cluster # 5417

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Anopheles gambiae
cluster # 5417 cluster # 5417 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5417#0 length = 893 sequences # 3

consensus_5417#1 length = 674 sequences # 1

consensusID : consensus_5417#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 893
fasta sequence

                              [CCGCGGACGCGTGGGCGGACGCGTGGGCACAAATGTAGGGAAAGATACAGAACTAATAGTAGCGCAGGGGGTGCGTGAGTGCGTGGGGCAGGGGGGTCATATTTATATAAGTGCACGCGCATCGTACCGGCATGTACCGAAATGAAACGAGCTATAGAGACACGTATCTGCCCGA-ACTGGGCTGGTGAGAAATGGAATTGAATGTAAGTTAGTTCTACTTGTTACTACTATACATAGCGTGTGTGCGTGTTATTTTCTGCCATACCACTCGTGACGATGGTTTATTCATCGCTT-CCGGGAAAGGGGAGGAGAGGAGGTGGGTGGGAAATATTGTTGGACCG-TTTTTTTTTTAACAAAAGCTACGACAACAAACAAAGTAAACTGACAAAAGAAATGGGTTTTCAGATCGCGAAAGAGAATATAGATGTATATTTATTGGCCAACCAACCGTCCGGGAAGGTTTGGTGGTTTTGCTGCTTCTGGGTCCCAATTTTTAGTC-TTAGAAGTAACCAAGAAGAA-AAGGTAGATCAAAGCTTAACTATGCAACTATAGTTTGTAAAGCGATAAAGGGACGGACGCGATTCAACCTGTTCGATGGATTATATT-AA-A-TATGTATGTGCCTGTCTCGTGATCATCAGCAGAGAGAACAAAGCGAAACCCCGTAAAGAAAAGAAAAACCAGATAAATTGTA-GAGTAATGTTGCAAAACTCCAAATCATTTCTAAAGGGAACAGGTGGAG-AAAGATATCCTCCCTATGGGCGT-AATGACGGGCGCAGAATAAATTACACCGTTTGCCGCTATTACTGGTGGAAGGATCAATTTTAAAACCATTCAAAGTCGAAAAAGGCGTTACCGTTTTTGCATTAACATAGACGTACGAAGTGTGTGTGTGT]

[+] EMBL BM609814             [CCGCGGACGCGTGGGCGGACGCGTGGGCACAAATGTAGGGAAAGATACAGAACTAATAGTAGCGCAGGGGGTGCGTGAGTGCGTGGGGCAGGGGGGTCATATTTATATAAGTGCACGCGCATCGTACCGGCATGTACCGAAATGAAACGAGCTATAGAGACACGTATCTGCCCGA ACTGGGCTGGTGAGAAATGGAATTGAATGTAAGTTAGTTCTACTTGTTACTACTATACATAGCGTGTGTGCGTGTTATTTTCTGCCATACCACTCGTGACGATGGTTTATTCATCGCTT CCGGGAAAGGGGAGGAGAGGAGGTGGGTGGGAAATATTGTTGGACCG TTTTTTTTTTAACAAAAGCTACGACAACAAACAAAGTAAACTGACAAAAGAAATGGGTTTTCAGATCGCGAAAGAGAATATAGATGTATATTTATTGGCCAACCAACCGTCCGGGAAGGTTTGGTGATTTTGCTGCTTCTGGGTCCCACTTTTTAGTCTTTAGAAGTAACCAAGAAGAA AAGGTAGATCAAAGCTTAACTATGCAACTATAGTTTGTAAAGCGATAAAGGGACGGACGCGATTCAACCTGTTCGATGGATTATATT AA A TATGTATGTGCCTGTCTCGTGATCATCAGCAGAGAGAACAAAGCAAAAC                                                                                                                                                                                                                                              ]
[+] EMBL AL933457             [                                                                                                                                                                cnCGTATCTGCCCGANACTGGGCTGGTGAGAAATGGAATTGAATGT AGTTAGTTCTACTTGTTACTACTATACATAGCGTGTGTGCGTGTTATTTTCTGCCATACCACTCGTGACGATGGTTTATTCATCGCTTCCCGGGAAAGTGGAGGAGAGGAGGTGGGTGGG AATATTGTTGGACCGTTTTTTTTTTTAACAAAAGCCACGACAACAAACAAAGTAAACTGACAAAAGAAATGGGTTTTCAGATCGCAAAAGAGAATATAGATGTATATTTATTGGCCAACCAACCGTCTGGGAAGGTTTGGTGGTTTTGCTGCTTCTGGGTCCCAATTTTTAGTC TTAGAAGTAACCAAGAAGAANAAGGTAGATCAAAGCTTAACTATGCAACTATAGTTTGTAAAGCGATGAAGGGACGGACGCGATTCAACCTGTTCGATGGATTATATTCAACACTATGTATGTGCCTGTCTCGTGATCATCAGCAGAGAGAACAAAGCGAAACCCCGTAAAGAAAAGAAAAACCAGATAAATTGTACGAGTAATGTTGCAAAACTCCAAATCATTTCTAAAGGGAACAGGTGGAGAAAAGATATCCTCCCTATGGGCGT AATGACGG                                                                                                                           ]
[+] EMBL BM620950             [                                                                                                                                                                                                                                                                                                                                                                                                          AAATGGGTTTTCAGATCGCGAAAGAGAATATAGATGTATATTTATTGGCCAACCAACCGTCCGGGAAGGTTTGGTGGTTTTGCTGCTTCTGGATCCCAATTTTTAGTC TTAGAAGTAACCACGAAGAA AAGGTAGATCAAAGCTTAACTATGCAACTATAGTTTGTAAAGCGGTAAAGGGACAGAAGCGATTCAACCTGTTCGATGGATTATATT AA A TATGTATGTGCCTGTCTCGTGATCATCAGCAGAGAGAACAAAGCGAAACCCCGTAAAGAAAAGAAAAACCAGATAAATTGTA GAATAATGTTGCAGAACTCCAAATCATTTATAAAGGGAACAGGTGGAG AAAGATATCCTCCCTACGGGCGTAAATGGC AGCGCAGAATAAATTACACCGTTTGCCGCTATTACTGGTGGAAGGATCAATTTTAAAACCATTCAAAGTCGAAAAAGGCGTTACCGTTTTTGCATTAACATAGACGTACGAAGTGTGTGTGTGT]




>consensus_5417#0
CCGCGGACGCGTGGGCGGACGCGTGGGCACAAATGTAGGGAAAGATACAGAACTAATAGT
AGCGCAGGGGGTGCGTGAGTGCGTGGGGCAGGGGGGTCATATTTATATAAGTGCACGCGC
ATCGTACCGGCATGTACCGAAATGAAACGAGCTATAGAGACACGTATCTGCCCGAACTGG
GCTGGTGAGAAATGGAATTGAATGTAAGTTAGTTCTACTTGTTACTACTATACATAGCGT
GTGTGCGTGTTATTTTCTGCCATACCACTCGTGACGATGGTTTATTCATCGCTTCCGGGA
AAGGGGAGGAGAGGAGGTGGGTGGGAAATATTGTTGGACCGTTTTTTTTTTAACAAAAGC
TACGACAACAAACAAAGTAAACTGACAAAAGAAATGGGTTTTCAGATCGCGAAAGAGAAT
ATAGATGTATATTTATTGGCCAACCAACCGTCCGGGAAGGTTTGGTGGTTTTGCTGCTTC
TGGGTCCCAATTTTTAGTCTTAGAAGTAACCAAGAAGAAAAGGTAGATCAAAGCTTAACT
ATGCAACTATAGTTTGTAAAGCGATAAAGGGACGGACGCGATTCAACCTGTTCGATGGAT
TATATTAAATATGTATGTGCCTGTCTCGTGATCATCAGCAGAGAGAACAAAGCGAAACCC
CGTAAAGAAAAGAAAAACCAGATAAATTGTAGAGTAATGTTGCAAAACTCCAAATCATTT
CTAAAGGGAACAGGTGGAGAAAGATATCCTCCCTATGGGCGTAATGACGGGCGCAGAATA
AATTACACCGTTTGCCGCTATTACTGGTGGAAGGATCAATTTTAAAACCATTCAAAGTCG
AAAAAGGCGTTACCGTTTTTGCATTAACATAGACGTACGAAGTGTGTGTGTGT

consensusID : consensus_5417#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 674
fasta sequence

                              [CCGCCCACGCGTCCGGATAAATTGTAGAGTAATGTTGCAAAACTCCAAATCATTTCTAAAGGGAACAGGTGGAGAAAGATATCCTCCCTATGGGCGTAAATGACGGCGCAGAATAAATTACACCGTTTGCCGCAAATACTGGGGGAAGGATCAATTTTAAAACCATTCAAAATCGAAAAAGGCGTTACCGTTTTTGCATTAACATAGACGTACGATGTGTGTGTGTGTGCGTGTGTGCGATGATCTCGGCTTACAAATCAAACAGACCGCACGCGCATGCCAAGGGAGGGAAGGGAAGTATTTCGTTTTAACGAACGTCGCATTCTGGGTCGTCCGCATCCTGCGCCCTGCCCTGGAGCACGCGCACCGGAATCGATACCATCTAGTCGCGAATGTCAACCAAATACGAATGATTAAAACAACTGAGCTGCTGGTACACGCTTGCGCTGAGTCATAGGTGTGTAAGTGTAATTTACCAAAAATAAATCTGAAATGGTTTAACCTCTGGCTTAAGAAAAACGTATAACATGGGCAGAGTGGGGACTTTAGTTTGGTGGTAAAATATTTACGAATTCAAAGGGACAACAACGGCCGTTTCATGTCCGAAGTGGTAGGGGAGAAGACATGCACTGGGGCAATTTTTGTTTTGCAATTAACCGGCGAGTGCACGGAGC]

[+] EMBL BM654762             [CCGCCCACGCGTCCGGATAAATTGTAGAGTAATGTTGCAAAACTCCAAATCATTTCTAAAGGGAACAGGTGGAGAAAGATATCCTCCCTATGGGCGTAAATGACGGCGCAGAATAAATTACACCGTTTGCCGCAAATACTGGGGGAAGGATCAATTTTAAAACCATTCAAAATCGAAAAAGGCGTTACCGTTTTTGCATTAACATAGACGTACGATGTGTGTGTGTGTGCGTGTGTGCGATGATCTCGGCTTACAAATCAAACAGACCGCACGCGCATGCCAAGGGAGGGAAGGGAAGTATTTCGTTTTAACGAACGTCGCATTCTGGGTCGTCCGCATCCTGCGCCCTGCCCTGGAGCACGCGCACCGGAATCGATACCATCTAGTCGCGAATGTCAACCAAATACGAATGATTAAAACAACTGAGCTGCTGGTACACGCTTGCGCTGAGTCATAGGTGTGTAAGTGTAATTTACCAAAAATAAATCTGAAATGGTTTAACCTCTGGCTTAAGAAAAACGTATAACATGGGCAGAGTGGGGACTTTAGTTTGGTGGTAAAATATTTACGAATTCAAAGGGACAACAACGGCCGTTTCATGTCCGAAGTGGTAGGGGAGAAGACATGCACTGGGGCAATTTTTGTTTTGCAATTAACCGGCGAGTGCACGGAGC]




>consensus_5417#1
CCGCCCACGCGTCCGGATAAATTGTAGAGTAATGTTGCAAAACTCCAAATCATTTCTAAA
GGGAACAGGTGGAGAAAGATATCCTCCCTATGGGCGTAAATGACGGCGCAGAATAAATTA
CACCGTTTGCCGCAAATACTGGGGGAAGGATCAATTTTAAAACCATTCAAAATCGAAAAA
GGCGTTACCGTTTTTGCATTAACATAGACGTACGATGTGTGTGTGTGTGCGTGTGTGCGA
TGATCTCGGCTTACAAATCAAACAGACCGCACGCGCATGCCAAGGGAGGGAAGGGAAGTA
TTTCGTTTTAACGAACGTCGCATTCTGGGTCGTCCGCATCCTGCGCCCTGCCCTGGAGCA
CGCGCACCGGAATCGATACCATCTAGTCGCGAATGTCAACCAAATACGAATGATTAAAAC
AACTGAGCTGCTGGTACACGCTTGCGCTGAGTCATAGGTGTGTAAGTGTAATTTACCAAA
AATAAATCTGAAATGGTTTAACCTCTGGCTTAAGAAAAACGTATAACATGGGCAGAGTGG
GGACTTTAGTTTGGTGGTAAAATATTTACGAATTCAAAGGGACAACAACGGCCGTTTCAT
GTCCGAAGTGGTAGGGGAGAAGACATGCACTGGGGCAATTTTTGTTTTGCAATTAACCGG
CGAGTGCACGGAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5417#0      CCGCGGACGCGTGGGCGGACGCGTGGGCACAAAT-GTAGGGAAA-GATACAGAACTAATA 58
consensus_5417#1      ------------CCGCCCACGCGTCCGGATAAATTGTAGAGTAATGTTGCAAAACTCCAA 48
                                    **  ******  * * **** **** * ** * * ** ****   *

consensus_5417#0      GTAGCGCAGGGGGTGCGTGAGTGCGTGGGGCAGGGGGGTCATATTTATATAAGTGCACGC 118
consensus_5417#1      ATCATTTCTAAAGGGAACAGGTG-GAGAAAGATATCCTCCCTATGGGCGTAAATGACGGC 107
                       *          * *     *** * *    *       * ***     *** **   **

consensus_5417#0      GCATCGTAC----CGGCATGTACCGAAATGAAACGAGCTATAGAGACACGTATCTGCCCG 174
consensus_5417#1      GCAGAATAAATTACACCGTTTGCCGCAA--ATACTGGGGGAAGGATCA-ATTTTAAAACC 164
                      ***   **     *  * * * *** **  * **  *    **   **  * *     * 

consensus_5417#0      AACTGGGCTGGTGAGAAATGGAATTGAATGTAAGTTAGT-TCTACTTGTTACTACTATAC 233
consensus_5417#1      ATTCAAAATCGAAAAAGGCGTTACCGTTTTTGCATTAACATAGACGTACGATGTGTGTGT 224
                      *       * *  * *   *  *  *  * *   ***   *  ** *   *    * *  

consensus_5417#0      ATAGCGTGTGTGCGTGTTATTTTCTGCCATACCACTCGTGACGATGGTTTATTCATCGCT 293
consensus_5417#1      GT-GTGCGTGTGTGCGATGATCTCGGCT-TACAAATCAAACAGACCGCACGCGCA----T 278
                       * * * ***** * * *  * ** **  *** * **     **  *      **    *

consensus_5417#0      TCCGGGAAAGGGGAGGAGAGGAGGTGGGTGGGAAATATTGTTGGACCGTTTTTTTTTTAA 353
consensus_5417#1      GCCAAGGGAGGGAAGGGAAGTATTTCGTTTT-AACGAACGTCG---CATTCTGGGTCGTC 334
                       **  *  **** ***  ** *  * * *   **  *  ** *   * ** *   *    

consensus_5417#0      CAAAAGCTACGACAACAAACAAAGTAAACTGACAAAAGAAATGG-GTTTTCAGATCGCGA 412
consensus_5417#1      CGCATCCTGCGCC--CTGCCCTGGAGCACGCGCACCGGAATCGATACCATCTAGTCGCGA 392
                      *  *  ** ** *  *   *   *   **   **   ***  *      **   ******

consensus_5417#0      AAGAGAATATAGATGTATATTTATTGGCCAACCAACCGTCCGGGAAGGTTTGGTGGTTTT 472
consensus_5417#1      ATGTCAAC-CAAATACGAATGATTAAAACAACTGAGCTGCTGGTACA------CGCTTGC 445
                      * *  **   * **    **   *    ****  * *  * ** *         * **  

consensus_5417#0      GCTGCTTC-TGGGTCCCAATTTTTAGTCTTAGAAGTAACCAAGAAGAAAAGGTAGATCAA 531
consensus_5417#1      GCTGAGTCATAGGTGTGTAAGTGTAAT-TTACCAAAAATAAATCTGAAATGGT---TTAA 501
                      ****  ** * ***    *  * ** * ***  *  **  **   **** ***   * **

consensus_5417#0      AGCTTAACTATGCAACTATAGTTTGTAAAGCGATAAAGGGACGGACGCGATTCAACCTGT 591
consensus_5417#1      CCTCTGGCT---TAAGAAAAACGTATAACATGGGCAGAGTGGGGAC----TTTA----GT 550
                          *  **    **  * *   * ***   *   *  *   ****    ** *    **

consensus_5417#0      TCGATGGATTATATTAAATATGTATGTGCCTGTCTCGTGATCATCAGCAGAGAGAACAAA 651
consensus_5417#1      TTGGTGG------TAAAATATTTACGAAT---TCAAAGGGACAACAACGGCCGTTTCATG 601
                      * * ***      * ****** ** *      **    *  ** ** * *      **  

consensus_5417#0      GCGAAACCCCGTAAAGAAAAGAAAAACCAGATAAATTGTAGAGTAATGTTGCAAAACTCC 711
consensus_5417#1      -------TCCGAAGTGGTAGGGGAGA--AGACATGCACTGGGGCAATTTT---TGTTTTG 649
                              *** *  *  * *  * *  *** *     * * * *** **       *  

consensus_5417#0      AAATCATTTCTAAAGGGAACAGGTGGAGAAAGATATCCTCCCTATGGGCGTAATGACGGG 771
consensus_5417#1      CAATTAACCGGCGAGTGCACGGAGC----------------------------------- 674
                       *** *       ** * ** *                                      

consensus_5417#0      CGCAGAATAAATTACACCGTTTGCCGCTATTACTGGTGGAAGGATCAATTTTAAAACCAT 831
consensus_5417#1      ------------------------------------------------------------
                                                                                  

consensus_5417#0      TCAAAGTCGAAAAAGGCGTTACCGTTTTTGCATTAACATAGACGTACGAAGTGTGTGTGT 891
consensus_5417#1      ------------------------------------------------------------
                                                                                  

consensus_5417#0      GT 893
consensus_5417#1      --