cluster # 5416

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Anopheles gambiae
cluster # 5416 cluster # 5416 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5416#0 length = 827 sequences # 2

consensus_5416#1 length = 743 sequences # 1
consensus_5416#2 length = 702 sequences # 1

consensusID : consensus_5416#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 827
fasta sequence

                              [ACGGTGCAAGGATCGATAGGACTGATGATGGGAGCAGCGTTGTAGATATTGGAAGCAATTTCGAGGAAGGACAGCATGACAACTCTGACGCCGGATATCACGAAGATGAAGAGGTGGACGATGACGATGAGGAGGAGGGCGAAGTGGACGATGAGGAGGAACGTCAACTGATGAGACAGAAACTGCTGGCAGGG-AACAGTTCCAAACGATTGCGTGGTAAGGATAGTTGCTGCTCCGCCGGATCTGTTGGTGCCGTTGGTGCTAACAGCA-TTATCGCTAGCAGTAGGCCCAGCGACGGCCCAAGTTTAGTTCCATTGCGCCGGAAACTAAGCTCTAAATCTAAGTCTGGTTCATTGGGAGGAGTTGCAGGCAGCAGTACGGGTCCGGGTTCCTCAGGAGGAACGTTGGCGGATGTACGAATGATTGATTTCGCGCACACGACGTTCGAAATTAAGAACGGCGGTGCATCGTTATGTAGCAGTGCAAATGTTAAGGTGCACCACGGTCCGGACAGTGGGTTCCTCCGTGGGCTCGACAGCCTCAAACGTATACTATCGGAAATATGTGAGGAATACTATTGAAGCGAAGCAACTCGGAGAGACGTGAAGTGGAAGGCACATAGTGCTGGAATGACTGTGTATAGATAGTGTAGTGAAAGAAGGCGGTGAGACGCACGAGCTGCGACTCAATGTTATGTACGTGCAATTTGCAATTGAAAATCGCCAGGATCGTGCGTCGTCGGTCGCGAATTCCGGACTCACAATAGTGTGATGTTTTAGCTTACATTTTCGATTTGTTTTACATTTGAATTTCTTAAAGTCCTCAAT]

[+] EMBL BX621686             [ACGGTGCAAGGATCGATAGGACTGATGATGGGAGCAGCGTTGTAGATATTGGAAGCAATTTCGAGGAAGGACAGCATGACAACTCTGACGCCGGATATCACGAAGATGAAGAGGTGGACGATGACGATGAGGAGGAGGGCGAAGTGGACGATGAGGAGGAACGTCAACTGATGAGACAGAAACTGCTGGCAGGG AACAGTTCCAAACGATTGCGTGGTAAGGATAGTTGCTGCTCCGCCGGATCTGTTGGTGCCGTTGGTGCTAACAGCA TTATCGCTAGCAGTAGGCCCAGCGACGGCCCAAGTTTAGTTCCATTGCGCCGGAAACTAAGCTCTAAATCTAAGTCTGGTTCATTGGGAGGAGTTGCAGGCAGCAGTACGGGTCCGGGTTCCTCAGGAGGAACGTTGGCGGATGTACGAATGATTGATTTCGCGCACACGACGTTCGAAATTAAGAACGGCGGTGCATCGTTATGTAGCAGTGCAAATGTTAAGGTGCACCACGGTCCGGACAGTGGGTTCCTCCGTGGGCTCGACAGCCTCAAACGTATACTATCGGAAATATGTGAGGAATACTATTGAAGCGAAGCAACTCGGAGAGACGTGAAGTGGAAGGCACATAGTGCTGGAATGACTGTGTATAGATAGTGTAGTGAAAGAAGGCGGTGAGACGCACGAGCTGCGACTCAATGTTATGTACGTGCAATTTGCAATTGAAAATCGCCAGGATCGTGCGTCGTCGGTCGCGAATTCCGGACTCACAATAGTGTGATGTTTTAGCTTACATTTTCGATTTGTTTTACATTTGAATTTCTTAAAGTCCTCAAT]
[+] EMBL AL933309             [                                                                                                    ggttaATGAA AGGTGGAC ATGAC ATGAGGAGGAGGGCGAANTGGACGATGAGGAGGAACGTCAACTGATGAGACAGAAACTGCTGGCAGGGCAACAGTTCCAAACGATTGCGTGGTAAGGATAGTTGCTGCTCCGCCGGATCTGTTGGTGCCGTTGGTGCTAACAGCACTTATCGCTAGCAGTAGGCCCAGCGACGGCCCAAGTTTAGTTCCATTGCGCCGGAAACTAAGCTCTAAATCTAAGTCTGGTTCATTGGGAGGAGTTGCAGGCAGTAGTACGGGTCCGGGTTCCTCAGGAGGAACGTTGGCGGATGTACGAATGATTGATTTCGCGCACACGACGTTCGAAATTAAGAACGGCGGTGCATCGTTATGTAGCAGTGCAAATGTTAAGGTGCACCACGGTCCGGACAGTGGGTTCCTCCGTGGGCTCGACAGCCTCAAACGTATACTATCGGAAATATGTGAGGAATACTATTGAAGCGAAGCAACTCGGAGAGACGTGAAG                                                                                                                                                                                                                           ]




>consensus_5416#0
ACGGTGCAAGGATCGATAGGACTGATGATGGGAGCAGCGTTGTAGATATTGGAAGCAATT
TCGAGGAAGGACAGCATGACAACTCTGACGCCGGATATCACGAAGATGAAGAGGTGGACG
ATGACGATGAGGAGGAGGGCGAAGTGGACGATGAGGAGGAACGTCAACTGATGAGACAGA
AACTGCTGGCAGGGAACAGTTCCAAACGATTGCGTGGTAAGGATAGTTGCTGCTCCGCCG
GATCTGTTGGTGCCGTTGGTGCTAACAGCATTATCGCTAGCAGTAGGCCCAGCGACGGCC
CAAGTTTAGTTCCATTGCGCCGGAAACTAAGCTCTAAATCTAAGTCTGGTTCATTGGGAG
GAGTTGCAGGCAGCAGTACGGGTCCGGGTTCCTCAGGAGGAACGTTGGCGGATGTACGAA
TGATTGATTTCGCGCACACGACGTTCGAAATTAAGAACGGCGGTGCATCGTTATGTAGCA
GTGCAAATGTTAAGGTGCACCACGGTCCGGACAGTGGGTTCCTCCGTGGGCTCGACAGCC
TCAAACGTATACTATCGGAAATATGTGAGGAATACTATTGAAGCGAAGCAACTCGGAGAG
ACGTGAAGTGGAAGGCACATAGTGCTGGAATGACTGTGTATAGATAGTGTAGTGAAAGAA
GGCGGTGAGACGCACGAGCTGCGACTCAATGTTATGTACGTGCAATTTGCAATTGAAAAT
CGCCAGGATCGTGCGTCGTCGGTCGCGAATTCCGGACTCACAATAGTGTGATGTTTTAGC
TTACATTTTCGATTTGTTTTACATTTGAATTTCTTAAAGTCCTCAAT

consensusID : consensus_5416#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 743
fasta sequence

                              [CGAATTCAATGGTGATGGTACGTGGCAATTTGGCCAATTGAAATCGCCAGGATCGTGCGTTCGTCGGTTCGCGAATTCCGGACTCTACANATAGTGTGATGTTTTTAGCTTGACATTTGTCGATTTGTGTTTACATTTGAATTTCTTAAAGTCCTCAATGCCCGGGTTCGAGTGTTATTTGCTCCTTCCGATCTATGTTTACGATTCGTTCTTGGGTATTCTTTCATTTAGGTGAAGAATTAAATCTCATTGTCCTTGTTTCACACCTCACAGTGTAGTGCAGGATGAAAAATTAGTTGTTTCGTCGAATTCACCCGAACGACATCGGTTGGTTAGGTTAGGGCTAGGGCGATTTTCATAGTTTCAACCCCAAAGCTCGGACGAAGTGAACAGAACAGAATTTACAACAAGCAATTATAGCTAGAAGGAACGATTGATGACACCGGCAAGCTATACGATAACGTCACGGTTTGACGAACCTACATATTCGTTGCGATTACAGTAGAAAGGAACAAAACAATGGTGATTTTGAAAAGGGATAATTGTGATACTAAAAGCATTTGTCGGTCCCACTCAACAAAGCCATCCCCTTTTTAGTTAACGTTCGTTCCAAAACGCTCAACATCTTTCGTATGTTTTAAATGTTATGTATCGTACGTCTCGTAGGCATAGTCGTGTGTGTATTTAAGTGAAGATAAAGGTGGTTCAAAAATATGAAAAAAATTACAACAAAAGGCAGCATG]

[-] EMBL BX466700             [CGAATTCAATGGTGATGGTACGTGGCAATTTGGCCAATTGAAATCGCCAGGATCGTGCGTTCGTCGGTTCGCGAATTCCGGACTCTACANATAGTGTGATGTTTTTAGCTTGACATTTGTCGATTTGTGTTTACATTTGAATTTCTTAAAGTCCTCAATGCCCGGGTTCGAGTGTTATTTGCTCCTTCCGATCTATGTTTACGATTCGTTCTTGGGTATTCTTTCATTTAGGTGAAGAATTAAATCTCATTGTCCTTGTTTCACACCTCACAGTGTAGTGCAGGATGAAAAATTAGTTGTTTCGTCGAATTCACCCGAACGACATCGGTTGGTTAGGTTAGGGCTAGGGCGATTTTCATAGTTTCAACCCCAAAGCTCGGACGAAGTGAACAGAACAGAATTTACAACAAGCAATTATAGCTAGAAGGAACGATTGATGACACCGGCAAGCTATACGATAACGTCACGGTTTGACGAACCTACATATTCGTTGCGATTACAGTAGAAAGGAACAAAACAATGGTGATTTTGAAAAGGGATAATTGTGATACTAAAAGCATTTGTCGGTCCCACTCAACAAAGCCATCCCCTTTTTAGTTAACGTTCGTTCCAAAACGCTCAACATCTTTCGTATGTTTTAAATGTTATGTATCGTACGTCTCGTAGGCATAGTCGTGTGTGTATTTAAGTGAAGATAAAGGTGGTTCAAAAATATGAAAAAAATTACAACAAAAGGCAGCATG]




>consensus_5416#1
CGAATTCAATGGTGATGGTACGTGGCAATTTGGCCAATTGAAATCGCCAGGATCGTGCGT
TCGTCGGTTCGCGAATTCCGGACTCTACANATAGTGTGATGTTTTTAGCTTGACATTTGT
CGATTTGTGTTTACATTTGAATTTCTTAAAGTCCTCAATGCCCGGGTTCGAGTGTTATTT
GCTCCTTCCGATCTATGTTTACGATTCGTTCTTGGGTATTCTTTCATTTAGGTGAAGAAT
TAAATCTCATTGTCCTTGTTTCACACCTCACAGTGTAGTGCAGGATGAAAAATTAGTTGT
TTCGTCGAATTCACCCGAACGACATCGGTTGGTTAGGTTAGGGCTAGGGCGATTTTCATA
GTTTCAACCCCAAAGCTCGGACGAAGTGAACAGAACAGAATTTACAACAAGCAATTATAG
CTAGAAGGAACGATTGATGACACCGGCAAGCTATACGATAACGTCACGGTTTGACGAACC
TACATATTCGTTGCGATTACAGTAGAAAGGAACAAAACAATGGTGATTTTGAAAAGGGAT
AATTGTGATACTAAAAGCATTTGTCGGTCCCACTCAACAAAGCCATCCCCTTTTTAGTTA
ACGTTCGTTCCAAAACGCTCAACATCTTTCGTATGTTTTAAATGTTATGTATCGTACGTC
TCGTAGGCATAGTCGTGTGTGTATTTAAGTGAAGATAAAGGTGGTTCAAAAATATGAAAA
AAATTACAACAAAAGGCAGCATG

consensusID : consensus_5416#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 702
fasta sequence

                              [GACCCACGCGTCCGATTTAGGTGAAGAATTAAATCTCATTGTCCTTGTTTCACACCTCACAGTGTAGTGCAGGATGAAAAATTAGCTGTTTCGTCGAATTCACCCGAACGAAATCGGTTGGTTAGGTTAGGGCTAGGGCGATTTTCATAGTTTCAGCCCCAAAGCTCGGACGAAGTGAACAGAACAGAATTTACAACAAGCAATTATAGCTAGAAGGAACGATTGATGACACCGGCAAGCTATACGATAACGTCACGGTTTGACGAACCTACATATTCGTTGCGATTACAGTAGAAAGGAACAAAACAATGGTGATTTTGAAAAGGGATAATTGTGATACTAAAAGCATTTGTCGGTCCCACTCAACAAAGCCATCCCCTTTTTAGTTAACGTTCGTTCCAAAACGCTCAACATCTTTCGTATGTTTTAAATGTTATGTATCGTACGTCTCGTAGGCATAGTCGTGTGTGTATTTAAGTGAAGATAAAGGTGGTTCAAAAATATGAAAGTACAATTTTTTTATTTTTTTTTATTTCTCACTTTCCTTACTTTTGTTTACCGCTTTGCATCGCACGCTCGTTTCATTTGCTTTAGATCTGACTTTTTAACTTTTTAAACAATTTACCACGCGATTGGGTTACCAACAATCGAGCCCATGCTTGCTAGCGCATTCAGTTTCATTTTTGTTGTATTAACACTTAT]

[+] EMBL BM642871             [GACCCACGCGTCCGATTTAGGTGAAGAATTAAATCTCATTGTCCTTGTTTCACACCTCACAGTGTAGTGCAGGATGAAAAATTAGCTGTTTCGTCGAATTCACCCGAACGAAATCGGTTGGTTAGGTTAGGGCTAGGGCGATTTTCATAGTTTCAGCCCCAAAGCTCGGACGAAGTGAACAGAACAGAATTTACAACAAGCAATTATAGCTAGAAGGAACGATTGATGACACCGGCAAGCTATACGATAACGTCACGGTTTGACGAACCTACATATTCGTTGCGATTACAGTAGAAAGGAACAAAACAATGGTGATTTTGAAAAGGGATAATTGTGATACTAAAAGCATTTGTCGGTCCCACTCAACAAAGCCATCCCCTTTTTAGTTAACGTTCGTTCCAAAACGCTCAACATCTTTCGTATGTTTTAAATGTTATGTATCGTACGTCTCGTAGGCATAGTCGTGTGTGTATTTAAGTGAAGATAAAGGTGGTTCAAAAATATGAAAGTACAATTTTTTTATTTTTTTTTATTTCTCACTTTCCTTACTTTTGTTTACCGCTTTGCATCGCACGCTCGTTTCATTTGCTTTAGATCTGACTTTTTAACTTTTTAAACAATTTACCACGCGATTGGGTTACCAACAATCGAGCCCATGCTTGCTAGCGCATTCAGTTTCATTTTTGTTGTATTAACACTTAT]




>consensus_5416#2
GACCCACGCGTCCGATTTAGGTGAAGAATTAAATCTCATTGTCCTTGTTTCACACCTCAC
AGTGTAGTGCAGGATGAAAAATTAGCTGTTTCGTCGAATTCACCCGAACGAAATCGGTTG
GTTAGGTTAGGGCTAGGGCGATTTTCATAGTTTCAGCCCCAAAGCTCGGACGAAGTGAAC
AGAACAGAATTTACAACAAGCAATTATAGCTAGAAGGAACGATTGATGACACCGGCAAGC
TATACGATAACGTCACGGTTTGACGAACCTACATATTCGTTGCGATTACAGTAGAAAGGA
ACAAAACAATGGTGATTTTGAAAAGGGATAATTGTGATACTAAAAGCATTTGTCGGTCCC
ACTCAACAAAGCCATCCCCTTTTTAGTTAACGTTCGTTCCAAAACGCTCAACATCTTTCG
TATGTTTTAAATGTTATGTATCGTACGTCTCGTAGGCATAGTCGTGTGTGTATTTAAGTG
AAGATAAAGGTGGTTCAAAAATATGAAAGTACAATTTTTTTATTTTTTTTTATTTCTCAC
TTTCCTTACTTTTGTTTACCGCTTTGCATCGCACGCTCGTTTCATTTGCTTTAGATCTGA
CTTTTTAACTTTTTAAACAATTTACCACGCGATTGGGTTACCAACAATCGAGCCCATGCT
TGCTAGCGCATTCAGTTTCATTTTTGTTGTATTAACACTTAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5416#1      ------------------------------------------------------CGAATT 6
consensus_5416#2      ------------------------------------------------------------
consensus_5416#0      ACGGTGCAAGGATCGATAGGACTGATGATGGGAGCAGCGTTGTAGATATTGGAAGCAATT 60
                                                                                  

consensus_5416#1      CAATGGTGATGGTACGTGGCAATTTGGCCAATTGAAATCGCCAGGATCGTGCGTTCGTCG 66
consensus_5416#2      ------------------------------------------------------------
consensus_5416#0      TCGAGGAAGGACAGCATGACAACTCTGACGCCGGATATCACGAAGATGAAGAGGTGGACG 120
                                                                                  

consensus_5416#1      GTTCGCGAATTCCGGACTCTACANATAGTGTGATGTTTTTAGCTTGACATTTGTCGATTT 126
consensus_5416#2      ------------------------------------------------------------
consensus_5416#0      AT--GACGATGAGGAGGAGGGCGAAGTGGACGATGA----GGAGGAACGTCAACTGATGA 174
                                                                                  

consensus_5416#1      GTGTTTACATTTGAATTTCTTAAAGTCCTCAATGCCCG---GGTTCGAGTGTTATTTGCT 183
consensus_5416#2      ------------------------------------------------------------
consensus_5416#0      GACAGAAACTGCTGGCAGGGAACAGTTCCAAACGATTGCGTGGTAAGGATAGTTGCTGCT 234
                                                                                  

consensus_5416#1      CCTTCCGATCTATGTTTACGATTCGTTCTTG-GGTATTCTTTCATTTAGGTGAAGAATTA 242
consensus_5416#2      -------------------------GACCCA-CGCGTCCG---ATTTAGGTGAAGAATTA 31
consensus_5416#0      CCGCCGGATCTGTTGGTGCCGTTGGTGCTAACAGCATTATCGCTAGCAGTAGGCCCAGCG 294
                                                 *     *  *          **  *    *   

consensus_5416#1      A--ATCTCATTGTCCTTGTTTCACACCTCACAGTGTAGTGCAGGATGAAAAATTAGTTGT 300
consensus_5416#2      A--ATCTCATTGTCCTTGTTTCACACCTCACAGTGTAGTGCAGGATGAAAAATTAGCTGT 89
consensus_5416#0      ACGGCCCAAGTTTAGTTCCATTGCGCCGGAAACTA-AGCTCTAAATCTAAGTCTGGTTCA 353
                      *    *  * * *  **   *  * **  * * *  **  *   **  **   * * *  

consensus_5416#1      TTCGTCGAATTCAC------CCGAACGACATCGG-TTGGTTAGGTTAGGGCTAGGGCGAT 353
consensus_5416#2      TTCGTCGAATTCAC------CCGAACGAAATCGG-TTGGTTAGGTTAGGGCTAGGGCGAT 142
consensus_5416#0      TTGGGAGGAGTTGCAGGCAGCAGTACGGGTCCGGGTTCCTCAGGAGGAACGTTGGCGGAT 413
                      ** *  * * *  *      * * ***    *** **  * ***       * **  ***

consensus_5416#1      TTTCATAGTTTCAACCCCAAAGCTCGGACGAAGTGAACAGAACAGAATTTACAACAAGCA 413
consensus_5416#2      TTTCATAGTTTCAGCCCCAAAGCTCGGACGAAGTGAACAGAACAGAATTTACAACAAGCA 202
consensus_5416#0      GTACGAATGATTGATTTC---GCGCACACGACGTTCG-AAATTAAGAACGGCGGTGCATC 469
                       * *  *   *      *   ** *  **** **    * *  *  *    *        

consensus_5416#1      ATTATA-GCTAGAAGGAACGATTGATGACACCGGCAAGCTATACGATAACGTCAC----- 467
consensus_5416#2      ATTATA-GCTAGAAGGAACGATTGATGACACCGGCAAGCTATACGATAACGTCAC----- 256
consensus_5416#0      GTTATGTAGCAGTGCAAATGTTAAGGTGCACCA-CGGTCCGGACAGTGGGTTCCTCCGTG 528
                       ****     **    ** * *      ****  *   *   **  *    **       

consensus_5416#1      GGTTTGACGAACCTACATATTCGTTGCGATTACAGTAGAAAGGAACAAAACAATGGTGAT 527
consensus_5416#2      GGTTTGACGAACCTACATATTCGTTGCGATTACAGTAGAAAGGAACAAAACAATGGTGAT 316
consensus_5416#0      GGCTCGACAGCCTCAAACGTATACTATCGGAAATAT-GTGAGGAATACTATTGAAGCGAA 587
                      ** * ***   *  * *  *    *      *   * *  ***** *  *     * ** 

consensus_5416#1      TTTGAAAAGGGATAATTGTGATACTAAAAGCATTT---GTCGGTCCCACTCAACAAAGCC 584
consensus_5416#2      TTTGAAAAGGGATAATTGTGATACTAAAAGCATTT---GTCGGTCCCACTCAACAAAGCC 373
consensus_5416#0      GC--AACTCGGAGAGACGTGAAGTGGAAGGCACATAGTGCTGGAATGACTGTGTATAGAT 645
                          **   *** *   ****     ** ***  *   *  **    ***    * **  

consensus_5416#1      ATCCCCTTTTTAGTTAACGTTCGTTCCAAAACGCT-CAAC---ATCTTTCGTATGTTTTA 640
consensus_5416#2      ATCCCCTTTTTAGTTAACGTTCGTTCCAAAACGCT-CAAC---ATCTTTCGTATGTTTTA 429
consensus_5416#0      AGTGTAGTGAAAGAAGGCGGTGAGACGCACGAGCTGCGACTCAATGTTATGTACGTGCAA 705
                      *      *   **    ** *    *  *   *** * **   ** **  *** **   *

consensus_5416#1      AATGTTAT---GTATCGTACGTCTCGTAGGCATAGTCGTGTGTGTATTTAAG--TGAAGA 695
consensus_5416#2      AATGTTAT---GTATCGTACGTCTCGTAGGCATAGTCGTGTGTGTATTTAAG--TGAAGA 484
consensus_5416#0      TTTGCAATTGAAAATCGCCAGGATCGT--GCGTCGTCGGTCGCGAATTCCGGACTCACAA 763
                        **  **     ****   *  ****  ** * ****   * * ***   *  * *  *

consensus_5416#1      TAAAG--GTGGTTCAA---AAATATGAAA--AAAATTACAACAAAAGGCAGCATG----- 743
consensus_5416#2      TAAAG--GTGGTTCAA---AAATATGAAAGTACAATTTTTTTATTTTTTTTTATTTCTCA 539
consensus_5416#0      TAGTGTGATGTTTTAGCTTACATTTTCGATTTGTTTTACATTTGAATTTCTTAAAGTCCT 823
                      **  *   ** ** *    * ** *   *      **               *       

consensus_5416#1      ------------------------------------------------------------
consensus_5416#2      CTTTCCTTACTTTTGTTTACCGCTTTGCATCGCACGCTCGTTTCATTTGCTTTAGATCTG 599
consensus_5416#0      CAAT-------------------------------------------------------- 827
                                                                                  

consensus_5416#1      ------------------------------------------------------------
consensus_5416#2      ACTTTTTAACTTTTTAAACAATTTACCACGCGATTGGGTTACCAACAATCGAGCCCATGC 659
consensus_5416#0      ------------------------------------------------------------
                                                                                  

consensus_5416#1      -------------------------------------------
consensus_5416#2      TTGCTAGCGCATTCAGTTTCATTTTTGTTGTATTAACACTTAT 702
consensus_5416#0      -------------------------------------------