGACAAACTGACTTTCTAATGGCCTTGGGGCAAACGGGNACAACGCCGAAACGGGCAGGACCGAAACCAACCNCGNAACCGGAAGGGGCCAGCGCAGCACAGCCAGGCATC]
[+] EMBL BX467182 [GGCAGAATTCGGCACGATTNAGAAAGAAACACCCAGCACCTACCCGCCCTGTTCGGGGCAAAGAGCAGGCCTGATGGTGGCTTACACACCCGTGGGCAGTGTGATTTAGTTTTCTGGTTTGTTACACCGTGCGACAGTTCCCGTGCACCAGTGCAACCAGCGACGGAACTCACCCAGATAGTGGCCTGTGAACGTAGTGGTGGTGGTGGTGATGTACTCAACGCCTGTACAATGTTGTGTGAGCAAAGTAGTGAAGTAAAAAGCAACAAGAACGGCAATATTTATCTACGCCCCGAAGGGTAAGACTGGCCCCCGACTGGGACTGCGATCCGGTGGGCCTTGTGTCTTTCCGCGGGTGAACTTCCGGGTGGTCGCTGCACAGATAGATTAACAAAGCACGGATTTATATTGCGCATTCTCATCGCTCGCTGCGCGTGAAGCTGTGTAGTGAAGGGAACCAATTAATTAAAGGTTGACAAACTGACTTTCTAATGGCCTTGGGGCAAACGGGNACAACGCCGAAACGGGCAGGACCGAAACCAACCNCGNAACCGGAAGGGGCCAGCGCAGCACAGCCAGGCATC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5412#2 CCGATTCGGTACGGTACGAACCCGGCGCGGGTACGAACGTTTGCGTGTGCGTTTGCGCGT 60
consensus_5412#3 -----------------------------------------------------------G 1
consensus_5412#0 ------------------------------------------------------------
consensus_5412#1 ------------------------------------------------------------
consensus_5412#2 GTGTTGTTCGGTGGTTGCGGGAAAGAAACACCCAGCACCTACC-GCCCTGCTCGGGGCAA 119
consensus_5412#3 GCAGAATTCGGCACGATTNAGAAAGAAACACCCAGCACCTACCCGCCCTGTTCGGGGCAA 61
consensus_5412#0 ------------------------------------------------------------
consensus_5412#1 ------------------------------------------------------------
consensus_5412#2 AGAGCAGGCCTGATGGTGGCTTACACACCCGTGGGCAGTGTGATTTAGTTTTC-GGTTTG 178
consensus_5412#3 AGAGCAGGCCTGATGGTGGCTTACACACCCGTGGGCAGTGTGATTTAGTTTTCTGGTTTG 121
consensus_5412#0 ------------------------------------------------------------
consensus_5412#1 ------------------------------------------------------------
consensus_5412#2 TTACACCGTGCGACAGTTCCCGGTAGTGTGGCAATCCTGGTTTTACGCATAAATTTATTT 238
consensus_5412#3 TTACACCGTGCGACAGTTCCCG-------------------------------------- 143
consensus_5412#0 ---------------------------------------------------CCGCGGACG 9
consensus_5412#1 ------------------------------------------------------------
consensus_5412#2 TAATTGCATATCGATTCCGGCGTGCACCAGTGCAACCAGCGACGGAACTCACCCAGATAG 298
consensus_5412#3 ----------------------TGCACCAGTGCAACCAGCGACGGAACTCACCCAGATAG 181
consensus_5412#0 CGTGGGTGAGCCTGCATTC--GTGCACCAGTGCAACCAGCGACGGAACTCACCCAGATAG 67
consensus_5412#1 CCGGCTTCTCTCTATTTCCCAGTGCACCAGTGCAACCAGCGACGGAACTCACCCAGATAG 60
**************************************
consensus_5412#2 TGGCCTGTGAACGTAGTGGTGGTGGGTGGTGATGTACTCAACGCCTGTACAATGTTGTGT 358
consensus_5412#3 TGGCCTGTGAACGTAGTGGTGGTGG-TGGTGATGTACTCAACGCCTGTACAATGTTGTGT 240
consensus_5412#0 TGGCCTGTGAACGTAGTGGTGGTGG-TGGTGATGTACTCAACGCCTGTACAATGTTGTGT 126
consensus_5412#1 TGGCCTGTGAACGTAGTGGTGGTGG-TGGTGATGTACTCAACGCCTGTACAATGTTGTGT 119
************************* **********************************
consensus_5412#2 GAGCAA-GTAGTGAAGTAAAAAGCAACAAGAACGGCAATATTTATCTAC-CCCCGAAGGG 416
consensus_5412#3 GAGCAAAGTAGTGAAGTAAAAAGCAACAAGAACGGCAATATTTATCTACGCCCCGAAGGG 300
consensus_5412#0 GAGCAA-GTAGTGAAGTAAAAAGCAACAAGAACGGCAATATTTATCTAC-CCCCGAAGGG 184
consensus_5412#1 GAGCAA-GTAGTGAAGTAAAAAGCAACAAGAACGGCAATATTTATCTAC-CCCCGAAGGG 177
****** ****************************************** **********
consensus_5412#2 TAAGACTGCCCCCCGCCTGGGACTGCGATCCGGTGGGCCTTGTGTCTTTCCGCGGG-GAA 475
consensus_5412#3 TAAGACTGGCCCCCGACTGGGACTGCGATCCGGTGGGCCTTGTGTCTTTCCGCGGGTGAA 360
consensus_5412#0 TAAGACTGCCCCCCGCCTGGGACTGCGATCCGGTGGGCCTTGTGTCTTTCCGCGGG-GAA 243
consensus_5412#1 TAAGACTGCCCCCCGCCTGGGACTGCGATCCGGTGGGCCTTGTGTCTTTCCGCGGG-GAA 236
******** ****** **************************************** ***
consensus_5412#2 CTTCCGGGTGGTCGCTGCAC-GATAGATTAA-AAAGCACGGATTT-TATTGCGCATTCTC 532
consensus_5412#3 CTTCCGGGTGGTCGCTGCACAGATAGATTAACAAAGCACGGATTTATATTGCGCATTCTC 420
consensus_5412#0 CTTCCGGGTGGTCGCTGCAC-GATAGATTAA-AAAGCACGGATTT-TATTGCGCATTCTC 300
consensus_5412#1 CTTCCGGGTGGTCGCTGCAC-GATAGATTAA-AAAGCACGGATTT-TATTGCGCATTCTC 293
******************** ********** ************* **************
consensus_5412#2 -TCGCTCGCTGCGCGTGAAGCTGTGTAGTGAAGGGAACA-TAATTAAGTGAAATG----- 585
consensus_5412#3 ATCGCTCGCTGCGCGTGAAGCTGTGTAGTGAAGGGAAC--CAATTAATTAAAGGTTGACA 478
consensus_5412#0 -TCGCTCGCTGCGCGTGAAGCTGTGTAGTGAAGGGAACAATAATTAAGTGAAATG----A 355
consensus_5412#1 -TCGCTCGCTGCGCGTGAAGCTGTGTAGTGAAGGGAACAATAATTAAGTGAAATG----A 348
************************************* ****** * **
consensus_5412#2 ------------------------------------------------------------
consensus_5412#3 AACTGACTTTCTAATGGCCTTGGGGCAAACGGGNACAACGCCGAAACGGGCAGGACCGAA 538
consensus_5412#0 TTTTTGCCTGGCAACGGCAACCGAACGGCAGCCCGAACCACCCGAACGGAGGGCAGCAGC 415
consensus_5412#1 TTTTTGCCTGGCAACGGCAACCGAACGGCAGCCCGAACCACCCGAACGGAGGGCAGCAGC 408
consensus_5412#2 ------------------------------------------------------------
consensus_5412#3 ACCAACCNCGNAACCGGAAGGGGCCAGCGCAGCACAGCCAGGCATC-------------- 584
consensus_5412#0 AGCAGCATCCCAACCGGTACAATGTAACCGACCACCGTGGCGTCTGTTTTGTGGTTGTTC 475
consensus_5412#1 AGCAGCATCCCAACCGGTACAATGTAACCGACCACCGTGGCGTCTGTTTTGTGGTTGTTC 468
consensus_5412#2 ------------------------------------------------------------
consensus_5412#3 ------------------------------------------------------------
consensus_5412#0 AACAGCAGCAGCAGCAGCAGCACCACCACTGCCGGTGGCACCGGAACGCGTAGAGCACGC 535
consensus_5412#1 AACAGCAGCAGCAGCAGCAGCACCACCACTGCCGGTGGCACCGGAACGCGTAGAGCACGC 528
consensus_5412#2 ------------------------------------------------------------
consensus_5412#3 ------------------------------------------------------------
consensus_5412#0 CCGAGCGACGCCGACACCGACAGCCTCCGACAAGCTTCCAGTTTTTTTGCCAAAAACAAA 595
consensus_5412#1 CCGAGCGACGCCGACACCGACAGCCTCCGACAAGCTTCCAGTTTTTTTGCCAAAAACAAA 588
consensus_5412#2 ---------------------------------------------------------
consensus_5412#3 ---------------------------------------------------------
consensus_5412#0 GGGGGGGTGTGTGTGTGGTTTTTTTGTTTGCTACAGAAGCGCACCGCTGTACCAGCT 652
consensus_5412#1 GGGGGG-TGTGGGGGGTGGTTTTTTGTTTGCTACAGAAGCGCACCGCTGTA------ 638
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||