These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5429#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 957 fasta sequence [CCGCGCCAATTCTAACCCAGTGTCTCCGTACAGTATTCACCGTCAGCTTTTCTCAAAACAAAAATCTCAAATCGCGTGTAGAGCCTGTGTACCACTTCTTAGACGAAGTTGTCTTGCGAAGCATACCCAGTCTTGCAGCATCTCCGGTTTGCCTTGAATTAGAAAGTTGAACTCTGCAGCGAGAGTCCGCAGTTCGTCCAAGTCAGTCAAGCCTAATAGTCAAGCCTAGTGATGATGCAAATGAACAACATCAATCTCACCGAGGTTGGAAGAAGAGAGAATGACTTTCAGCACCCAATACTGGTCAACTATAGATCTCAAACGCTGAAGGAAATGCCCGCAAGGTTCATATTTGAATGTGCTCAAAAGTTGGAAATGAAACCGCTCACTTCTGCCACGGCAGCAATTTTGTACCATCGATTCTTCCGAGAGTTGGACGACACGGAATACGATCCGTATATGATCGCATGCTCCTGCCTGTATCTGGCCGGTAAAATCAAAGACGACAAAGTAAGGAAACGGGATGTTATTAACGTGGCCCACAACACGATCCACCGTGGTGCCCCGCCGCTAGAACCGTGCGACGAGTACTGGTCGATGTGGGATACGATAGTGCAAGCCGAGCTGTTCATTGCGCGCGTGCTCAAGTTCGACATGACGATAGTGCACCCGCACAAGTACATGCTGCACTACATGAAATCGCTGCAAGATCAGTTCGGTGCGCAAGATTGGCAGGCGATGCCCGTTGCTAGGGCTGCCGCTTCCTTTCTGCAGGATTTTCACCACAGTCCCAAAATTCTCGACTACAAACCGGCCCATACGGGCGTGTGCTGCCTTGCGCTGGCATTTCAAGTGTATGGAGTGNCGGTCCCACTTATGGACGAAATGGATGAGACCACGCGCTGGTACNATATATTCTGCCCGGAACTGACGCGCGAACAGCATTGGGAGATAATG] [+] EMBL BM605714 [CCGCGCCAATTCTAACCCAGTGTCTCCGTACAGTATTCACCGTCAGCTTTTCTCAAAACAAAAATCTCAAATCGCGTGTAGAGCCTGTGTACCACTTCTTAGACGAAGTTGTCTTGCGAAGCATACCCAGTCTTGCAGCATCTCCGGTTTGCCTTGAATTAGAAAGTTGAACTCTGCAGCGAGAGTCCGCAGTTCGTCCAAGTCAGTCAAGCCTAATAGTCAAGCCTAGTGATGATGCAAATGAACAACATCAATCTCACCGAGGTTGGAAGAAGAGAGAATGACTTTCAGCACCCAATACTGGTCAACTATAGATCTCAAACGCTGAAGGAAATGCCCGCAAGGTTCATATTTGAATGTGCTCAAAAGTTGGAAATGAAACCGCTCACTTCTGCCACGGCAGCAATTTTGTACCATCGATTCTTCCGAGAGTTGGACGACACGGAATACGATCCGTATATGATCGCATGCTCCTGCCTGTATCTGGCCGGTAAAATCAAAGACGACAAAGTAAGGAAACGGGATGTTATTAACGTGGCCCACAACACGATCCACCGTGGTGCCCCGCCGCTAGAACCGTGCGACGAGTACTGGTCGATGTGGGATACGATAGTGCAAGCCGAGCTGTTCATTGCGCGCGTGCTCAAGTTCGACATGACGATAGTGCACCCGCACAAGTACATGCTGCACT ] [+] EMBL BX620924 [ ATAGTCAAGCCTAGTGATGATGCAAATGAACAACATCAATCTCACCGAGGTTGGAAGAAGAGAGAATGACTTTCAGCACCCAATACTGGTCAACTATAGATCTCAAACGCTGAAGGAAATGCCCGCAAGGTTCATATTTGAATGTGCTCAAAAGTTGGAAATGAAACCGCTCACTTCTGCCACGGCAGCAATTTTGTACCATCGATTCTTCCGAGAGTTGGACGACACGGAATACGATCCGTATATGATCGCATGCTCCTGCCTGTATCTGGCCGGTAAAATCAAAGACGACAAAGTAAGGAAACGGGATGTTATTAACGTGGCCCACAACACGATCCACCGTGGTGCCCCGCCGCTAGAACCGTGCGACGAGTACTGGTCGATGTGGGATACGATAGTGCAAGCCGAGCTGTTCATTGCGCGCGTGCTCAAGTTCGACATGACGATAGTGCACCCGCACAAGTACATGCTGCACTACATGAAATCGCTGCAAGATCAGTTCGGTGCGCAAGATTGGCAGGCGATGCCCGTTGCTAGGGCTGCCGCTTCCTTTCTGCAGGATTTTCACCACAGTCCCAAAATTCTCGACTACAAACCGGCCCATACGGGCGTGTGCTGCCTTGCGCTGGCATTTCAAGTGTATGGAGTGNCGGTCCCACTTATGGACGAAATGGATGAGACCACGCGCTGGTACNATATATTCTGCCCGGAACTGACGCGCGAACAGCATTGGGAGATAATG] consensusID : consensus_5429#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 609 fasta sequence [ATTGAGGCGAGAGGTCACCAATTCTAACCCAGTGTCTCCGTACAGTATTCACAGTCATCTTTTCTCAAAACAANAAATCTCAAATCGCGTGTACAGCCTGTGTACCACTTCATAGACGAAGTTGTTTTGCGAAGCATACCCAGTCTTGCAGCATCTCCGGTTTGCCTTGAATTAGAAAGTTGAACTCTGCAGCGAGAGTCCGCAGTTCGTCCAAGTCAGTCAAGCCTAATAGTCAAGTCTAGTGATGATGCAAATGAACAACATCAATCTCACCGAGGTTGGAAGAAGAGAGAATGACTTTCAGCACCCAATACTGGTCAACTATAGATCTCAAACGCTGAAGGAAATGCCCGCAAGGTTCATATTTGAATGTGCTCAAAAGTTGGAAATGAAACCGCTCACTTCTGCCACGGCAGCAATTTTGTACCATCGATTCTTCCGAGAGTTGGACGACACGGAATACGATCCGTATGTGAGTATCAGCAATGCATGAAATGGATTAGTTTTGTTTGTTTTTTGCTTTAGAATACTCAAGCAGTTTCAAGTGGCTGACTGTTGCAAAGGCTTAACGGGGAGANGGCCTTAAAGTGCAGCCCGCTTTACTTCGCA] [+] EMBL BX620462 [ATTGAGGCGAGAGGTCACCAATTCTAACCCAGTGTCTCCGTACAGTATTCACAGTCATCTTTTCTCAAAACAANAAATCTCAAATCGCGTGTACAGCCTGTGTACCACTTCATAGACGAAGTTGTTTTGCGAAGCATACCCAGTCTTGCAGCATCTCCGGTTTGCCTTGAATTAGAAAGTTGAACTCTGCAGCGAGAGTCCGCAGTTCGTCCAAGTCAGTCAAGCCTAATAGTCAAGTCTAGTGATGATGCAAATGAACAACATCAATCTCACCGAGGTTGGAAGAAGAGAGAATGACTTTCAGCACCCAATACTGGTCAACTATAGATCTCAAACGCTGAAGGAAATGCCCGCAAGGTTCATATTTGAATGTGCTCAAAAGTTGGAAATGAAACCGCTCACTTCTGCCACGGCAGCAATTTTGTACCATCGATTCTTCCGAGAGTTGGACGACACGGAATACGATCCGTATGTGAGTATCAGCAATGCATGAAATGGATTAGTTTTGTTTGTTTTTTGCTTTAGAATACTCAAGCAGTTTCAAGTGGCTGACTGTTGCAAAGGCTTAACGGGGAGANGGCCTTAAAGTGCAGCCCGCTTTACTTCGCA] consensusID : consensus_5429#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 435 fasta sequence [ATCCCCGAGGTTACAGCATTTTGTACCATCGATTCTTCCGAGAGTTGGACGACACGGAATACGATCCGTATATGATCGCATGCTCCTGCCTGTATCTGGCCGGTAAAATCAAAGACGACAAAGTAAGGAAACGGGATGTTATTAACGTGGCCCACAACACGATCCACCGTGGTGCCCCGCCGCTAGAACCGTGCGACGAGTACTGGTCGATGTGGGATACGATAGTGCAAGCCGAGCTGTTCATTGCGCGCGTGCTCAAGTTCGACATGACGATAGTGCACCCGCACAAGTACATGCTGCACTACATGAAATCGCTGCAAGATCAGTTCGGTGCGCAAGATTGGCAGGCGATGCCCGTTGCTAGGGCTGCCGCTTCCTTTCTGCAGGATTTTCACCACAGTCCCAAAATTCTCGACTACAAACCGGCCCATACGG] [+] EMBL AL933764 [ATCCCCGAGGTTACAGCATTTTGTACCATCGATTCTTCCGAGAGTTGGACGACACGGAATACGATCCGTATATGATCGCATGCTCCTGCCTGTATCTGGCCGGTAAAATCAAAGACGACAAAGTAAGGAAACGGGATGTTATTAACGTGGCCCACAACACGATCCACCGTGGTGCCCCGCCGCTAGAACCGTGCGACGAGTACTGGTCGATGTGGGATACGATAGTGCAAGCCGAGCTGTTCATTGCGCGCGTGCTCAAGTTCGACATGACGATAGTGCACCCGCACAAGTACATGCTGCACTACATGAAATCGCTGCAAGATCAGTTCGGTGCGCAAGATTGGCAGGCGATGCCCGTTGCTAGGGCTGCCGCTTCCTTTCTGCAGGATTTTCACCACAGTCCCAAAATTCTCGACTACAAACCGGCCCATACGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5429#0 CCGCGCCAATTCTAACCCAGTGTCTCCGTACAGTATTCACCGTCAGCTTTTCTCAAAACA 60 consensus_5429#2 ------------------------------------------------------------ consensus_5429#1 ------------------------------------------------------------ consensus_5429#0 AAAATCTCAAATCGCGTGTAGAGCCTGTGTACCACTTCTTAGACGAAGTTGTCTTGCGAA 120 consensus_5429#2 ------------------------------------------------------------ consensus_5429#1 ------------------------------------------------------------ consensus_5429#0 GCATACCCAGTCTTGCAGCATCTCCGGTTTGCCTTGAATTAGAAAGTTGAACTCTGCAGC 180 consensus_5429#2 ------------------------------------------------------------ consensus_5429#1 ------------------------------------------------------------ consensus_5429#0 GAGAGTCCGCAGTTCGTCCAAGTCAGTCAAGCCTAATAGTCAAGCCTAGTGATGATGCAA 240 consensus_5429#2 ------------------------------------------------------------ consensus_5429#1 ------------------------------------------------------------ consensus_5429#0 ATGAACAACATCAATCTCACCGAGGTTGGAAGAAGAGAGAATGACTTTCAGCACCCAATA 300 consensus_5429#2 ------------------------------------------------------------ consensus_5429#1 ------------------------------------------------ATTGAGGCGAGA 12 consensus_5429#0 CTGGTCAACTATAGATCTCAAACGCTGAAGGAAATGCCCGCAAGGTTCATATTTGAATGT 360 consensus_5429#2 ------------------------------------------------------------ consensus_5429#1 GGTCACCAATTCTAACCCAGTGTCTCCGTACAGTATTCACAGTCATCTTTTCTCAAAACA 72 consensus_5429#0 GCTCAAAAGTTGGAAATGAAACCGCTCACTTCTGCCACGGCAG-CAATTTTGTACCATCG 419 consensus_5429#2 ---------------------------ATCCCCGAGGTTACAG-CA-TTTTGTACCATCG 31 consensus_5429#1 ANAAATCTCAAATCGCGTGTACAGCCTGTGTACCACTTCATAGACGAAGTTGTTTTGCGA 132 ** * **** consensus_5429#0 ATTCTTCCGAGAGTTGGACGACACGGAATACGATCCGTATATGA---TCGCATGCTCCTG 476 consensus_5429#2 ATTCTTCCGAGAGTTGGACGACACGGAATACGATCCGTATATGA---TCGCATGCTCCTG 88 consensus_5429#1 AGCATACCCAGTCTTGCAGCATCTCCGGTTTGCCTTGAATTAGAAAGTTGAACTCTGCAG 192 * * ** ** *** * * * * * ** ** * * * ** * * consensus_5429#0 CCTGTATCTGG---CCGGTAAAATCAAAGACGACAAAGTAAGGAAACGGGATGTTATTAA 533 consensus_5429#2 CCTGTATCTGG---CCGGTAAAATCAAAGACGACAAAGTAAGGAAACGGGATGTTATTAA 145 consensus_5429#1 CGAGAGTCCGCAGTTCGTCCAAGTCAGTCAAGCCTAATAGTCAAGTCTAGTGATGATGCA 252 * * ** * ** ** *** * * * ** * * * * ** * consensus_5429#0 CGTGGCCCACAACACGATCCACCGTGGTGCCCCGCCGCTAGAACCGT-----GCGACGAG 588 consensus_5429#2 CGTGGCCCACAACACGATCCACCGTGGTGCCCCGCCGCTAGAACCGT-----GCGACGAG 200 consensus_5429#1 AATGAACAACATCA-ATCTCACCGAGGTTGGAAGAAGAGAGAATGACTTTCAGCACCCAA 311 ** * *** ** ***** *** * * **** ** * * consensus_5429#0 TACTGGTCGATGTGGGAT-----ACGATAGTGCAAG---CCGAGCTGTTCAT-TGCGCGC 639 consensus_5429#2 TACTGGTCGATGTGGGAT-----ACGATAGTGCAAG---CCGAGCTGTTCAT-TGCGCGC 251 consensus_5429#1 TACTGGTCAACTATAGATCTCAAACGCTGAAGGAAATGCCCGCAAGGTTCATATTTGAAT 371 ******** * *** *** * * ** *** ****** * * consensus_5429#0 GTGCTCAA--GTTCGACATGA-------CGATAGTGCACCCGCA-CAAGTACATGCTGCA 689 consensus_5429#2 GTGCTCAA--GTTCGACATGA-------CGATAGTGCACCCGCA-CAAGTACATGCTGCA 301 consensus_5429#1 GTGCTCAAAAGTTGGAAATGAAACCGCTCACTTCTGCCACGGCAGCAATTTTGTACCATC 431 ******** *** ** **** * * *** * *** *** * * * consensus_5429#0 ----CTACATGAAAT----CGCTGCAAGATCAGTTCGGTGCGCAAG-ATTGGCAGGCGAT 740 consensus_5429#2 ----CTACATGAAAT----CGCTGCAAGATCAGTTCGGTGCGCAAG-ATTGGCAGGCGAT 352 consensus_5429#1 GATTCTTCCGAGAGTTGGACGACACGGAATACGATCCGTATGTGAGTATCAGCAATGCAT 491 ** * * * ** * ** * ** ** * ** ** *** ** consensus_5429#0 GCCCGTTGCTAGGGCTGCCGCTTCCTTTCTGCAGGATTTTCACCACAGTCCCAAAATTCT 800 consensus_5429#2 GCCCGTTGCTAGGGCTGCCGCTTCCTTTCTGCAGGATTTTCACCACAGTCCCAAAATTCT 412 consensus_5429#1 GAAATGGATTAGTTTTGTTTGTTTTTTGCTTTAGAATACTCAA-GCAGTTTCAAG-TGGC 549 * *** ** ** ** ** ** ** *** **** *** * consensus_5429#0 CGACTACAAACCGGCCCATACGGGCGTGTGCTGCCTTGCGCTGGCATTTCAAGTGTATGG 860 consensus_5429#2 CGACTACAAACCGGCCCATACGG------------------------------------- 435 consensus_5429#1 TGACTGTTGCAAAGGCTTAACGGGGAGANGGCCTTAAAGTGCAGCCCGCTTTACTTCGCA 609 **** * * **** consensus_5429#0 AGTGNCGGTCCCACTTATGGACGAAATGGATGAGACCACGCGCTGGTACNATATATTCTG 920 consensus_5429#2 ------------------------------------------------------------ consensus_5429#1 ------------------------------------------------------------ consensus_5429#0 CCCGGAACTGACGCGCGAACAGCATTGGGAGATAATG 957 consensus_5429#2 ------------------------------------- consensus_5429#1 ------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||