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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5425#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1064 fasta sequence
[CCGCGGACGCGTGGGCGGACGCGTGGGCGCGAAGATTAAAACGCTGCCGCATCCCGTCCTTCTGTGGGAACGATGTCATACGAGAGATTGCCTACTGCTACACCGAGGGCAGCTTCTGCGAGGAGTGGATCGGCAATCAGCTGTACCAGAACAGCCGCAACATCATTCTGCCCCCACCGGCGGCACCACCTTCGACCACGACCACGACCACCACAACGACGACCACAACCACGACGACTACGCCTCGGCCCAGCCGACCGCGAAGGCCACATCCGAATGGGTTGAGTCGAAGCGATACGGTCTCGGTGCCATCCACCCTGTCGGCCCAGATATTCTCCAACCGGCGGGGTCTGCTGCAGCCCGAGTACCTGCCCCAGCCGCTGACCTGCGGTTTGCCGATGGTGCGTGACAAGCCAAAGAAGAACTATCTCTACAATATGCTGCGTATAATCGGTGGAAAAACGAGCCGCCGGGGACAGTGGCCCTGGCAGGTGGCCATACTTAATCGGTTTAAGGAGGCTTTCTGCGGCGGAACGTTGGTCTCTTCGCGCTGGATTCTAACGGCTGCGCATTGCGTGCGCAAACGGCTGTTCGTGCGGCTCGGTGAGCACAATCTGCAGCAATCGGACGGCACGGAGATTGAGTTCCGCGTCGAGCTGAGCATTAAGCATCCACGGTACGATAAGAAAACGGTCGACAACGATGTGGCACTGCTGAAGCTGCCGCGGGAAGTGGAACGGTCCAACTTTATCGGTTACTCCTGTCTGCCGGAGCGATATCAGGCCCTGCCGACCGGGCACACCTGCACCATCATTGGGTGGGGCAAGAAGCGCCATAACGACGACGCCGGGACGGACATACTGCACGAGGCGGAGGTACCGATCGTACCGAACGAACGGTGCCGGGCGGTGTATCACGACTATACGATCACGAAGAATATGTTCTGCGCCGGGCACAAGCGGGGCCGGATCGATACTTGCGCGGGCGATTCCGGGGGGCCGTTGCTGTGCCGCGATGCGACCAAGCTGAACAGCCCGTGGACGATCTATGGTATTACGAGCTTC]
[+] EMBL BM611043 [CCGCGGACGCGTGGGCGGACGCGTGGGCGCGAAGATTAAAACGCTGCCGCATCCCGTCCTTCTGTGGGAACGATGTCATACGAGAGATTGCCTACTGCTACACCGAGGGCAGCTTCTGCGAGGAGTGGATCGGCAATCAGCTGTACCAGAACAGCCGCAACATCATTCTGCCCCCACCGGCGGCACCACCTTCGACCACGACCACGACCACCACAACGACGACCACAACCACGACGACTACGCCTCGGCCCAGCCGACCGCGAAGGCCACATCCGAATGGGTTGAGTCGAAGCGATACGGTCTCGGTGCCATCCACCCTGTCGGCCCAGATATTCTCCAACCGGCGGGGTCTGCTGCAGCCCGAGTACCTGCCCCAGCCGCTGACCTGCGGTTTGCCGATGGTGCGTGACAAGCCAAAGAAGAACTATCTCTACAATATGCTGCGTATAATCGGTGGAAAAACGAGCCGCCGGGGACAGTGGCCCTGGCAGGTGGCCATACTTAATCGGTTTAAGGAGGCTTTCTGCGGCGGAACGTTGGTCTCTTCGCGCTGGATTCTAACGGCTGCGCATTGCGTGCGCAAACGGCTGTTCGTGCGGCTCGGTGAGCACAATCTGCAGCAA ]
[+] EMBL BX618558 [ ACGACGACCACAACCACGACGACTACGCCTCGGCCCAGCCGACCGCGAAGGCCACATCCGAATGGGTTGAGTCGAAGCGATACGGTCTCGGTGCCATCCACCCTGTCGGCCCAGATATTCTCCAACCGGCGGGGTCTGCTGCAGCCCGAGTACCTGCCCCAGCCGCTGACCTGCGGTTTGCCGATGGTGCGTG ]
[+] EMBL BX622592 [ CCAGCCGACCGCGAAGGCCACATCCGAATGGGTTGAGCCGAAGCGATACGGTCCCGGTGCCATCCACCCTGTCGGCCCAGATATTCTCCAACCGGCGGGGTCTGCTGCAGCCCGAGTACCTGCCCCAGCCGCTGACCTGCGGTTTGCCGATGGTGCGTGACAAGCCAAAGAAGAACTATCTCTACAACATGCTGCGTATAATCGGTGGAAAAACGAGCCGCCGGGGACAGTGGCCCTGGCAGGTGGCCATACTTAATCGGTTTAAGGAGGCTTTCTGCGGCGGAACGTTGGTCTCTTCGCGCTGGATTCTAACGGCTGCGCATTGCGTGCGCAAACGGCTGTTCGTGCGGCTCGGTGAGCACAATCTGCAGCAATCGGACGGCACGGAGATTGAGTTCCGCGTCGAGCTGAGCATTAAGCATCCACGGTACGATAAGAAAACGGTCGACAACGATGTGGCACTGCTGAAGCTGCCGCGGGAAGTGGAACGGTCCAACTTTATCGGTTACTCCTGTCTGCCGGAGCGATATCAGGCCCTGCCGACCGGGCACACCTGCACCATCATTGGGTGGGGCAAGAAGCGCCATAACGACGACGCCGGGACGGACATACTGCACGAGGCGGAGGTACCGATCGTACCGAACGAACGGTGCCGGGCGGTGTATCACGACTATACGATCACGAAGAATATGTTCTGCGCCGGGCACAAGCGGGGCCGGATCGATACTTGCGCGGGCGATTCCGGGGGGCCGTTGCTGTGCCGCGATGCGACCAAGCTGAACAGCCCGTGGACGATCTATGGTATTACGAGCTTC]
consensusID : consensus_5425#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 588 fasta sequence
[CTGTATCGAGATGGAACGGCATTCTCGAACCGCAAAGGGGAGGAGTATCCCGAATCGGACGACCAGGAAGATTGGCGTCCGATTGTCCCACTGTCGAACAGCAGCAAACACGCTGGATTCGCAGCCGATGTATGATGCACAGGCACTGAAGAGAGATGCCTTTCCACACACGACGGAGAAGCTGGCAAATGATTCCAGCAGTACGCAGCGCTATCAACAAGCAGCTGCTGGAGTCCTTCTCCACGGCGACTACGTGNGCGTGGTAGGAGGCTCGAACAGGCGTAAGCGTGAAGTGGATGACGATTCAACGCGAGTACGAGCAGTTCAGTCCAGTGACGCTACGGATGACGGAGCAGTGCCGGGAGGATGCTAAAGTCCGGCCCGGCATTGACACACGCGGCGAACACGCGAGAAAGCAGTCTTCGAGATGCCGCGGAAGGTGGAGAACCCCATATGACAAAGTGGAGCAAGCTGGACCAAGTGTACGGCCAAGTGTACAACGCGAAGATTAAAACGCTGCCGCATCCCGTCCTCTCTGTGCGGAACGCATGTCATACGAGCAGATTGCCTACTGCTACACCGAGGGCA]
[+] EMBL AL933554 [CTGTATCGAGATGGAACGGCATTCTCGAACCGCAAAGGGGAGGAGTATCCCGAATCGGACGACCAGGAAGATTGGCGTCCGATTGTCCCACTGTCGAACAGCAGCAAACACGCTGGATTCGCAGCCGATGTATGATGCACAGGCACTGAAGAGAGATGCCTTTCCACACACGACGGAGAAGCTGGCAAATGATTCCAGCAGTACGCAGCGCTATCAACAAGCAGCTGCTGGAGTCCTTCTCCACGGCGACTACGTGNGCGTGGTAGGAGGCTCGAACAGGCGTAAGCGTGAAGTGGATGACGATTCAACGCGAGTACGAGCAGTTCAGTCCAGTGACGCTACGGATGACGGAGCAGTGCCGGGAGGATGCTAAAGTCCGGCCCGGCATTGACACACGCGGCGAACACGCGAGAAAGCAGTCTTCGAGATGCCGCGGAAGGTGGAGAACCCCATATGACAAAGTGGAGCAAGCTGGACCAAGTGTACGGCCAAGTGTACAACGCGAAGATTAAAACGCTGCCGCATCCCGTCCTCTCTGTGCGGAACGCATGTCATACGAGCAGATTGCCTACTGCTACACCGAGGGCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5425#0 CCGCGGACGCGTGGGCGGACGCGTGGGCGCGAAGATTAAAACGCTGCCGCATCCCGTCCT 60
consensus_5425#1 ------------------------------------------------------------
consensus_5425#0 TCTGTGGGAACGATGTCATACGAGAGATTGCCTACTGCTACACCGAGGGCAGCTTCTGCG 120
consensus_5425#1 ------------------------------------------------------------
consensus_5425#0 AGGAGTGGATCGGCAATCAGCTGTACCAGAACAGCCGCAACATCATTCTGCCCCCACCGG 180
consensus_5425#1 ------------------------------------------------------------
consensus_5425#0 CGGCACCACCTTCGACCACGACCACGACCACCACAACGACGACCACAACCACGACGACTA 240
consensus_5425#1 ------------------------------------------------------------
consensus_5425#0 CGCCTCGGCCCAGCCGACCGCGAAGGCCACATCCGAATGGGTTGAGTCGAAGCGATACGG 300
consensus_5425#1 ------------------------------------------------------------
consensus_5425#0 TCTCGGTGCCATCCACCCTGTCGGCCCAGATATTCTCCAACCGGCGGGGTCTGCTGCAGC 360
consensus_5425#1 ------------------------------------------------------------
consensus_5425#0 CCGAGTACCTGCCCCAGCCGCTGACCTGCGGTTTGCCGATGGTGCGTGACAAGCCAAAGA 420
consensus_5425#1 ------------------------------------------------CTGTATCGAGAT 12
* *
consensus_5425#0 AGAACTATCTCTACAATATGCTGCGTATAATCG-GTGGAAAAACGAGCCGCCGGGGACAG 479
consensus_5425#1 GGAACGGCATTCTCGAACCGCAAAGGGGAGGAGTATCCCGAATCGGACGACCAGGAAGAT 72
**** * * * ** * * * * ** ** * ** ** * *
consensus_5425#0 TGGCCCTGGCAGGTGGCCATACTTAATCGGTTTAAGGAGGCTT--TCTGCGGCGGAACGT 537
consensus_5425#1 TGGCGTCCGATTGTCCCACTGTCGAACAGCAGCAAACACGCTGGATTCGCAGCCGATGTA 132
**** * ** * * ** * ** * *** * ** ** **
consensus_5425#0 TGGTCTCTTCGCGCTGGATTCTAACGGCTGCGCATTGCGTGCGCAAACGGCTGTTCGTGC 597
consensus_5425#1 TGATGCACAGGCACTGAAGAGAGATGCCTTTCCAC-ACACGACGGAGAAGCTGG-CAAAT 190
** * ** *** * * * ** ** * * * **** *
consensus_5425#0 GGCTCGGTGAGCACAATCTGCAGCAATCGGACGGCACGGAGATTGAGTTCCGCGTCGAGC 657
consensus_5425#1 GATTCCAGCAGTACGCAGCGCTATCAACAAGCAGCT----GCTGGAGTCCTTCTCCACGG 246
* ** ** ** ** * * * ** * * **** * * * *
consensus_5425#0 TGAGCATTAAGCATCCACGGTACGATAAGAAAACGGTCGACAACGATGTGGCACTGCTGA 717
consensus_5425#1 CGA---CTACGTGNGCGTGGTAGGAGGCTCGAACAGGCGTAAGCG---TGAAGTGGATGA 300
** ** * * **** ** *** * ** * ** ** * ***
consensus_5425#0 AGCTGCCGCGGGAAGTGGAACGGTCCAACTTTATCGGTTACTCCTGTCTGCCGGAGCGAT 777
consensus_5425#1 CGATTCAACGCGAGTACGAGCAGTTCAGTCCAGT--GACGCTACGGA-TGACGGAGCAGT 357
* * * ** ** ** * ** ** * * ** * * ** ****** *
consensus_5425#0 ATCAGGCCCTGCCGACCGGGCACACCTGCACCATCATTGGGTGGGGCAAGAAGCGCCATA 837
consensus_5425#1 GCCGGG------AGGATGCTAAAGTCCGGCCCGGCATTGACACACGCGGCGAACAC---- 407
* ** * * * * * ** ***** ** * * *
consensus_5425#0 ACGACGACGCCGGGACGGACATACTGCACGAGGCGGAGGTACCGATCGTACCGAACGAAC 897
consensus_5425#1 GCGAGAAAGCAGTCTTCGAGATGCCGCGGAAGGTGGAGAACCCCATATGACAAAGTGGAG 467
*** * ** * ** ** * ** *** **** ** ** ** * * *
consensus_5425#0 GGTGCCGGGC--GGTGTATCAC-GACTATACGATCACGAAGAATATG----TTCTGCGCC 950
consensus_5425#1 CAAGCTGGACCAAGTGTACGGCCAAGTGTACAA-CGCGAAGATTAAAACGCTGCCGCATC 526
** ** * ***** * * * *** * * ****** ** * * ** *
consensus_5425#0 GGGCACAAGCGGGGCCGGATCGATACTTGCGCGGGCGATTCCGGGGGGCCGTTGCTGTGC 1010
consensus_5425#1 CCGTCCTCTCTGTGCGGAACGCATG-TCATACGAGCAGATT-----GCCTACTGCTACAC 580
* * * * ** * * ** * ** ** * * * **** *
consensus_5425#0 CGCGATGCGACCAAGCTGAACAGCCCGTGGACGATCTATGGTATTACGAGCTTC 1064
consensus_5425#1 CGAGG-GCA--------------------------------------------- 588
** * **
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||