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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5430#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1480 fasta sequence
[CGAGGCTAATGTAAAGTACAACGAGAAGAAACAAGCTACGCAGTATGGCAGGGGTAATCATACAATGTTCATTATTATTTCATTTAAACTTCTGTACTGACGAGTGAGTGCCTTACCGCCGAGAAAATTTTTTATAAAAGACAAAGGGTTTCGTTAACTCCAGGTCTAAAAACCCCTCAAATTTCGGTCTAAACTCAGGCTGTAAATNTTTGGTGGGACACATTACAACCGCAAAACGGAACAAGGTTCTAGGTGCACATTTTAGGTGTCGGCTTAATGTGCAAACAAGTTATACCGGAACTTTAACACACTGATCCTGGCTAGTCCTCGAGATAAAACAACGGAAACTCCTAAACTCGTTCAACAAACCACGAGGGTGACTTCATCTGAGTTTGTGGATACTTCCATAACATCGCAAAGGAATGATTCTGAAGTCACGACGCCACAAGTGAAAGAAAAAACAGAAAGTACATCATTATATCTGACAGACAAACCACCATATAAAACAATAGATTCTCCAGAATACTCTAGAGAAACGGATGATCCTGGAGTGTCATCTCTACAAGCTACAAAAGGACCAATAAATATATCATTGTATCCGACAGATAAACCATCGTATACGAAAACCAATCATCAGGAGTACACTACAGAATCGGATGATCCTGA-GGTAGCTTCGCCACATCGCATAAACCAATCGATCATTCTAAATACACTAGAGAGAATGATGTCCCAGATGATGTCAGCTTAGCGAACAGAAAAGTTTGGAGATACTTTGCACAAAACTAAAGCATCAAAAGAAAGTCACAATAGGTATGAAAACGGACCTAAGATTTCTACATAATAGCACATTACGAACATTGTATTGATACGAAGGCATCCCTACTAGCAATGAGAATGAAAAAGTGTGCGACTTTCAGGCGAGAGAAGCATGTAGAAGCATGGGGAGACGGTTGGAAATTCGCGGAATTGCTCGGAGGCGCGAGCGTGTTTTGGTTTCTACACAGTTTTTGCACTCACACAATTACACATGTGTGAATGTGTGCGTTCACTTTCAGCCTGCGCGCTCAGTTTGGTTTTCTCGCAGCGGCATGCGGGTATCGGTGTCTCGCTCGCACTAGTGCAGCGAGTGTTCCTCTGTGCGCTCCCCTTCTTGCCACCACACGAAATCGACAGTTCAGCTCAAGCGTTCGCCGTGAAAGGCTGCGCGCGTGTTAGCCTAAGTCCCGGGCGATCGAAGTTTCGCTAAGTGTTGAAGTGTTGTGCACATTGAAATGAAGTGCGCTTTTCTTTCACCATTTATCTTAAATGTGTGATATGCGCTGCTTTATTTCAATATTTATTTTTGCTGTATCGAACATCAACAACGGGATCCACGCAGTTTGACGGCTCTTTGAAATACGACGATTTTTTTATATTAAGAATTTGTGTGATTTTGTGGCAAGATTGTGTGAAGCTATGTGTGAAAATGCCCCTTTATTGC]
[+] EMBL AL933784 [CGAGGCTAATGTAAAGTACAACGAGAAGAAACAAGCTACGCAGTATGGCAGGGGTAATCATACAATGTTCATTATTATTTCATTTAAACTTCTGTACTGACGAGTGAGTGCCTTACCGCCGAGAAAATTTTTTATAAAAGACAAAGGGTTTCGTTAACTCCAGGTCTAAAAACCCCTCAAATTTCGGTCTAAACTCAGGCTGTAAATNTTTGGTGGGACACATTACAACCGCAAAACGGAACAAGGTTCTAGGTGCACATTTTAGGTGTCGGCTTAATGTGCAAACAAGTTATACCGGAACTTTAACACACTGATCCTGGCTAGTCCTCGAGATAAAACAACGGAAACTCCTAAACTCGTTCAACAAACCACGAGGGTGACTTCATCTGAGTTTGTGGATAC ]
[+] EMBL CNS08Q0K [ CGTTCAACAAACCACGAGGGTGACTTCATCTGAGTTTGTGGATACTTCCATAACATCGCAAAGGAATGATTCTGAAGTCACGACGCCACAAGTGAAAGAAAAAACAGAAAGTACATCATTATATCTGACAGACAAACCACCATATAAAACAATAGATTCTCCAGAATACTCTAGAGAAACGGATGATCCTGGAGTGTCATCTCTACAAGCTACAAAAGGACCAATAAATATATCATTGTATCCGACAGATAAACCATCGTATACGAAAACCAATCATCAGGAGTACACTACAGAATCGGATGATCCTGA GGTAGCTTCGCCACATCGCATAAACCAATCGATCATTCTAAATACACTAGAGAGAATGATGTCCCAGATGATGTCAGCTTAGCGAACAGAAAAGTTTGGAGATACTTTGCACAAAACTAAAGCATCAAAAGAAAGTCACAATAGGTATGAAAACGGACCTAAGATTTCTACATAATAGCACATTACGAACATTGTATTGATACGAAGGCATCCCTACTAGCAATGAGAATGAAAAAGTGTGCGACTTTCAGGCGAGAGAAGCATGTAGAAGCATGGGGAGACGGTTGGAAATTCGCGGAATTGCTCGGAGGCGCGAGCGTGTTTTGGTTTCTACACAGTTTTTGCACTCACACAATTACACATGTGTGAATGTGTGCGTTCACTTTCAGCCTGCGCGCTCAGTTTGGTTTTCTCGCAGCGGCATGCGGGTATCGGTGTCTCGCTCGCACTAGTGCAGCGAGTGTTCCTCTGTGCGCTCCCCTTCTTGCCACCACACGAAATCGACAGTTCAGCTCAAGCGTTCGCCGTGAAAGGCTGCGCGCGTGTTAGCCTAAGTCCCGGGCGATCGAAGTTTCGCTAAGTGTTGAAGTGTTGTGCACATTGAAA ]
[-] EMBL CNS08Q0L [ ACGATCGTATACGAAAACCAATCATCAGGAGTACACTACAGAATCGGATGATCCTGAGGGTAG TTCGCCACATCGCATAAACCAATCGATCATTCTAAATACACTAGAGAGAATGATGTCCCAGATGATGTCAGCTTAGCGAACAGAAAAGTTTGGAGATACTTTGCACAAAACTAAAGCATCAAAAGAAAGTCACAATAGGTATGAAAACGGACCTAAGATTTCTACATAATAGCACATTACGAACATTGTATTGATACGAAGGCATCCCTACTAGCAATGAGAATGAAAAAGTGTGCGATTTTCAGGCGAGGG GCATGTAGAAGCATGGGGAGACGGTTGGAAATTCGCGGAATTGCTCGGAGGCGCGAGCGTGTTTTGGTTTCTACACAGTTTTTGAACTCACACAATTACACATGTGTGAATGTGTGCGTTCACTTTCAGCCTGCGCGCTCAGTTTGGTTTTCTCGCAGCGGCATGCGGGTATCGGTGTCTCGCTCGCACTAGTGCAGCGAGTGTTCCTCTGTGCGCTCCCCTTCTTGCCACCACACGAAATCGACAGTTCAGCTCAAGCGTTCGCCGTGAAAGG TGCGCGCGTGTTAGCCTAAGTCCCGGGCGATCGAAGTTTCGCTAAGTGTTGAAGTGTTGTGCACATTGAAATGAAGTGCGCTTTTCTTTCACCATTTATCTTAAATGTGTGATATGCGCTGCTTTATTTCAATATTTATTTTTGCTGTATCGAACATCAACAACGGGATCCACGCAGTTTGACGGCTCTTTGAAATACGACGATTTTTTTATATTAAGAATTTGTGTGATTTTGTGGCAAGATTGTGTGAAGCTATGTGTGAAAATGCCCCTTTATTGC]
consensusID : consensus_5430#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 659 fasta sequence
[TACGCAGTATGGCAGGGTATCATACAATGTTCATTATTATTTCATTAAACTTTGTACTGAGAGTGAGTGCCTTACCCGAGAAAATGTTTTATAAAGACAAAGGTTTCGTTAACTCAGTTAACTCAAATTTCGTTAACTCAGTTAATTTTGTGGACAATTACACCCAAACGAAAAGTTTAGTGCATTTTGTGTCGGCTTATGTGCAAACAAGTTTACCGGAATTAAAACATGATCCTGCTAGTCCTCGAGATAAAACAACGGAAACTCCTAAACTCGTTCAACAAACCACGAGGGTGACTTCATCTGAGTTTGTGGATACTTCCATAACATCGCAAAGGAATGATTCTGAAGTCACGACGCCACAAGTGAAAGAAAAAACAGAAAGTACATCATTATATCTGACAGACAAACCACCATATAAAACAATAGATTCTCTAGAATACTCTAGAGAAACGGATGATCCTGGAGTGTCATCTCTACAAGCTACAAAAGGACCAATAAATATATCATTGCATCCGACAGATGAACCATCGTATACGAAAACCAATCACCAGGAGTACACTACAGAATTGGATGAACCTGAGGTGGCTTCGCTACATCGCATAAACCAATCGGTCATTCTAAATACACTAGAGAGAATGATGTCCCAGATGATGTCA]
[+] EMBL BX624189 [TACGCAGTATGGCAGGGTATCATACAATGTTCATTATTATTTCATTAAACTTTGTACTGAGAGTGAGTGCCTTACCCGAGAAAATGTTTTATAAAGACAAAGGTTTCGTTAACTCAGTTAACTCAAATTTCGTTAACTCAGTTAATTTTGTGGACAATTACACCCAAACGAAAAGTTTAGTGCATTTTGTGTCGGCTTATGTGCAAACAAGTTTACCGGAATTAAAACATGATCCTGCTAGTCCTCGAGATAAAACAACGGAAACTCCTAAACTCGTTCAACAAACCACGAGGGTGACTTCATCTGAGTTTGTGGATACTTCCATAACATCGCAAAGGAATGATTCTGAAGTCACGACGCCACAAGTGAAAGAAAAAACAGAAAGTACATCATTATATCTGACAGACAAACCACCATATAAAACAATAGATTCTCTAGAATACTCTAGAGAAACGGATGATCCTGGAGTGTCATCTCTACAAGCTACAAAAGGACCAATAAATATATCATTGCATCCGACAGATGAACCATCGTATACGAAAACCAATCACCAGGAGTACACTACAGAATTGGATGAACCTGAGGTGGCTTCGCTACATCGCATAAACCAATCGGTCATTCTAAATACACTAGAGAGAATGATGTCCCAGATGATGTCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5430#0 CGAGGCTAATGTAAAGTACAACGAGAAGAAACAAGCTACGCAGTATGGCAGGGGTAATCA 60
consensus_5430#1 ------------------------------------TACGCAGTATGGCAGGGT--ATCA 22
***************** ****
consensus_5430#0 TACAATGTTCATTATTATTTCATTTAAACTTCTGTACTGACGAGTGAGTGCCTTACCGCC 120
consensus_5430#1 TACAATGTTCATTATTATTTCATT-AAACTT-TGTACTGA-GAGTGAGTGCCTTACC--C 77
************************ ****** ******** **************** *
consensus_5430#0 GAGAAAATTTTTTATAAAAGACAAAGGGTTTCGTTAACTCCAGGTCTAAAAACCCCTCAA 180
consensus_5430#1 GAGAAAATGTTTTATAAA-GACAAAGG-TTTCGTTAACTCAG---TTAA------CTCAA 126
******** ********* ******** ************ *** *****
consensus_5430#0 ATTTCGGTCTAAACTCAGGCTGTAAATNTTTGGTGGGACACATTACAACCGCAAAACGGA 240
consensus_5430#1 ATTTCG---TTAACTCA----GTTAATTTT--GTGG-ACA-ATTACACCC---AAACGAA 172
****** * ****** ** *** ** **** *** ****** ** ***** *
consensus_5430#0 ACAAGGTTCTAGGTGCACATTTTAGGTGTCGGCTTAATGTGCAAACAAGTTATACCGGAA 300
consensus_5430#1 AAG----TTTA---GTGCATTTT--GTGTCGGCTTA-TGTGCAAACAAGTT-TACCGGAA 221
* * ** * ****** *********** ************** ********
consensus_5430#0 CTTTAACACACTGATCCTGGCTAGTCCTCGAGATAAAACAACGGAAACTCCTAAACTCGT 360
consensus_5430#1 TTAAAACA---TGATCCTG-CTAGTCCTCGAGATAAAACAACGGAAACTCCTAAACTCGT 277
* **** ******** ****************************************
consensus_5430#0 TCAACAAACCACGAGGGTGACTTCATCTGAGTTTGTGGATACTTCCATAACATCGCAAAG 420
consensus_5430#1 TCAACAAACCACGAGGGTGACTTCATCTGAGTTTGTGGATACTTCCATAACATCGCAAAG 337
************************************************************
consensus_5430#0 GAATGATTCTGAAGTCACGACGCCACAAGTGAAAGAAAAAACAGAAAGTACATCATTATA 480
consensus_5430#1 GAATGATTCTGAAGTCACGACGCCACAAGTGAAAGAAAAAACAGAAAGTACATCATTATA 397
************************************************************
consensus_5430#0 TCTGACAGACAAACCACCATATAAAACAATAGATTCTCCAGAATACTCTAGAGAAACGGA 540
consensus_5430#1 TCTGACAGACAAACCACCATATAAAACAATAGATTCTCTAGAATACTCTAGAGAAACGGA 457
************************************** *********************
consensus_5430#0 TGATCCTGGAGTGTCATCTCTACAAGCTACAAAAGGACCAATAAATATATCATTGTATCC 600
consensus_5430#1 TGATCCTGGAGTGTCATCTCTACAAGCTACAAAAGGACCAATAAATATATCATTGCATCC 517
******************************************************* ****
consensus_5430#0 GACAGATAAACCATCGTATACGAAAACCAATCATCAGGAGTACACTACAGAATCGGATGA 660
consensus_5430#1 GACAGATGAACCATCGTATACGAAAACCAATCACCAGGAGTACACTACAGAATTGGATGA 577
******* ************************* ******************* ******
consensus_5430#0 TCCTGAGGTAGCTTCGCCACATCGCATAAACCAATCGATCATTCTAAATACACTAGAGAG 720
consensus_5430#1 ACCTGAGGTGGCTTCGCTACATCGCATAAACCAATCGGTCATTCTAAATACACTAGAGAG 637
******** ******* ******************* **********************
consensus_5430#0 AATGATGTCCCAGATGATGTCAGCTTAGCGAACAGAAAAGTTTGGAGATACTTTGCACAA 780
consensus_5430#1 AATGATGTCCCAGATGATGTCA-------------------------------------- 659
**********************
consensus_5430#0 AACTAAAGCATCAAAAGAAAGTCACAATAGGTATGAAAACGGACCTAAGATTTCTACATA 840
consensus_5430#1 ------------------------------------------------------------
consensus_5430#0 ATAGCACATTACGAACATTGTATTGATACGAAGGCATCCCTACTAGCAATGAGAATGAAA 900
consensus_5430#1 ------------------------------------------------------------
consensus_5430#0 AAGTGTGCGACTTTCAGGCGAGAGAAGCATGTAGAAGCATGGGGAGACGGTTGGAAATTC 960
consensus_5430#1 ------------------------------------------------------------
consensus_5430#0 GCGGAATTGCTCGGAGGCGCGAGCGTGTTTTGGTTTCTACACAGTTTTTGCACTCACACA 1020
consensus_5430#1 ------------------------------------------------------------
consensus_5430#0 ATTACACATGTGTGAATGTGTGCGTTCACTTTCAGCCTGCGCGCTCAGTTTGGTTTTCTC 1080
consensus_5430#1 ------------------------------------------------------------
consensus_5430#0 GCAGCGGCATGCGGGTATCGGTGTCTCGCTCGCACTAGTGCAGCGAGTGTTCCTCTGTGC 1140
consensus_5430#1 ------------------------------------------------------------
consensus_5430#0 GCTCCCCTTCTTGCCACCACACGAAATCGACAGTTCAGCTCAAGCGTTCGCCGTGAAAGG 1200
consensus_5430#1 ------------------------------------------------------------
consensus_5430#0 CTGCGCGCGTGTTAGCCTAAGTCCCGGGCGATCGAAGTTTCGCTAAGTGTTGAAGTGTTG 1260
consensus_5430#1 ------------------------------------------------------------
consensus_5430#0 TGCACATTGAAATGAAGTGCGCTTTTCTTTCACCATTTATCTTAAATGTGTGATATGCGC 1320
consensus_5430#1 ------------------------------------------------------------
consensus_5430#0 TGCTTTATTTCAATATTTATTTTTGCTGTATCGAACATCAACAACGGGATCCACGCAGTT 1380
consensus_5430#1 ------------------------------------------------------------
consensus_5430#0 TGACGGCTCTTTGAAATACGACGATTTTTTTATATTAAGAATTTGTGTGATTTTGTGGCA 1440
consensus_5430#1 ------------------------------------------------------------
consensus_5430#0 AGATTGTGTGAAGCTATGTGTGAAAATGCCCCTTTATTGC 1480
consensus_5430#1 ----------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||