|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5415#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1183 fasta sequence
[CGAGAAAAACGGAACATTGAATATCCAAACAAGCTGTGCGCACCGAAGCGCGAATACGCCGACATTGCCAGCCGCGGGTCCTACTCGTTCTACGATAACTGCAAACGGTAAGGGATGACCCAAGCGTTGCGGCACACTCGTTACATCTCATCTCAGCCCCCGCTAAGCCAGATTTCATGCAACAAACTCAGCACCACCACGCGCCATCACGAGGACACGTGCGTCATATGTGATTAATGCAGCGTATATCGCGTAGTTAGCAGCCTTCTAGCGTGCCTTCTAACGATTTAACGACCCACCTGTGTGTGTGTGTGTGTGTGTTTTTTGGTTTTGTTATCTCTCACTCTCTCCATCTCTCTGTGTATTTCAACGCCCTTCTACTAAACCAGAGACACACTTTGTTCGCCCAGTGCGCGAGATCCTCCAGAGGGTGAGGGAGGAGGAGGACCCACCTTCATCCCTCCGTGTGTCGTCCCCTTAAATCATTTCTGTGAAATATTCGACATCTCGCGCGTAGTACACTGCCTTTCCATAGTTTTTCCTCTTAGAACAAGTACCCCAGTAGATGTTATTAGGTGGAGAGTGTCCAAACAGTTCAGCTCGATTAGTCGATTAGCCTGATCGTTCGTGTATAGTGGTATGATTTTATGATAGTGGTATGGCCTTCGCCAGAGGCCGAACACAACCCACACTTGATTTGGTTTGTGTGAATAACAACAACAACAACAACAACAATATTTTGCATTGGTAGAGATAGGCCAAAGTGATATAATATTCCCAGATATCGTGCAGGGTGAAATGTTGAAAGCCTTGCCGGCAACCCGCT-GGCAAGCCAGGAATGGTCTCCGTTTGTTCATTTCGTTCACTTTCTTTACCCCGCCCCATCGGGAGCCATATATGTGTAATGCTTTTCTTTTGTTTTGAATTTGTTCAAATACAATACGCGTAGTAGAATTAGCTGTAAGCAGAGACAGTCCTGCCCGGAAGAGGATACTTCAGATCGGGATCAGAGGCCGACGTTTCGAGGCGAGGAAAGGCAAAGGTTGTAGAAATAAGTTCGGTGTGGCGCCATGGCCCCTTCCGCCGGTCGGTGCGCGACACACCTTTCCATGCGTTTACTTTATTACCGTTAGCAAACTGAAAACATTATTGTGATACCTATACGAAAAGAATGACTGTAAAT]
[+] EMBL BX623555 [CGAGAAAAACGGAACATTGAATATCCAAACAAGCTGTGCGCACCGAAGCGCGAATACGCCGACATTGCCAGCCGCGGGTCCTACTCGTTCTACGATAACTGCAAACGGTAAGGGATGACCCAAGCGTTGCGGCACACTCGTTACATCTCATCTCAGCCCCCGCTAAGCCAGATTTCATGCAACAAACTCAGCACCACCACGCGCCATCACGAGGACACGTGCGTCATATGTGATTAATGCAGCGTATATCGCGTAGTTAGCAGCCTTCTAGCGTGCCTTCTAACGATTTAACGACCCACCTGTGTGTGTGTGTGTGTGTGTTTTTTGGTTTTGTTATCTCTCACTCTCTCCATCTCTCTGTGTATTTCAACGCCCTTCTACTAAACCAGAGACACACTTTGTTCGCCCAGTGCGCGAGATCCTCCAGAGGGTGAGGGAGGAGGAGGACCCACCTTCATCCCTCCGTGTGTCGTCCCCTTAAATCATTTCTGTGAAATATTCGACATCTCGCGCGTAGTACACTGCCTTTCCATAGTTTTTCCTCTTAGAACAAGTACCCCAGTAGATGTTATTAGGTGGAGAGTGTCCAAACAGTTCAGCTCGATTAGTCGATTAGCCTGATCGTTCGTGTATAGTGGTATGATTTTATGATAGTGGTATGGCCTTCGCCAGAGGCCGAACACAACCCACACTTGATTTGGTTTGTGTGAATAACAACNACAACAACAACAACNATATTTTGCATTGGTAGAGATANGNCAAAGTGATATAATATTCCCAGATATCGTGCAGGGTGAAATGTTGAAAGCCTTGCCGGCAACCCGCT GG ]
[+] EMBL BX617450 [ ATCTCTCACTCTCTCCATCTCTCTGTGTATTTCAACGCCCTTCTACTAAATCAGAGACACACTTTGTTCGCCCAGTGCGCGAGATCCTCCAGAGGGTGAGGGAGGAGGAGGACCCACCTTCATCCCTCCGTGTGTCGTCCCCTTAAATCATTTCTGTGAAATATTCGACATCTCGCGCGTAGTACACTGCCTTTCCATAGTTTTTCCTCTTAGAACAAGTACCCCAGTAGATGTTATTAGGTGGAGAGTGTCCAAACAGTTCAGCTCGATTAGTCGATTAGCCTGATCGTTCGTGTATAGTGGTATGATTTTATGATAGTGGTATGGCCTTCGCCAGAGGCCGAACACAACCCACACTTGATTTGGTTTGTGTGAATAACAACAACAACAACAACAACAATATTTTGCATTGGTAGAGATAGGCCAAAGTGATATAATATTCCCAGATATCGTGCAGGGTGAAATGTTGAAAGCCTTGCCGGCAACCCGCT GGCAAGCCAGGAA ]
[-] EMBL CNS09DOD [ atAACAACAACAACAACAACAACAACAATTTTTTGCATTGGTAGAGATAGGCCAAAGTGATATAATATTCCCAGATATCGTGCAGGGTGAAATGTTGAAAGCCTTGCCGGCAACCCGCTAGGCAAGTCAGGAATGGTCTCCGTTTGTTCATTTCGTTCACTTTCTTTACCCCGCCCCATCGGGAGCCATATATGTGTAATGCTTTTCTTTTGTTTTGAATTTGTTCAAATACAATACGCGTAGTAGAATTAGCTGTAAGCAGAGACAGTCCTGCCCGGAAGAGGATACTTCAGATCGGGATCAGAGGCCGACGTTTCGAGGCGAGGAAAGGCAAAGGTTGTAGAAATAAGTTCGGTGTGGCGCCATGGCCCCTTCCGCCGGTCGGTGCGCGACACACCTTTCCATGCGTTTACTTTATTACCGTTAGCAAACTGAAAACATTATTGTGATACCTATACGAAAAGAATGACTGTAAAT]
consensusID : consensus_5415#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 723 fasta sequence
[CTGGGTGCTTTTAACGATTTAACGACACACCTGTGTGTGTGTGTATTTTTGTTTTGTTATCTCTCACTCTCTCCATCTCTCTGTGTATTTCAACGCCCTTCTACTAAACCAGAAACACACTTTGTTCGCCCAGTGCGCGAGATCCTCCAGAGGGTGAGGGAGGAGGAGGACCCACCTTCATCCCTCCGTGTGTCGTCCCCTTAAATCATTTCTGTGAAATATTCGACATCTCGCGCGTAGTACACTGCCTTTCCATAGTTTTTCCTCTTAGAACAAGTACCCCAGTAGATGTTATTAGGTGGAGAGTGTCCAAACAGTTCAGCTCGATTAGTCGATTAGCCTGATCGTTCGTGTATAGTGGTATGATTTTAACCTTCGCCAGAGGCCGAACATAACCCACGCTTGATTTGGTTTGTGTGAATAACAACAACAACAACAACAACAACAATATTTTGCATTGGTAGAGATAGGCCAAAGTGATATAATATTCCCAGATATCGTGCAGGGTGAAATGTTGAAAGCCTTGCCGGCAACCCGCTGGCAAGTCAGGAATGGTCTCCGTTTGTTCATTTCGTTCACTTTCTTTACCCCGCCCCATCGGGAGCCATATATGTGTAATGCTTTTCTTTTGTTTTGAATTTGTTCAAATACAATACGCGTAGTAGAATTAGCTGTAAGAGAGACAGTTCTGCCCGGAAGAGGATACTTCAGATCGGGAACAAA]
[+] EMBL CNS09DOC [CTGGGTGCTTTTAACGATTTAACGACACACCTGTGTGTGTGTGTATTTTTGTTTTGTTATCTCTCACTCTCTCCATCTCTCTGTGTATTTCAACGCCCTTCTACTAAACCAGAAACACACTTTGTTCGCCCAGTGCGCGAGATCCTCCAGAGGGTGAGGGAGGAGGAGGACCCACCTTCATCCCTCCGTGTGTCGTCCCCTTAAATCATTTCTGTGAAATATTCGACATCTCGCGCGTAGTACACTGCCTTTCCATAGTTTTTCCTCTTAGAACAAGTACCCCAGTAGATGTTATTAGGTGGAGAGTGTCCAAACAGTTCAGCTCGATTAGTCGATTAGCCTGATCGTTCGTGTATAGTGGTATGATTTTAACCTTCGCCAGAGGCCGAACATAACCCACGCTTGATTTGGTTTGTGTGAATAACAACAACAACAACAACAACAACAATATTTTGCATTGGTAGAGATAGGCCAAAGTGATATAATATTCCCAGATATCGTGCAGGGTGAAATGTTGAAAGCCTTGCCGGCAACCCGCTGGCAAGTCAGGAATGGTCTCCGTTTGTTCATTTCGTTCACTTTCTTTACCCCGCCCCATCGGGAGCCATATATGTGTAATGCTTTTCTTTTGTTTTGAATTTGTTCAAATACAATACGCGTAGTAGAATTAGCTGTAAGAGAGACAGTTCTGCCCGGAAGAGGATACTTCAGATCGGGAACAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5415#0 CGAGAAAAACGGAACATTGAATATCCAAACAAGCTGTGCGCACCGAAGCGCGAATACGCC 60
consensus_5415#1 ------------------------------------------------------------
consensus_5415#0 GACATTGCCAGCCGCGGGTCCTACTCGTTCTACGATAACTGCAAACGGTAAGGGATGACC 120
consensus_5415#1 ------------------------------------------------------------
consensus_5415#0 CAAGCGTTGCGGCACACTCGTTACATCTCATCTCAGCCCCCGCTAAGCCAGATTTCATGC 180
consensus_5415#1 ------------------------------------------------------------
consensus_5415#0 AACAAACTCAGCACCACCACGCGCCATCACGAGGACACGTGCGTCATATGTGATTAATGC 240
consensus_5415#1 ------------------------------------------------------------
consensus_5415#0 AGCGTATATCGCGTAGTTAGCAGCCTTCTAGCGTGCCTTCTAACGATTTAACGACCCACC 300
consensus_5415#1 ---------------------------CTGG-GTGC-TTTTAACGATTTAACGACACACC 31
** * **** ** *************** ****
consensus_5415#0 TGTGTGTGTGTGTGTGTGTGTTTTTTGGTTTTGTTATCTCTCACTCTCTCCATCTCTCTG 360
consensus_5415#1 TGTGTGTGTGTGTA--------TTTTTGTTTTGTTATCTCTCACTCTCTCCATCTCTCTG 83
************* **** *********************************
consensus_5415#0 TGTATTTCAACGCCCTTCTACTAAACCAGAGACACACTTTGTTCGCCCAGTGCGCGAGAT 420
consensus_5415#1 TGTATTTCAACGCCCTTCTACTAAACCAGAAACACACTTTGTTCGCCCAGTGCGCGAGAT 143
****************************** *****************************
consensus_5415#0 CCTCCAGAGGGTGAGGGAGGAGGAGGACCCACCTTCATCCCTCCGTGTGTCGTCCCCTTA 480
consensus_5415#1 CCTCCAGAGGGTGAGGGAGGAGGAGGACCCACCTTCATCCCTCCGTGTGTCGTCCCCTTA 203
************************************************************
consensus_5415#0 AATCATTTCTGTGAAATATTCGACATCTCGCGCGTAGTACACTGCCTTTCCATAGTTTTT 540
consensus_5415#1 AATCATTTCTGTGAAATATTCGACATCTCGCGCGTAGTACACTGCCTTTCCATAGTTTTT 263
************************************************************
consensus_5415#0 CCTCTTAGAACAAGTACCCCAGTAGATGTTATTAGGTGGAGAGTGTCCAAACAGTTCAGC 600
consensus_5415#1 CCTCTTAGAACAAGTACCCCAGTAGATGTTATTAGGTGGAGAGTGTCCAAACAGTTCAGC 323
************************************************************
consensus_5415#0 TCGATTAGTCGATTAGCCTGATCGTTCGTGTATAGTGGTATGATTTTATGATAGTGGTAT 660
consensus_5415#1 TCGATTAGTCGATTAGCCTGATCGTTCGTGTATAGTGGTATGATTTTA------------ 371
************************************************
consensus_5415#0 GGCCTTCGCCAGAGGCCGAACACAACCCACACTTGATTTGGTTTGTGTGAATAACAACAA 720
consensus_5415#1 -ACCTTCGCCAGAGGCCGAACATAACCCACGCTTGATTTGGTTTGTGTGAATAACAACAA 430
******************** ******* *****************************
consensus_5415#0 CAACAACAACAACAA---TATTTTGCATTGGTAGAGATAGGCCAAAGTGATATAATATTC 777
consensus_5415#1 CAACAACAACAACAACAATATTTTGCATTGGTAGAGATAGGCCAAAGTGATATAATATTC 490
*************** ******************************************
consensus_5415#0 CCAGATATCGTGCAGGGTGAAATGTTGAAAGCCTTGCCGGCAACCCGCTGGCAAGCCAGG 837
consensus_5415#1 CCAGATATCGTGCAGGGTGAAATGTTGAAAGCCTTGCCGGCAACCCGCTGGCAAGTCAGG 550
******************************************************* ****
consensus_5415#0 AATGGTCTCCGTTTGTTCATTTCGTTCACTTTCTTTACCCCGCCCCATCGGGAGCCATAT 897
consensus_5415#1 AATGGTCTCCGTTTGTTCATTTCGTTCACTTTCTTTACCCCGCCCCATCGGGAGCCATAT 610
************************************************************
consensus_5415#0 ATGTGTAATGCTTTTCTTTTGTTTTGAATTTGTTCAAATACAATACGCGTAGTAGAATTA 957
consensus_5415#1 ATGTGTAATGCTTTTCTTTTGTTTTGAATTTGTTCAAATACAATACGCGTAGTAGAATTA 670
************************************************************
consensus_5415#0 GCTGTAAGCAGAGACAGTCCTGCCCGGAAGAGGATACTTCAGATCGGGATCAGAGGCCGA 1017
consensus_5415#1 GCTGTAAG-AGAGACAGTTCTGCCCGGAAGAGGATACTTCAGATCGGGAACAAA------ 723
******** ********* ****************************** ** *
consensus_5415#0 CGTTTCGAGGCGAGGAAAGGCAAAGGTTGTAGAAATAAGTTCGGTGTGGCGCCATGGCCC 1077
consensus_5415#1 ------------------------------------------------------------
consensus_5415#0 CTTCCGCCGGTCGGTGCGCGACACACCTTTCCATGCGTTTACTTTATTACCGTTAGCAAA 1137
consensus_5415#1 ------------------------------------------------------------
consensus_5415#0 CTGAAAACATTATTGTGATACCTATACGAAAAGAATGACTGTAAAT 1183
consensus_5415#1 ----------------------------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||