These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5428#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 651 fasta sequence [CCGGGGGAGACGATTCGATCCATAATGGTCCCATGAGTGGCGGACCGGCGGGGTGCGAAAACGAAGAAAACGAAGAAGAAGAGGAAGGAAACAATAAGAAATGACCTGAACATATTTTCCATATTATATGAAAGTAACTGTTTTTTGTCTGTTTTGATTCTTTTTTATACTTATATATACACCCACAAATACTACGACAAAACTGAACTGATAATTATGAGACGGGGTGGCGAACTATTGTACGATCGAGGCAGGCAAGCCAGCAGGAGAGGTTGGAGTTACA-----AA-AAGAAGAAGCAGAACACGAAAAGTGGTGAACCATTTGTTGTAGAAGAGACAATTTCCATTAGCGTACGCGCGCACGCTGTAACAACATT-TTCCGTATTTACACCGGTGTGTACTATTTTGTATGTG---TTTTTTTCTGCTTTCCGTTCAAAGTTTTCACTACATCCAAAACGGTGCAACAATTT-CTGG-AAGGTGAAAGAGTTCCCGAAGTGGGGAATATACACAAACACTCAAAAAAACAACACTTACATACACACCTATATACATAATGGCACGTGAAAATGGGATTATTCCGCTGCGGACAAATGAGTGTGTGAATGTGTGTGAGTGGATATATCTCTGTCGTCGCAAGTTGTCATCACGATTCGA] [+] EMBL BM577716 [CCGGGGGAGACGATTCGATCCATAATGGTCCCATGAGTGGCGGACCGGCGGGGTGCGAAAACGAAGAAAACGAAGAAGAAGAGGAAGGAAACAATAAGAAATGACCTGAACATATTTTCCATATTATATGAAAGTAACTGTTTTTTGTCTGTTTTGATTCTTTTTTATACTTATATATACACCCACAAATACTACGACAAAACTGAACTGATAATTATGAGACGGGGTGGCGAACTATTGTACGATCGAGGCAGGCAAGCCAGCAGGAGAGGTTGGAGTTACA AA AAGAAGAAGCAGAACACGAAAAGTGGTGAACCATTTGTTGTAGAAGAGACAATTTCCATTAGCGTACGCGCGCACGCTGTAACAACATT TTCCGTATTTACACCGtag ] [+] EMBL AL933728 [ cgagtnCGGC GGGTGCGAAAACGAAGAAAACGAAGAA AAGAGGAAGGAAACAATAAGAAATGACCTGAACATATTTTCCATATTATATGAAAGTAACTGTTTTTTGTCTGTTTTGATTCTTTTTTATACTTATATATACACCCACAAATACTACGACAAAACTGAACTGATAATTATGAGACGGGGTGGCGAACTATTGTACGATCGAGGCAGGCAAGCCAGCAGGAGAGGTTGGAGTTACA AA AAGAAGAAGCAGAACACGAAAAGTGGTGAACCATTTGTTGTA AAGAGACAATTTCCATTAGCGTACGCGCGCACGCTGTAACAACATTATTCCGTATTTACACCGGTGTGTACTATTTTGTATGTG TTTTTTTCTGCTTTCCGTTCAAAGTTTTCACTACATCCAAAACGGTGCAACAATTT CTGG AAGGTGAAAGAGTTCCCGAAGTGGGGAATATACACAAACACTCAAAAAAACAACACTTACATACACACCTATATACATAATGGCACGTGAAAATGGGATTAT ] [+] EMBL BM586321 [ TGTCTGTTTTGATTCTTTTTTATACTTATATATACACCCACAAATACTACGACAAAACTGAACTGATAATTATGAGAGGGGGAGGCGAACTATTGTACGATCGAGGCAAGCAAGCCAGCAGGAGAGGTTGGGGTTACAAGAAGAAGAAGAAGAAGCAGAACACGAAAAGTGGTGAACCATTTGTTGTAGAAGAGACAATTTCCATTAGCGTACGCGCGCACGCTGTACCAACATT TTCCGTATTTACACC GTGTTTACTATTTTGTATGTGTTTTTTTTTTCTGCTTTCCGTTTAAACTTTTCACTACATCCAAAACGGTGCAACAATTTACTGGAAAGGTGAAAGAGTTCCCGAAATAAGGAATATACACAAACACTAAAAAAAACAACACTTACATACACACCTATATACATAATGGCACGTGAAAATGGGATTATTCCGCTGCGGACAAATGAGTGTGTGAATGTGTGTGAGTGGATATATCTCTGTCGTCGCAAGTTGTCATCACGATTCGA] consensusID : consensus_5428#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 366 fasta sequence [CCGCCCACGCGTCCGCCATGAGTGGCGGACCGGCGGGGTACGAAAACGAAGAAAACGAAGAAGAAGAAGAGGAAGGAAACAATAAGAAATGACCTGAACATATTTTCCATATTATATGAAAGTAACTGTTTTTTGTCTGTTTTGATTCTTTTTTATACTTATATATACACCCACAAATACTACGACAAAACTGAACTGATAATTATGAGGCGGGGAGGCGAACTATTGTACGATCGAGGCAGGCAAGTCAGCAGGAGAAGTTGGAGTTACAAGAAGAAGAAGAAGCAAAAGAAGCAGAAGAAGCAGAACACGAAAAGTGGTGAACCATTTGTTGTAGAAGAGACAATTTCCATTAGCGTACGCGCG] [+] EMBL BM630787 [CCGCCCACGCGTCCGCCATGAGTGGCGGACCGGCGGGGTACGAAAACGAAGAAAACGAAGAAGAAGAAGAGGAAGGAAACAATAAGAAATGACCTGAACATATTTTCCATATTATATGAAAGTAACTGTTTTTTGTCTGTTTTGATTCTTTTTTATACTTATATATACACCCACAAATACTACGACAAAACTGAACTGATAATTATGAGGCGGGGAGGCGAACTATTGTACGATCGAGGCAGGCAAGTCAGCAGGAGAAGTTGGAGTTACAAGAAGAAGAAGAAGCAAAAGAAGCAGAAGAAGCAGAACACGAAAAGTGGTGAACCATTTGTTGTAGAAGAGACAATTTCCATTAGCGTACGCGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5428#0 CCGGGGGAGACGATTCGATCCATAATGGTCCCATGAGTGGCGGACCGGCGGGGTGCGAAA 60 consensus_5428#1 ---------------CCGCCCACGCGTCCGCCATGAGTGGCGGACCGGCGGGGTACGAAA 45 * *** ************************ ***** consensus_5428#0 ACGAAGAAAACGAAGAAGAAGA---GGAAGGAAACAATAAGAAATGACCTGAACATATTT 117 consensus_5428#1 ACGAAGAAAACGAAGAAGAAGAAGAGGAAGGAAACAATAAGAAATGACCTGAACATATTT 105 ********************** *********************************** consensus_5428#0 TCCATATTATATGAAAGTAACTGTTTTTTGTCTGTTTTGATTCTTTTTTATACTTATATA 177 consensus_5428#1 TCCATATTATATGAAAGTAACTGTTTTTTGTCTGTTTTGATTCTTTTTTATACTTATATA 165 ************************************************************ consensus_5428#0 TACACCCACAAATACTACGACAAAACTGAACTGATAATTATGAGACGGGGTGGCGAACTA 237 consensus_5428#1 TACACCCACAAATACTACGACAAAACTGAACTGATAATTATGAGGCGGGGAGGCGAACTA 225 ******************************************** ***** ********* consensus_5428#0 TTGTACGATCGAGGCAGGCAAGCCAGCAGGAGAGGTTGGAGTTACAAAAAGAAGAAG--- 294 consensus_5428#1 TTGTACGATCGAGGCAGGCAAGTCAGCAGGAGAAGTTGGAGTTACAAGAAGAAGAAGAAG 285 ********************** ********** ************* ********* consensus_5428#0 ------------------CAGAACACGAAAAGTGGTGAACCATTTGTTGTAGAAGAGACA 336 consensus_5428#1 CAAAAGAAGCAGAAGAAGCAGAACACGAAAAGTGGTGAACCATTTGTTGTAGAAGAGACA 345 ****************************************** consensus_5428#0 ATTTCCATTAGCGTACGCGCGCACGCTGTAACAACATTTTCCGTATTTACACCGGTGTGT 396 consensus_5428#1 ATTTCCATTAGCGTACGCGCG--------------------------------------- 366 ********************* consensus_5428#0 ACTATTTTGTATGTGTTTTTTTCTGCTTTCCGTTCAAAGTTTTCACTACATCCAAAACGG 456 consensus_5428#1 ------------------------------------------------------------ consensus_5428#0 TGCAACAATTTCTGGAAGGTGAAAGAGTTCCCGAAGTGGGGAATATACACAAACACTCAA 516 consensus_5428#1 ------------------------------------------------------------ consensus_5428#0 AAAAACAACACTTACATACACACCTATATACATAATGGCACGTGAAAATGGGATTATTCC 576 consensus_5428#1 ------------------------------------------------------------ consensus_5428#0 GCTGCGGACAAATGAGTGTGTGAATGTGTGTGAGTGGATATATCTCTGTCGTCGCAAGTT 636 consensus_5428#1 ------------------------------------------------------------ consensus_5428#0 GTCATCACGATTCGA 651 consensus_5428#1 --------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||