These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5434#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1545 fasta sequence [CCGCGTGGTAACATCGGTCGTCAGTTTGGGCGTGCTGCTTGCGACGCTCTGTCTGTGCGTGTACCTGCTCGTGGTGCGTAAGTATTCCTTCTGGCGATCGTACCATGTACCGTACGTCGAGCCGGAGCTGCCGTACGGCAACTTCAAGGAGATGGGAAAATCAATCCATCCAGCTCACCTCAGCCAGCGGTTTTACGAGCAGTACAAAGCAGTGCCTGGAAGTCCCGGTTTTGTGGGGCTGTACATCTTTCTCAATCCGGTGCTGCTCGTTACGGATCTGAAGCTAGCGAAGCGCATTCTGATCGAAGACTTCCATCACTTCCCCGACCGGGGTGTGTACTTCAACGAGAAGGATGATCCTCTGTCGGCGCATCTCTTCGCGATCGAGGGGCAACGGTGGAAGGACCTGAGGGCGAAGATCACACCCACCTTCACAAGTGGGCGTATGAAGGCGGCATTCCCACTAGTGCTCGGCATTGCCGAGCAGTTCTGTGGCTTTCTGCGCGAACAGTACGCGTCGGACGATGTGGTGGAGGTACGCGATCTTATGGCACGCTTCACGACGGACGTGATCGGTTCGTACGCGTTCGGGCTGGAGTTGAACAGCTTCCGGGATCCGCAGAACGAGTTCCGGCGCATCGGGCGCAAACACTTCGACACACCGCGCAACCATCCGCTCAAAGTGTTTATCATGAAAACGTTCCGCGGGCTGGCGAACCGGCTCGGGCTGAAACTGCTGCACGACGATGTGGCCGCCTTCTTCCAGAGCGTGATCCGCGAGACGATCCACCATCGGGAGGGGCACGGTGTGCGGCGGAACGATTTTCTCGACCTGCTGATAAGACTGAAGAACACGGGCTCGCTGGAGGGCTCGCACGAG-ATAGTGGGCCGGCTTTCGGGTGACGAAATTGCGGCACAAGCGTTCATCTTCTTTACCGCCGGCTTCGAGACGTCGTCCAGTGCGATGACCTACACGCTGTACGAGCTGGCGCTAAATCAGGAAGCTCAGCGGAAGGCCCGGGAGTGTGTGCTCGAGGCGCTCGCGAAGCATGACGGAGTTGTGTCGTACGAATCGTCCAAAAATATGCTATATTTAGATCAGTGCATCTATGAAACTCTTCGCAAGTACCCGCCGGTGGCAATATTGGAGCGAATCGTCACAA-A-ACCATACCGCATTCCGGACACCAGCGTAACACTTCACCCGGGGATGAAGATCATGATTCCGGCGTACGCGATTCACCACGATCCGGACATCTATCCCGAGCCGGCCACGTACGACCCGGATCGGTTCACACCGGAACGGA-TGGCACGGCGTGATCCCTGTGCCTATCTGCCG-TTCGGGGAGGGTCCCCGGATATGCATTGGGCTGCGGTTTGGCATGATGCAGGCACGGATCGGGCTGGCACTGCTGCTGAAACACTTCCAAGTGCTGCCCTGTAAGGAGACGGACGTGCCCTTAACCTACTCCCCGAGGGCGTTCGTGCTGACACCGGTTAATGGCGTGCGGTTGCGGTTGGTTAAGTACGATGCGCACGGTGCAGCAGA] [+] EMBL BM587970 [CCGCGTGGTAACATCGGTCGTCAGTTTGGGCGTGCTGCTTGCGACGCTCTGTCTGTGCGTGTACCTGCTCGTGGTGCGTAAGTATTCCTTCTGGCGATCGTACCATGTACCGTACGTCGAGCCGGAGCTGCCGTACGGCAACTTCAAGGAGATGGGAAAATCAATCCATCCAGCTCACCTCAGCCAGCGGTTTTACGAGCAGTACAAAGCAGTGCCTGGAAGTCCCGGTTTTGTGGGGCTGTACATCTTTCTCAATCCGGTGCTGCTCGTTACGGATCTGAAGCTAGCGAAGCGCATTCTGATCGAAGACTTCCATCACTTCCCCGACCGGGGTGTGTACTTCAACGAGAAGGATGATCCTCTGTCGGCGCATCTCTTCGCGATCGAGGGGCAACGGTGGAAGGACCTGAGGGCGAAGATCACACCCACCTTCACAAGTGGGCGTATGAAGGCGGCATTCCCACTAGTGCTCGGCATTGCCGAGCAGTTCTGTGGCTTTCTGCGCGAACAGTACGCGTCGGACGATGTGGTGGAGGTACGCGATCTTATGGCACGCTTCACGACGGACGTGATCGGTTCGTACGCGTTCGGGCTGGAGTTGAACAGCTTCCGGGATCCGCAGAACGAGTTCCGGCGCATC ] [+] EMBL AY193728 [ GTGGTAACATCGGTCATCAGTTTGGGCGTGCTGCTTGCAACGCTCTGTCTGTGCGTGTACCTGCTCGTGGTGCGTAAGTATTCCTTCTGGCGATCGTACCATGTACCGTACGTCGAGCCGGAGCTGCCGTACGGCAACTTCAAGGAGATGGGCAAATCGATCCATCCGGCTCACCTCAGCCAACGGTTTTACGAGCAATACAAAGCAGTGCCTGGTAGTCCCGGTTTTGTGGGGCTGTACATCTTTCTCAACCCGGTGCTGCTCGTTACGGATCTGAAGCTAGCGAAACGCATTCTGATCGAAGACTTCCATCACTTCCCCGACCGGGGTGTGTACTTCAACGAGAAGGATGATCCTCTGTCGGCGCATCTCTTCGCGATCGAGGGGCAACGGTGGAAGGACCTGAGGGCGAAGATCACACCCACCTTCACAAGTGGGCGTATGAAGGCGGCATTCCCACTAGTGCTCGGCATTGCCGAGCAGTTCTGTGGCTTTCTGCGCGAACAGTACACGTCGGACGATGTGGTGGAGGTACGCGATCTTATGGCACGCTTCACGACGGACGTGATCGGTTCGTACGCGTTCGGGCTGGAGTTGAACAGCTTCCGGGATCCGCAGAACGAGTTCCGGCGCATCGGGCGCAAACACTTCGACACACCGCGCAACCATCCGCTCAAAGTGTTTATCATGAAAACGTTCCGCGGGCTGGCGAACCGGCTCGGGCTGAAACTGCTGCACGACGATGTGGCCGCCTTCTTCCAGAGCGTGATCCGCGAGACGATCCACCATCGGGAGGGGCACGGTGTGCGGCGGAACGATTTTCTCGACCTGCTGATAAGACTGAAGAACACGGGCTCGCTGGAGGGCTCGCACGAG ATAGTGGGCCGGCTTTCGGGTGACGAAATTGCGGCACAAGCGTTCATCTTCTTTACCGCCGGCTTCGAGACGTCGTCCAGTGCGATGACCTACACGCTGTACGAGCTGGCGCTAAATCAGGAAGCTCAGCGGAAGGCCCGGGAGTGTGTGCTCGAGGCGCTCGCGAAGCATGACGGAGTTGTGTCGTACGAATCGTCCAAAAATATGCTATATTTAGATCAGTGCATCTATGAAACTCTTCGCAAGTACCCGCCGGTGGCAATATTGGAGCGAATCGTCACAA A ACCATACCGCATTCCGGACACCAGCGTAACACTTCACCCGGGGATGAAGATCATGATTCCGGCGTACGCGATTCACCACGATCCGGACATCTATCCCGAGCCGGCCACGTACGACCCGGATCGGTTCACACCGGAACGGA TGGCACGGCGTGATCCCTGTGCCTATCTGCCG TTCGGGGAGGGTCCCCGGATATGCATTGGGCTGCGGTTTGGCATGATGCAGGCACGGATCGGGCTGGCACTGCTGCTGAAACACTTCCAAGTGCTGCCCTGTAAGGAGACGGACGTGCCCTTAACCTACTCCCCGAGGGCGTTCGTGCTGACACCGGTTAATGGCGTGCGGTTGCGGTTGGTTAAGTACGATGCGCACGGTGCAGCAGA] [+] EMBL AL934532 [ cgatntaCGCTGGAGGGCTCGCACGAGCATAGTGGGCCGGCTTTCGGGTGACGAAATTGCGGCACAAGCGTTCATCTTCTTTACCGCCGGCTTCGAGACGTCGTCCAGTGCGATGACCTACACGCTGTACGAGCTGGCGCTAAATCAGGAAGCTCAGCGGAAGGCCCGGGAGTGTGTGCTCGAGGCGCTCGCGAAGCATGACGGAGTTGTGTCGTACGAATCGTCCAAAAATATGCTATATTTAGATCAGTGCATCTATGAAACTCTTCGCAAGTACCCGCCGGTGGCAATATTGGAGCGAATCGTCACAACACACCATACCGCATTCCGGACACCAGCGTAACACTTCACCCGGGGATGAAGATCATGATTCCGGCGTACGCGATTCACCACGATCCGGACATCTATCCCGAGCCGGCCACGTACGACCCGGATCGGTTCACACCGGAACGGACTGGCACGGCGTGATCCCTGTGCCTATCTGCCGCTTCGGGGAGGGTCCCCGGATATGCATTGGGCTGCGGTTTGGCATGATGCAGGCACGGATCGGGCTGGCACTGCTGCTGAAACACTTCCAAGT ] consensusID : consensus_5434#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 618 fasta sequence [CCGCAAGCGTTCATCTTCTTTACCGCCGGCTTCGAGACGTCGTCCAGTGCGATGACCTACACGATGTGGCCGCCTTCTTCCAGAGCGTGATCCGCGAGACGATCCACCATCGGGAGGGGCACGGTGTGCGGCGGAACGATTTTCTCGACCTGCTGATAAGACTGAAGAACACGGGCTCGCTGGAGGGCTCGCACGAGATAGTGGGCCGGCTTTCGGGTGACGAAATTGCGGCACAAGCGTTCATCTTCTTTACCGCCGGCTTCGAGACGTCGTCCAGTGCGATGACCTACACGCTGTACGAGCTGGCGCTAAATCAGGAAGCACAGCGGAAGGCCCGGGAGTGTGTGCTGGATGCGCTCGCGAAGCATGACGGAGTTGTGTCGTACGAATCGTCCAAAAATATGCTATATTTAGATCAGTGCATCTATGAAACTCTTCGCAAGTACCCGCCGGTGGCAATATTGGAGCGAATCGTCACCAAACCGTACCGCATTCCGGACACCAGCGTAACACTTCACCCGGGGATGAAGATCATGATTCCGGCGTACGCGATTCACCACGATCCGGACATCTATCCCGAGCCGGCCACGTACGACCCGGATCGGTTCACACCGGGAA] [+] EMBL BM625810 [CCGCAAGCGTTCATCTTCTTTACCGCCGGCTTCGAGACGTCGTCCAGTGCGATGACCTACACGATGTGGCCGCCTTCTTCCAGAGCGTGATCCGCGAGACGATCCACCATCGGGAGGGGCACGGTGTGCGGCGGAACGATTTTCTCGACCTGCTGATAAGACTGAAGAACACGGGCTCGCTGGAGGGCTCGCACGAGATAGTGGGCCGGCTTTCGGGTGACGAAATTGCGGCACAAGCGTTCATCTTCTTTACCGCCGGCTTCGAGACGTCGTCCAGTGCGATGACCTACACGCTGTACGAGCTGGCGCTAAATCAGGAAGCACAGCGGAAGGCCCGGGAGTGTGTGCTGGATGCGCTCGCGAAGCATGACGGAGTTGTGTCGTACGAATCGTCCAAAAATATGCTATATTTAGATCAGTGCATCTATGAAACTCTTCGCAAGTACCCGCCGGTGGCAATATTGGAGCGAATCGTCACCAAACCGTACCGCATTCCGGACACCAGCGTAACACTTCACCCGGGGATGAAGATCATGATTCCGGCGTACGCGATTCACCACGATCCGGACATCTATCCCGAGCCGGCCACGTACGACCCGGATCGGTTCACACCGGGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5434#0 CCGCGTGGTAACATCGGTCGTCAGTTTGGGCGTGCTGCTTGCGACGCTCTGTCTGTGCGT 60 consensus_5434#1 ------------------------------------------------------------ consensus_5434#0 GTACCTGCTCGTGGTGCGTAAGTATTCCTTCTGGCGATCGTACCATGTACCGTACGTCGA 120 consensus_5434#1 ------------------------------------------------------------ consensus_5434#0 GCCGGAGCTGCCGTACGGCAACTTCAAGGAGATGGGAAAATCAATCCATCCAGCTCACCT 180 consensus_5434#1 ------------------------------------------------------------ consensus_5434#0 CAGCCAGCGGTTTTACGAGCAGTACAAAGCAGTGCCTGGAAGTCCCGGTTTTGTGGGGCT 240 consensus_5434#1 ------------------------------------------------------------ consensus_5434#0 GTACATCTTTCTCAATCCGGTGCTGCTCGTTACGGATCTGAAGCTAGCGAAGCGCATTCT 300 consensus_5434#1 ------------------------------------------------------------ consensus_5434#0 GATCGAAGACTTCCATCACTTCCCCGACCGGGGTGTGTACTTCAACGAGAAGGATGATCC 360 consensus_5434#1 ------------------------------------------------------------ consensus_5434#0 TCTGTCGGCGCATCTCTTCGCGATCGAGGGGCAACGGTGGAAGGACCTGAGGGCGAAGAT 420 consensus_5434#1 ------------------------------------------------------------ consensus_5434#0 CACACCCACCTTCACAAGTGGGCGTATGAAGGCGGCATTCCCACTAGTGCTCGGCATTGC 480 consensus_5434#1 ------------------------------------------------------------ consensus_5434#0 CGAGCAGTTCTGTGGCTTTCTGCGCGAACAGTACGCGTCGGACGATGTGGTGGAGGTACG 540 consensus_5434#1 ------------------------------------------------------------ consensus_5434#0 CGATCTTATGGCACGCTTCACGACGGACGTGATCGGTTCGTACGCGTTCGGGCTGGAGTT 600 consensus_5434#1 ------------------------------------------------------------ consensus_5434#0 GAACAGCTTCCGGGATCCGCAGAACGAGTTCCGGCGCATCGGGCGCAAACACTTCGACAC 660 consensus_5434#1 ------------------------------------------------------------ consensus_5434#0 ACCGCGCAACCATCCGCTCAAAGTGTTTATCATGAAAACGTTCCGCGGGCTGGCGAACCG 720 consensus_5434#1 ----------------CCGCAAGCGTTCATCTTC----TTTACCGCCGGCTT-CGAGACG 39 * *** *** *** * * **** **** *** ** consensus_5434#0 GCTCGGGCTGAAACTGCTGCACGACGATGTGGCCGCCTTCTTCCAGAGCGTGATCCGCGA 780 consensus_5434#1 TCGTCCAGTGCGA-TGACCTAC-ACGATGTGGCCGCCTTCTTCCAGAGCGTGATCCGCGA 97 * ** * ** ** ************************************* consensus_5434#0 GACGATCCACCATCGGGAGGGGCACGGTGTGCGGCGGAACGATTTTCTCGACCTGCTGAT 840 consensus_5434#1 GACGATCCACCATCGGGAGGGGCACGGTGTGCGGCGGAACGATTTTCTCGACCTGCTGAT 157 ************************************************************ consensus_5434#0 AAGACTGAAGAACACGGGCTCGCTGGAGGGCTCGCACGAGATAGTGGGCCGGCTTTCGGG 900 consensus_5434#1 AAGACTGAAGAACACGGGCTCGCTGGAGGGCTCGCACGAGATAGTGGGCCGGCTTTCGGG 217 ************************************************************ consensus_5434#0 TGACGAAATTGCGGCACAAGCGTTCATCTTCTTTACCGCCGGCTTCGAGACGTCGTCCAG 960 consensus_5434#1 TGACGAAATTGCGGCACAAGCGTTCATCTTCTTTACCGCCGGCTTCGAGACGTCGTCCAG 277 ************************************************************ consensus_5434#0 TGCGATGACCTACACGCTGTACGAGCTGGCGCTAAATCAGGAAGCTCAGCGGAAGGCCCG 1020 consensus_5434#1 TGCGATGACCTACACGCTGTACGAGCTGGCGCTAAATCAGGAAGCACAGCGGAAGGCCCG 337 ********************************************* ************** consensus_5434#0 GGAGTGTGTGCTCGAGGCGCTCGCGAAGCATGACGGAGTTGTGTCGTACGAATCGTCCAA 1080 consensus_5434#1 GGAGTGTGTGCTGGATGCGCTCGCGAAGCATGACGGAGTTGTGTCGTACGAATCGTCCAA 397 ************ ** ******************************************** consensus_5434#0 AAATATGCTATATTTAGATCAGTGCATCTATGAAACTCTTCGCAAGTACCCGCCGGTGGC 1140 consensus_5434#1 AAATATGCTATATTTAGATCAGTGCATCTATGAAACTCTTCGCAAGTACCCGCCGGTGGC 457 ************************************************************ consensus_5434#0 AATATTGGAGCGAATCGTCACAAAACCATACCGCATTCCGGACACCAGCGTAACACTTCA 1200 consensus_5434#1 AATATTGGAGCGAATCGTCACCAAACCGTACCGCATTCCGGACACCAGCGTAACACTTCA 517 ********************* ***** ******************************** consensus_5434#0 CCCGGGGATGAAGATCATGATTCCGGCGTACGCGATTCACCACGATCCGGACATCTATCC 1260 consensus_5434#1 CCCGGGGATGAAGATCATGATTCCGGCGTACGCGATTCACCACGATCCGGACATCTATCC 577 ************************************************************ consensus_5434#0 CGAGCCGGCCACGTACGACCCGGATCGGTTCACACCGGAACGGATGGCACGGCGTGATCC 1320 consensus_5434#1 CGAGCCGGCCACGTACGACCCGGATCGGTTCACACCGGGAA------------------- 618 ************************************** * consensus_5434#0 CTGTGCCTATCTGCCGTTCGGGGAGGGTCCCCGGATATGCATTGGGCTGCGGTTTGGCAT 1380 consensus_5434#1 ------------------------------------------------------------ consensus_5434#0 GATGCAGGCACGGATCGGGCTGGCACTGCTGCTGAAACACTTCCAAGTGCTGCCCTGTAA 1440 consensus_5434#1 ------------------------------------------------------------ consensus_5434#0 GGAGACGGACGTGCCCTTAACCTACTCCCCGAGGGCGTTCGTGCTGACACCGGTTAATGG 1500 consensus_5434#1 ------------------------------------------------------------ consensus_5434#0 CGTGCGGTTGCGGTTGGTTAAGTACGATGCGCACGGTGCAGCAGA 1545 consensus_5434#1 --------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||