cluster # 5428

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Anopheles gambiae
cluster # 5428 cluster # 5428 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5428#0 length = 651 sequences # 3

consensus_5428#1 length = 366 sequences # 1

consensusID : consensus_5428#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 651
fasta sequence

                              [CCGGGGGAGACGATTCGATCCATAATGGTCCCATGAGTGGCGGACCGGCGGGGTGCGAAAACGAAGAAAACGAAGAAGAAGAGGAAGGAAACAATAAGAAATGACCTGAACATATTTTCCATATTATATGAAAGTAACTGTTTTTTGTCTGTTTTGATTCTTTTTTATACTTATATATACACCCACAAATACTACGACAAAACTGAACTGATAATTATGAGACGGGGTGGCGAACTATTGTACGATCGAGGCAGGCAAGCCAGCAGGAGAGGTTGGAGTTACA-----AA-AAGAAGAAGCAGAACACGAAAAGTGGTGAACCATTTGTTGTAGAAGAGACAATTTCCATTAGCGTACGCGCGCACGCTGTAACAACATT-TTCCGTATTTACACCGGTGTGTACTATTTTGTATGTG---TTTTTTTCTGCTTTCCGTTCAAAGTTTTCACTACATCCAAAACGGTGCAACAATTT-CTGG-AAGGTGAAAGAGTTCCCGAAGTGGGGAATATACACAAACACTCAAAAAAACAACACTTACATACACACCTATATACATAATGGCACGTGAAAATGGGATTATTCCGCTGCGGACAAATGAGTGTGTGAATGTGTGTGAGTGGATATATCTCTGTCGTCGCAAGTTGTCATCACGATTCGA]

[+] EMBL BM577716             [CCGGGGGAGACGATTCGATCCATAATGGTCCCATGAGTGGCGGACCGGCGGGGTGCGAAAACGAAGAAAACGAAGAAGAAGAGGAAGGAAACAATAAGAAATGACCTGAACATATTTTCCATATTATATGAAAGTAACTGTTTTTTGTCTGTTTTGATTCTTTTTTATACTTATATATACACCCACAAATACTACGACAAAACTGAACTGATAATTATGAGACGGGGTGGCGAACTATTGTACGATCGAGGCAGGCAAGCCAGCAGGAGAGGTTGGAGTTACA     AA AAGAAGAAGCAGAACACGAAAAGTGGTGAACCATTTGTTGTAGAAGAGACAATTTCCATTAGCGTACGCGCGCACGCTGTAACAACATT TTCCGTATTTACACCGtag                                                                                                                                                                                                                                                                       ]
[+] EMBL AL933728             [                                       cgagtnCGGC GGGTGCGAAAACGAAGAAAACGAAGAA AAGAGGAAGGAAACAATAAGAAATGACCTGAACATATTTTCCATATTATATGAAAGTAACTGTTTTTTGTCTGTTTTGATTCTTTTTTATACTTATATATACACCCACAAATACTACGACAAAACTGAACTGATAATTATGAGACGGGGTGGCGAACTATTGTACGATCGAGGCAGGCAAGCCAGCAGGAGAGGTTGGAGTTACA     AA AAGAAGAAGCAGAACACGAAAAGTGGTGAACCATTTGTTGTA AAGAGACAATTTCCATTAGCGTACGCGCGCACGCTGTAACAACATTATTCCGTATTTACACCGGTGTGTACTATTTTGTATGTG   TTTTTTTCTGCTTTCCGTTCAAAGTTTTCACTACATCCAAAACGGTGCAACAATTT CTGG AAGGTGAAAGAGTTCCCGAAGTGGGGAATATACACAAACACTCAAAAAAACAACACTTACATACACACCTATATACATAATGGCACGTGAAAATGGGATTAT                                                                              ]
[+] EMBL BM586321             [                                                                                                                                                 TGTCTGTTTTGATTCTTTTTTATACTTATATATACACCCACAAATACTACGACAAAACTGAACTGATAATTATGAGAGGGGGAGGCGAACTATTGTACGATCGAGGCAAGCAAGCCAGCAGGAGAGGTTGGGGTTACAAGAAGAAGAAGAAGAAGCAGAACACGAAAAGTGGTGAACCATTTGTTGTAGAAGAGACAATTTCCATTAGCGTACGCGCGCACGCTGTACCAACATT TTCCGTATTTACACC GTGTTTACTATTTTGTATGTGTTTTTTTTTTCTGCTTTCCGTTTAAACTTTTCACTACATCCAAAACGGTGCAACAATTTACTGGAAAGGTGAAAGAGTTCCCGAAATAAGGAATATACACAAACACTAAAAAAAACAACACTTACATACACACCTATATACATAATGGCACGTGAAAATGGGATTATTCCGCTGCGGACAAATGAGTGTGTGAATGTGTGTGAGTGGATATATCTCTGTCGTCGCAAGTTGTCATCACGATTCGA]




>consensus_5428#0
CCGGGGGAGACGATTCGATCCATAATGGTCCCATGAGTGGCGGACCGGCGGGGTGCGAAA
ACGAAGAAAACGAAGAAGAAGAGGAAGGAAACAATAAGAAATGACCTGAACATATTTTCC
ATATTATATGAAAGTAACTGTTTTTTGTCTGTTTTGATTCTTTTTTATACTTATATATAC
ACCCACAAATACTACGACAAAACTGAACTGATAATTATGAGACGGGGTGGCGAACTATTG
TACGATCGAGGCAGGCAAGCCAGCAGGAGAGGTTGGAGTTACAAAAAGAAGAAGCAGAAC
ACGAAAAGTGGTGAACCATTTGTTGTAGAAGAGACAATTTCCATTAGCGTACGCGCGCAC
GCTGTAACAACATTTTCCGTATTTACACCGGTGTGTACTATTTTGTATGTGTTTTTTTCT
GCTTTCCGTTCAAAGTTTTCACTACATCCAAAACGGTGCAACAATTTCTGGAAGGTGAAA
GAGTTCCCGAAGTGGGGAATATACACAAACACTCAAAAAAACAACACTTACATACACACC
TATATACATAATGGCACGTGAAAATGGGATTATTCCGCTGCGGACAAATGAGTGTGTGAA
TGTGTGTGAGTGGATATATCTCTGTCGTCGCAAGTTGTCATCACGATTCGA

consensusID : consensus_5428#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 366
fasta sequence

                              [CCGCCCACGCGTCCGCCATGAGTGGCGGACCGGCGGGGTACGAAAACGAAGAAAACGAAGAAGAAGAAGAGGAAGGAAACAATAAGAAATGACCTGAACATATTTTCCATATTATATGAAAGTAACTGTTTTTTGTCTGTTTTGATTCTTTTTTATACTTATATATACACCCACAAATACTACGACAAAACTGAACTGATAATTATGAGGCGGGGAGGCGAACTATTGTACGATCGAGGCAGGCAAGTCAGCAGGAGAAGTTGGAGTTACAAGAAGAAGAAGAAGCAAAAGAAGCAGAAGAAGCAGAACACGAAAAGTGGTGAACCATTTGTTGTAGAAGAGACAATTTCCATTAGCGTACGCGCG]

[+] EMBL BM630787             [CCGCCCACGCGTCCGCCATGAGTGGCGGACCGGCGGGGTACGAAAACGAAGAAAACGAAGAAGAAGAAGAGGAAGGAAACAATAAGAAATGACCTGAACATATTTTCCATATTATATGAAAGTAACTGTTTTTTGTCTGTTTTGATTCTTTTTTATACTTATATATACACCCACAAATACTACGACAAAACTGAACTGATAATTATGAGGCGGGGAGGCGAACTATTGTACGATCGAGGCAGGCAAGTCAGCAGGAGAAGTTGGAGTTACAAGAAGAAGAAGAAGCAAAAGAAGCAGAAGAAGCAGAACACGAAAAGTGGTGAACCATTTGTTGTAGAAGAGACAATTTCCATTAGCGTACGCGCG]




>consensus_5428#1
CCGCCCACGCGTCCGCCATGAGTGGCGGACCGGCGGGGTACGAAAACGAAGAAAACGAAG
AAGAAGAAGAGGAAGGAAACAATAAGAAATGACCTGAACATATTTTCCATATTATATGAA
AGTAACTGTTTTTTGTCTGTTTTGATTCTTTTTTATACTTATATATACACCCACAAATAC
TACGACAAAACTGAACTGATAATTATGAGGCGGGGAGGCGAACTATTGTACGATCGAGGC
AGGCAAGTCAGCAGGAGAAGTTGGAGTTACAAGAAGAAGAAGAAGCAAAAGAAGCAGAAG
AAGCAGAACACGAAAAGTGGTGAACCATTTGTTGTAGAAGAGACAATTTCCATTAGCGTA
CGCGCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5428#0      CCGGGGGAGACGATTCGATCCATAATGGTCCCATGAGTGGCGGACCGGCGGGGTGCGAAA 60
consensus_5428#1      ---------------CCGCCCACGCGTCCGCCATGAGTGGCGGACCGGCGGGGTACGAAA 45
                                     *   ***        ************************ *****

consensus_5428#0      ACGAAGAAAACGAAGAAGAAGA---GGAAGGAAACAATAAGAAATGACCTGAACATATTT 117
consensus_5428#1      ACGAAGAAAACGAAGAAGAAGAAGAGGAAGGAAACAATAAGAAATGACCTGAACATATTT 105
                      **********************   ***********************************

consensus_5428#0      TCCATATTATATGAAAGTAACTGTTTTTTGTCTGTTTTGATTCTTTTTTATACTTATATA 177
consensus_5428#1      TCCATATTATATGAAAGTAACTGTTTTTTGTCTGTTTTGATTCTTTTTTATACTTATATA 165
                      ************************************************************

consensus_5428#0      TACACCCACAAATACTACGACAAAACTGAACTGATAATTATGAGACGGGGTGGCGAACTA 237
consensus_5428#1      TACACCCACAAATACTACGACAAAACTGAACTGATAATTATGAGGCGGGGAGGCGAACTA 225
                      ******************************************** ***** *********

consensus_5428#0      TTGTACGATCGAGGCAGGCAAGCCAGCAGGAGAGGTTGGAGTTACAAAAAGAAGAAG--- 294
consensus_5428#1      TTGTACGATCGAGGCAGGCAAGTCAGCAGGAGAAGTTGGAGTTACAAGAAGAAGAAGAAG 285
                      ********************** ********** ************* *********   

consensus_5428#0      ------------------CAGAACACGAAAAGTGGTGAACCATTTGTTGTAGAAGAGACA 336
consensus_5428#1      CAAAAGAAGCAGAAGAAGCAGAACACGAAAAGTGGTGAACCATTTGTTGTAGAAGAGACA 345
                                        ******************************************

consensus_5428#0      ATTTCCATTAGCGTACGCGCGCACGCTGTAACAACATTTTCCGTATTTACACCGGTGTGT 396
consensus_5428#1      ATTTCCATTAGCGTACGCGCG--------------------------------------- 366
                      *********************                                       

consensus_5428#0      ACTATTTTGTATGTGTTTTTTTCTGCTTTCCGTTCAAAGTTTTCACTACATCCAAAACGG 456
consensus_5428#1      ------------------------------------------------------------
                                                                                  

consensus_5428#0      TGCAACAATTTCTGGAAGGTGAAAGAGTTCCCGAAGTGGGGAATATACACAAACACTCAA 516
consensus_5428#1      ------------------------------------------------------------
                                                                                  

consensus_5428#0      AAAAACAACACTTACATACACACCTATATACATAATGGCACGTGAAAATGGGATTATTCC 576
consensus_5428#1      ------------------------------------------------------------
                                                                                  

consensus_5428#0      GCTGCGGACAAATGAGTGTGTGAATGTGTGTGAGTGGATATATCTCTGTCGTCGCAAGTT 636
consensus_5428#1      ------------------------------------------------------------
                                                                                  

consensus_5428#0      GTCATCACGATTCGA 651
consensus_5428#1      ---------------