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Anopheles gambiae
cluster # 5428 cluster # 5428       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5428#0 length = 651 sequences # 3  
consensus_5428#1 length = 366 sequences # 1  

consensusID : consensus_5428#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 651
fasta sequence
                              [CCGGGGGAGACGATTCGATCCATAATGGTCCCATGAGTGGCGGACCGGCGGGGTGCGAAAACGAAGAAAACGAAGAAGAAGAGGAAGGAAACAATAAGAAATGACCTGAACATATTTTCCATATTATATGAAAGTAACTGTTTTTTGTCTGTTTTGATTCTTTTTTATACTTATATATACACCCACAAATACTACGACAAAACTGAACTGATAATTATGAGACGGGGTGGCGAACTATTGTACGATCGAGGCAGGCAAGCCAGCAGGAGAGGTTGGAGTTACA-----AA-AAGAAGAAGCAGAACACGAAAAGTGGTGAACCATTTGTTGTAGAAGAGACAATTTCCATTAGCGTACGCGCGCACGCTGTAACAACATT-TTCCGTATTTACACCGGTGTGTACTATTTTGTATGTG---TTTTTTTCTGCTTTCCGTTCAAAGTTTTCACTACATCCAAAACGGTGCAACAATTT-CTGG-AAGGTGAAAGAGTTCCCGAAGTGGGGAATATACACAAACACTCAAAAAAACAACACTTACATACACACCTATATACATAATGGCACGTGAAAATGGGATTATTCCGCTGCGGACAAATGAGTGTGTGAATGTGTGTGAGTGGATATATCTCTGTCGTCGCAAGTTGTCATCACGATTCGA]

[+] EMBL BM577716             [CCGGGGGAGACGATTCGATCCATAATGGTCCCATGAGTGGCGGACCGGCGGGGTGCGAAAACGAAGAAAACGAAGAAGAAGAGGAAGGAAACAATAAGAAATGACCTGAACATATTTTCCATATTATATGAAAGTAACTGTTTTTTGTCTGTTTTGATTCTTTTTTATACTTATATATACACCCACAAATACTACGACAAAACTGAACTGATAATTATGAGACGGGGTGGCGAACTATTGTACGATCGAGGCAGGCAAGCCAGCAGGAGAGGTTGGAGTTACA     AA AAGAAGAAGCAGAACACGAAAAGTGGTGAACCATTTGTTGTAGAAGAGACAATTTCCATTAGCGTACGCGCGCACGCTGTAACAACATT TTCCGTATTTACACCGtag                                                                                                                                                                                                                                                                       ]
[+] EMBL AL933728             [                                       cgagtnCGGC GGGTGCGAAAACGAAGAAAACGAAGAA AAGAGGAAGGAAACAATAAGAAATGACCTGAACATATTTTCCATATTATATGAAAGTAACTGTTTTTTGTCTGTTTTGATTCTTTTTTATACTTATATATACACCCACAAATACTACGACAAAACTGAACTGATAATTATGAGACGGGGTGGCGAACTATTGTACGATCGAGGCAGGCAAGCCAGCAGGAGAGGTTGGAGTTACA     AA AAGAAGAAGCAGAACACGAAAAGTGGTGAACCATTTGTTGTA AAGAGACAATTTCCATTAGCGTACGCGCGCACGCTGTAACAACATTATTCCGTATTTACACCGGTGTGTACTATTTTGTATGTG   TTTTTTTCTGCTTTCCGTTCAAAGTTTTCACTACATCCAAAACGGTGCAACAATTT CTGG AAGGTGAAAGAGTTCCCGAAGTGGGGAATATACACAAACACTCAAAAAAACAACACTTACATACACACCTATATACATAATGGCACGTGAAAATGGGATTAT                                                                              ]
[+] EMBL BM586321             [                                                                                                                                                 TGTCTGTTTTGATTCTTTTTTATACTTATATATACACCCACAAATACTACGACAAAACTGAACTGATAATTATGAGAGGGGGAGGCGAACTATTGTACGATCGAGGCAAGCAAGCCAGCAGGAGAGGTTGGGGTTACAAGAAGAAGAAGAAGAAGCAGAACACGAAAAGTGGTGAACCATTTGTTGTAGAAGAGACAATTTCCATTAGCGTACGCGCGCACGCTGTACCAACATT TTCCGTATTTACACC GTGTTTACTATTTTGTATGTGTTTTTTTTTTCTGCTTTCCGTTTAAACTTTTCACTACATCCAAAACGGTGCAACAATTTACTGGAAAGGTGAAAGAGTTCCCGAAATAAGGAATATACACAAACACTAAAAAAAACAACACTTACATACACACCTATATACATAATGGCACGTGAAAATGGGATTATTCCGCTGCGGACAAATGAGTGTGTGAATGTGTGTGAGTGGATATATCTCTGTCGTCGCAAGTTGTCATCACGATTCGA]


>consensus_5428#0 CCGGGGGAGACGATTCGATCCATAATGGTCCCATGAGTGGCGGACCGGCGGGGTGCGAAA ACGAAGAAAACGAAGAAGAAGAGGAAGGAAACAATAAGAAATGACCTGAACATATTTTCC ATATTATATGAAAGTAACTGTTTTTTGTCTGTTTTGATTCTTTTTTATACTTATATATAC ACCCACAAATACTACGACAAAACTGAACTGATAATTATGAGACGGGGTGGCGAACTATTG TACGATCGAGGCAGGCAAGCCAGCAGGAGAGGTTGGAGTTACAAAAAGAAGAAGCAGAAC ACGAAAAGTGGTGAACCATTTGTTGTAGAAGAGACAATTTCCATTAGCGTACGCGCGCAC GCTGTAACAACATTTTCCGTATTTACACCGGTGTGTACTATTTTGTATGTGTTTTTTTCT GCTTTCCGTTCAAAGTTTTCACTACATCCAAAACGGTGCAACAATTTCTGGAAGGTGAAA GAGTTCCCGAAGTGGGGAATATACACAAACACTCAAAAAAACAACACTTACATACACACC TATATACATAATGGCACGTGAAAATGGGATTATTCCGCTGCGGACAAATGAGTGTGTGAA TGTGTGTGAGTGGATATATCTCTGTCGTCGCAAGTTGTCATCACGATTCGA



consensusID : consensus_5428#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 366
fasta sequence
                              [CCGCCCACGCGTCCGCCATGAGTGGCGGACCGGCGGGGTACGAAAACGAAGAAAACGAAGAAGAAGAAGAGGAAGGAAACAATAAGAAATGACCTGAACATATTTTCCATATTATATGAAAGTAACTGTTTTTTGTCTGTTTTGATTCTTTTTTATACTTATATATACACCCACAAATACTACGACAAAACTGAACTGATAATTATGAGGCGGGGAGGCGAACTATTGTACGATCGAGGCAGGCAAGTCAGCAGGAGAAGTTGGAGTTACAAGAAGAAGAAGAAGCAAAAGAAGCAGAAGAAGCAGAACACGAAAAGTGGTGAACCATTTGTTGTAGAAGAGACAATTTCCATTAGCGTACGCGCG]

[+] EMBL BM630787             [CCGCCCACGCGTCCGCCATGAGTGGCGGACCGGCGGGGTACGAAAACGAAGAAAACGAAGAAGAAGAAGAGGAAGGAAACAATAAGAAATGACCTGAACATATTTTCCATATTATATGAAAGTAACTGTTTTTTGTCTGTTTTGATTCTTTTTTATACTTATATATACACCCACAAATACTACGACAAAACTGAACTGATAATTATGAGGCGGGGAGGCGAACTATTGTACGATCGAGGCAGGCAAGTCAGCAGGAGAAGTTGGAGTTACAAGAAGAAGAAGAAGCAAAAGAAGCAGAAGAAGCAGAACACGAAAAGTGGTGAACCATTTGTTGTAGAAGAGACAATTTCCATTAGCGTACGCGCG]


>consensus_5428#1 CCGCCCACGCGTCCGCCATGAGTGGCGGACCGGCGGGGTACGAAAACGAAGAAAACGAAG AAGAAGAAGAGGAAGGAAACAATAAGAAATGACCTGAACATATTTTCCATATTATATGAA AGTAACTGTTTTTTGTCTGTTTTGATTCTTTTTTATACTTATATATACACCCACAAATAC TACGACAAAACTGAACTGATAATTATGAGGCGGGGAGGCGAACTATTGTACGATCGAGGC AGGCAAGTCAGCAGGAGAAGTTGGAGTTACAAGAAGAAGAAGAAGCAAAAGAAGCAGAAG AAGCAGAACACGAAAAGTGGTGAACCATTTGTTGTAGAAGAGACAATTTCCATTAGCGTA CGCGCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5428#0      CCGGGGGAGACGATTCGATCCATAATGGTCCCATGAGTGGCGGACCGGCGGGGTGCGAAA 60
consensus_5428#1      ---------------CCGCCCACGCGTCCGCCATGAGTGGCGGACCGGCGGGGTACGAAA 45
                                     *   ***        ************************ *****

consensus_5428#0      ACGAAGAAAACGAAGAAGAAGA---GGAAGGAAACAATAAGAAATGACCTGAACATATTT 117
consensus_5428#1      ACGAAGAAAACGAAGAAGAAGAAGAGGAAGGAAACAATAAGAAATGACCTGAACATATTT 105
                      **********************   ***********************************

consensus_5428#0      TCCATATTATATGAAAGTAACTGTTTTTTGTCTGTTTTGATTCTTTTTTATACTTATATA 177
consensus_5428#1      TCCATATTATATGAAAGTAACTGTTTTTTGTCTGTTTTGATTCTTTTTTATACTTATATA 165
                      ************************************************************

consensus_5428#0      TACACCCACAAATACTACGACAAAACTGAACTGATAATTATGAGACGGGGTGGCGAACTA 237
consensus_5428#1      TACACCCACAAATACTACGACAAAACTGAACTGATAATTATGAGGCGGGGAGGCGAACTA 225
                      ******************************************** ***** *********

consensus_5428#0      TTGTACGATCGAGGCAGGCAAGCCAGCAGGAGAGGTTGGAGTTACAAAAAGAAGAAG--- 294
consensus_5428#1      TTGTACGATCGAGGCAGGCAAGTCAGCAGGAGAAGTTGGAGTTACAAGAAGAAGAAGAAG 285
                      ********************** ********** ************* *********   

consensus_5428#0      ------------------CAGAACACGAAAAGTGGTGAACCATTTGTTGTAGAAGAGACA 336
consensus_5428#1      CAAAAGAAGCAGAAGAAGCAGAACACGAAAAGTGGTGAACCATTTGTTGTAGAAGAGACA 345
                                        ******************************************

consensus_5428#0      ATTTCCATTAGCGTACGCGCGCACGCTGTAACAACATTTTCCGTATTTACACCGGTGTGT 396
consensus_5428#1      ATTTCCATTAGCGTACGCGCG--------------------------------------- 366
                      *********************                                       

consensus_5428#0      ACTATTTTGTATGTGTTTTTTTCTGCTTTCCGTTCAAAGTTTTCACTACATCCAAAACGG 456
consensus_5428#1      ------------------------------------------------------------
                                                                                  

consensus_5428#0      TGCAACAATTTCTGGAAGGTGAAAGAGTTCCCGAAGTGGGGAATATACACAAACACTCAA 516
consensus_5428#1      ------------------------------------------------------------
                                                                                  

consensus_5428#0      AAAAACAACACTTACATACACACCTATATACATAATGGCACGTGAAAATGGGATTATTCC 576
consensus_5428#1      ------------------------------------------------------------
                                                                                  

consensus_5428#0      GCTGCGGACAAATGAGTGTGTGAATGTGTGTGAGTGGATATATCTCTGTCGTCGCAAGTT 636
consensus_5428#1      ------------------------------------------------------------
                                                                                  

consensus_5428#0      GTCATCACGATTCGA 651
consensus_5428#1      ---------------
                                     




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)