These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5431#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 800 fasta sequence [CCCAGATCCTGGCATACGCTGATGATATAGACATCATTGGTCTGCGGCTCTCCTATGTAGCAGAAGCCTACCAAGGGATTGAGCAGGCGGCAGAGAACCTCGGATTGCAGATAAACGAGGCAAAGACCAAACTGATGGTGGCAACATCAGCGGACCTACCAATAAATAATCCAAANCTACGTAGGCGTGATGTACAGATAGGTGAACGCACTTTTGAAGTCGTCCCAGAATTCACCTATCTTGGGTCAAAGGTCAGCAACGACAACAGTATGGAAGTTGAGTTGCGCGCAAGGATGCTGGCTGCCAACCGGTCATTCTACAGCCTGAAAAAGCAGTTCACCTCAAAGAACCTGTCGCGACGGACGAAGCTGGGACTATATAGTACCTATATAGTACCAGTACTCACATACGCCTCTGAGACATGGACACTGTCCAAATCTGACGAAGCCCTCTTAGCCGCGTTCGAGAGGAAGATGCTCAGAAGGATACTTGGCCCCGTATGTGTGGAAGGACAATGGAGGAGCCGCTATAATGACGAGCTATACGAGATGTACGGCGACCTTACTGTCGTACAGCGTATTAAGCTCGCCAGGCTCCGGTGGGCTGGCCATGTTGTACGCATGGAAACGGACGANCCAGCCCGTAAAGTCTTTTTAGGCCGTCCACAAAGACAGAGGAGGCGTGGTAGGCCCAAATTGAGGTGGCAAGATGGCGTGGAGGCGTCCGCCATTAAGGCCGGGATAACGGACTGGCAGACGAAGGCGCGAGACCGTGAGCGGTTTCCGACACTCCTGAGGCAG] [+] EMBL BX627397 [CCCAGATCCTGGCATACGCTGATGATATAGACATCATTGGTCTGCGGCTCTCCTATGTAGCAGAAGCCTACCAAGGGATTGAGCAGGCGGCAGAGAACCTCGGATTGCAGATAAACGAGGCAAAGACCAAACTGATGGTGGCAACATCAGCGGACCTACCAATAAATAATCCAAANCTACGTAGGCGTGATGTACAGATAGGTGAACGCACTTTTGAAGTCGTCCCAGAATTCACCTATCTTGGGTCAAAGGTCAGCAACGACAACAGTATGGAAGTTGAGTTGCGCGCAAGGATGCTGGCTGCCAACCGGTCATTCTACAGCCTGAAAAAGCAGTTCACCTCAAAGAACCTGTCGCGACGGACGAAGCTGGGACTATATAGTACCTATATAGTACCAGTACTCACATACGCCTCTGAGACATGGACACTGTCCAAATCTGACGAAGCCCTCTTAGCCGCGTTCGAGAGGAAGATGCTCAGAAGGATACTTGGCCCCGTATGTGTGGAAGGACAATGGAGGAGCCGCTATAATGACGAGCTATACGAGATGTACGGCGACCTTACTGTCGTACAGCGTATTAAGCTCGCCAGGCTCCGGTGGGCTGGCCATGTTGTACGCATGGAAACGGACGANCCAGCCCGTAAAG ] [+] EMBL BX609883 [ AGGATACTTGGCCCCGTATGTGTGGAAGGACAATGGAGGAGCCGCTATAATGACGAGCTATACGAGATGTACGGCGACCTCACTGTCGTACAGCGTATTAAGCTCGCCAGGCTCCGGTGGGCTGGCCATGTTGTACGCATGGAAACGGACGACCCAGCCCGTAAAGTCTTTTTAGGCCGTCCACAAAGACAGAGGAGGCGTGGTAGGCCCAAATTGAGGTGGCAAGATGGCGTGGAGGCGTCCGCCATTAAGGCCGGGATAACGGACTGGCAGACGAAGGCGCGAGACCGTGAGCGGTTTCCGACACTCCTGAGGCAG] consensusID : consensus_5431#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 685 fasta sequence [CCGATTTGTTTCTGGCCGTGGAAGCCGCGCCCGACGAACGCTATCTTTATTCTGGATAGATAATAGATAATAGATAATATAACATTCTTAGAGGCATGTAACATTATAAGATTTATTAGGCATGAAAAAAAAAAACAATTAAAAACAACCGTAACGTGAAGTTGTTGCTGAAAACTGACACCCTAAAGATATCAAAGGAACGTTTTGCACATATCGTTCACGGCCGTTCAGATATGGGAAAGCTCTATGCAAAAATGCTGCCGCGCGAGCTCACATTTGATCAAAAACAACAACGAGTTCATGATTGGCAGCAGTGTTTGGAGCTGTTTAAGCAAAAATAAATCATTTATGCGTCGGCATGTTGCCATAGATGAGACCTAACTTCACGTAACGAAGAAAAAACGTAACGATCAGCTGGCAGGGTTATGGCGTAAGCTTCTGTTTGGGACTCGCAAAGAACTATCTTCATCGACTCTCTTGAGAAAGGAAAGACAATTAACAGTGACTATCACATCGAGTACTCATTGCATCGTACCGGTACTCTGAGACATGGACGCTGTTCAAATCTGACGAAACCCTCTTAGCCGCGTTCGAGAGGAAGATGCTCAGAAGGATTCTTGGCCCAGTATGTGTGAAAGGGCTAGGGAGGAGTTGTTGTAACGACGAGATATACGAGAGCTATGGC] [+] EMBL BM639321 [CCGATTTGTTTCTGGCCGTGGAAGCCGCGCCCGACGAACGCTATCTTTATTCTGGATAGATAATAGATAATAGATAATATAACATTCTTAGAGGCATGTAACATTATAAGATTTATTAGGCATGAAAAAAAAAAACAATTAAAAACAACCGTAACGTGAAGTTGTTGCTGAAAACTGACACCCTAAAGATATCAAAGGAACGTTTTGCACATATCGTTCACGGCCGTTCAGATATGGGAAAGCTCTATGCAAAAATGCTGCCGCGCGAGCTCACATTTGATCAAAAACAACAACGAGTTCATGATTGGCAGCAGTGTTTGGAGCTGTTTAAGCAAAAATAAATCATTTATGCGTCGGCATGTTGCCATAGATGAGACCTAACTTCACGTAACGAAGAAAAAACGTAACGATCAGCTGGCAGGGTTATGGCGTAAGCTTCTGTTTGGGACTCGCAAAGAACTATCTTCATCGACTCTCTTGAGAAAGGAAAGACAATTAACAGTGACTATCACATCGAGTACTCATTGCATCGTACCGGTACTCTGAGACATGGACGCTGTTCAAATCTGACGAAACCCTCTTAGCCGCGTTCGAGAGGAAGATGCTCAGAAGGATTCTTGGCCCAGTATGTGTGAAAGGGCTAGGGAGGAGTTGTTGTAACGACGAGATATACGAGAGCTATGGC] consensusID : consensus_5431#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 219 fasta sequence [AGGCAGAATCGCCACGAGNTGTANCGACGGACGAAGCTGGGACTCTATAGTACTATATAGTTCCGGTACTCACATACGCCTCTGAGACATGGAGACTGTCCAAATCTGACGAAGCCCTCGTGTAGGCCGCGTTCGAGAGGAAGGATGCTCAGAAGAGATACTTGGATCCCGGTAATGGTGTGGAAGGACAATGGAGGAGCCGGTAGTAGAGTGACGAGG] [+] EMBL BX468017 [AGGCAGAATCGCCACGAGNTGTANCGACGGACGAAGCTGGGACTCTATAGTACTATATAGTTCCGGTACTCACATACGCCTCTGAGACATGGAGACTGTCCAAATCTGACGAAGCCCTCGTGTAGGCCGCGTTCGAGAGGAAGGATGCTCAGAAGAGATACTTGGATCCCGGTAATGGTGTGGAAGGACAATGGAGGAGCCGGTAGTAGAGTGACGAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5431#0 CCCAGATCCTGGCATACGCTGATGATATAGACATCATTGGTCTGCGGCTCTCCTATGTAG 60 consensus_5431#2 ------------------------------------------------------------ consensus_5431#1 ------------------------------------CCGATTTGTTTCTGGCCGTGGAAG 24 consensus_5431#0 CAGAAGCCTACCAAGGGATTGAGCAGGC--GGCAGAGAACCTCGGATTGCAGATAAACGA 118 consensus_5431#2 ------------------------------------------------------------ consensus_5431#1 CCGCGCCCGACGAACGCTATCTTTATTCTGGATAGATAATAGATAATAGATAATATAACA 84 consensus_5431#0 GGCAAAGACCAAACTGATGGTGGCAACATCAGCGGACCT---ACCAATAAATAATCCAAA 175 consensus_5431#2 ------------------------------------------------------------ consensus_5431#1 TTCTTAGAGGCATGTAACATTATAAGATTTATTAGGCATGAAAAAAAAAAACAATTAAAA 144 consensus_5431#0 NCTACGTAGGCGTGATGTACAGATAGGTGAACGCACTTTTGAAGTCGTCCCAGAATTCAC 235 consensus_5431#2 ------------------------------------------------------------ consensus_5431#1 ACAACCGTAACGTGAAGTTGTTGCTGAAAACTGACACCCTAAAGATATCAAAGGAAC--- 201 consensus_5431#0 CTATCTTGGGTCAAAGGTCAGCAACGACAACAGTATGGAAGTTGAGTTGCGCGCAAGGAT 295 consensus_5431#2 ------------------------------------------------------------ consensus_5431#1 --GTTTTGCACATATCGTTCACGGCCGTTCAGATATGGGA---AAGCTCTATGCAAAAAT 256 consensus_5431#0 GCTGGCTGCCAACCGGTCATTCTACAGCCTGAAAAAGCAGTTCACCTCAAAGAACCTGTC 355 consensus_5431#2 ----------------------------------AGGCAG--AATCGCCACGAGN-TGTA 23 consensus_5431#1 GCTGCCGCGCGAGCTCACATTTGA---TCAAAAACAACAA--CGAGTTCATGATT-GGCA 310 ** * ** * consensus_5431#0 GCGACGGACGAAGCTGGGACTATATAGTACCTATATAGTACCAGTACTCACATACGCCTC 415 consensus_5431#2 NCGACGGACGAAGCTGGGACTCTATAGTAC-TATATAGTTCCGGTACTCACATACGCCTC 82 consensus_5431#1 GCAGTGTTTGGAGCTG----TTTA-AGCAAAAATAAATCATTTATGCGTCGGCATGTTGC 365 * * * ***** * ** ** * *** * * * * * * consensus_5431#0 TGAGACATGGACACTGTCCAAATCTGACGAAGCCCTCTTA---GCCGCGTTCGAGAGGAA 472 consensus_5431#2 TGAGACATGGAGACTGTCCAAATCTGACGAAGCCCTCGTGTAGGCCGCGTTCGAGAGGAA 142 consensus_5431#1 C-ATAGATGAGACCTAACTTCACGTAACGAAGAAAAAAC----GTAACGATCAGCTGGCA 420 * * *** ** * * * ****** * ** ** ** * consensus_5431#0 G-ATGCTCAGAAG-GATACTTGG--CCCCGTAT--GTGTGGAAGGACAATGGAGGAGCCG 526 consensus_5431#2 GGATGCTCAGAAGAGATACTTGGATCCCGGTAATGGTGTGGAAGGACAATGGAGGAGCCG 202 consensus_5431#1 G--GGTTATGGCGTAAGCTTCTG--TTTGGGACTCGCAAAGAACTATCTTCATCGACTCT 476 * * * * * * * * * * * *** * * ** * consensus_5431#0 CTAT---AATGACGAGCTATACGAGATGTACGGCGACCTTACTGTCGTACAGCGTATTAA 583 consensus_5431#2 GTAGTAGAGTGACGAGG------------------------------------------- 219 consensus_5431#1 CT-------TGAGAAAGGAAAGACAATTAACAGTGACTATCACATCGAGTACTCATTGCA 529 * *** * consensus_5431#0 GCTCGCCAGGCTCCGGTGGGCTGGCCATGTTGTACGCATGGAAACGGACGANCCAGCCCG 643 consensus_5431#2 ------------------------------------------------------------ consensus_5431#1 TCGTACCGGTACTCTGAGACATGG--ACGCTGTTCAAATCTGACGAAACCCTCTTAGCCG 587 consensus_5431#0 TAAAGTCTTTTTAGGCCGTCCACAAAGACAGAGGAGGCGTGGTAGGCCCAAATTGAGGTG 703 consensus_5431#2 ------------------------------------------------------------ consensus_5431#1 C---GTTCGAGAGGAAGATGCTCAGAAGGATTCTTGGCCCAGTATGTGTGAAA-GGGCTA 643 consensus_5431#0 GCAAGATGGCGTGGAGGCGTCCGCCATTAAGGCCGGGATAACGGACTGGCAGACGAAGGC 763 consensus_5431#2 ------------------------------------------------------------ consensus_5431#1 GGGAGGAGTTGTTGTAACGACGAGATATACGAGAGCTATGGC------------------ 685 consensus_5431#0 GCGAGACCGTGAGCGGTTTCCGACACTCCTGAGGCAG 800 consensus_5431#2 ------------------------------------- consensus_5431#1 ------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||