These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5438#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 901 fasta sequence [AATCGCCANGAGGTANATCAGCGTGGACCGTGGATCGTA-NTTGCCCTGTTCGTCAAGCCGTCGGTTTCCCTGTCAAGTGTTCGAGTGTCGAGTCCTACTACGAAGAAATGCGTTCGTTCGCCGTATTTGCGGTGGTGTCGCTAGTGCTGATGGCAGGCGGCACCCAATCGCTGCCCCGATCGGCCGCCGAAATTGCCACGGACATCTACCGCACCTGCCTTGCCAGTGAGCATGGGCTGAAGTGTGCCAAAGCGAAGGCCCTCGCCTGGATGGCGAATGTGGCCGAGCAGGACGAGATTCCGATCACCGAGTCAATCACGATCGTGCGCACCGGTACGGAGGAGCCGGAACAGCCCGCGGACACCGAGCAGCAACGTAGCGCTGGCGGAGTGCGACTTCTGAACAGTATCGACAGCTTCCTCTCGACACACGCCCTCAAAATGACCCCGCCTGCTGTGCTTCAGTCCGAGGAAGCTCGTGCCTACATTCCCGACACGTTGCTGCAGGGAGGACTCGCCGACAATCTGATTGTGCCATTGACGGAAGGAAACGTTGCGGAAGGACGTGGTTTTGTGAAGAAAGTCATGATTCCCTTCCTGCTGGGTATCAAGTTCAAGTCGACCGTCCTGGTCCCGATGGCGCTCGCTCTCATCGCCCTCAAGACCTGGAANGGCATGACTCTTGGTCTGCTGTCGCTGGTGCTGTCCGGTGCGATGATGATCTTCAAGTTCGCCAAGCCAAAGATCGTCAACTACGAGGTGGTGCACTATCCGCCACCGCACCATGTGCACCACGTCGACCATCACATCGATCATCACGCACCGCACGTGCACTGGGACGCTCCGCCCGCGTGGAAAGAAACGATCNATGGACGCCCACGAACAGGCGTACACCGGGCAGC] [+] EMBL BX466163 [AATCGCCANGAGGTANATCAGCGTGGACCGTGGATCGTACNTTGCCCTGTTCGTCAAGCCGTCGGTTTCCCTGTCAAGTGTTCGAGTGTCGAGTCCTACTACGAAGAAATGCGTTCGTTCGCCGTATTTGCGGTGGTGTCGCTAGTGCTGATTGCAAGCGGCACCCAATCGCTG CCCGATCGGCCGCCGAAGTTGCCACGGACATCTACCGGACCTGCCTTGCCAGTGAGCATGGGCTGAAGTGTGCCAAAGCGAAGGCCCTCGCCTGGATGGCGA ] [+] EMBL BX626532 [ CGTGGATCGTA GTTGCCCTGTTCGTCAAGCCGTCGGTTTCCCTGTCAAGTGTTCGAGTGTCGAGTCCTACTACGAAGAAATGCGTTCGTTCGCCGTATTTGCGGTGGTGTCGCTAGTGCTGATGGCNGGCGGCACCCAATCGCTGCCCCGATCGGCCGCCGAAATTGCCACGGACATCTACCGCACCTGCCTTGCCAGTGAGCATGGGCTGAAGTGTGCCAAAGCGAAGGCCCTCGCCTGGATGGCGAATGTGGCCGAGCAGGACGAGATTCCGATCACCGAGTCAATCACGATCGTGCGCACCGGTACGGAGGAGCCGGAACAGCCCGCGGACACCGAGCAGCAACGTAGCGCTGGCGGAGTGCGACTTCTGAACAGTATCGACAGCTTCCTCTCGACACACGCCCTCAAAATGACCCCGCCTGCTGTGCTTCAGTCCGAGGAAGCTCGTGCCTACATTCCCGACACGTTGCTGCAGGGAGGACTCGCCGACAATCTGATTGTGCCATTGACGGAAGGAAACGTTGCGGAAGGACGTGGTTTTGTGAAGAAAGTCATGATTCCCTTCCTGCTGGGTATCAAGTTCAAGTCGACCGTCCTGGTCCCGATGGCGCTCGCTCTCATCGCCCTCAAGACCTGGAANGGCATGACTCTTGGTCTGCTGTCGCTGGTGCTGTCCGGTGCGATGATGATCTTCAAGTTCGCCAAGCCAAAGA ] [+] EMBL BX623182 [ GTGTCGCTAGTGCTGATGGCAGGCGGCACCCAATCGCTGCCCCGATCGGCCGCCGAAATTGCCACGGACATCTACCGCACCTGCCTTGCCAGTGAGCATGGGCTGAAGTGTGCCAAAGCGAAGGCCCTCGCCTGGATGGCGAATGTGGCCGAGCAGGACGAGATTCCGATCACCGAGTCAATCACGATCGTGCGCACCGGTACGGAGGAGCCGGAACAGCCCGCGGACACCGAGCAGCAACGTAGCGCTGGCGGAGTGCGACTTCTGAACAGTATCGACAGCTTCCTCTCGACACACGCCCTCAAAATGACCCCGCCTGCTGTGCTTCAGTCCGAGGAAGCTCGTGCCTACATTCCCGACACGTTGCTGCAGGGAGGACTCGCCGACAATCTGATTGTGCCATTGACGGAAGGAAACGTTGCGGAAGGACGTGGTTTTGTGAAGAAAGTCATGATTCCCTTCCTGCTGGGTATCAAGTTCAAGTCGACCGTCCTGGTCCCGATGGCGCTCGCTCTCATCGCCCTCAAGACCTGGAAGGCCATGACTCTTGGTCTGCTGTCGCTGGTGCTGTCCGGTGCGATGATGATCTTCAAGTTCGCCAAGCCAAAGATCGTCAACTACGAGGTGGTGCACTATCCGCCACCGCACCATGTGCACCACGTCGACCATCACATCGATCATCACGCACCGCACGTGCACTGGGACGCTCCGCCCGCGTGGAAAGAAACGATCNATGGACGCCCACGAACAGGCGTACACCGGGCAGC] consensusID : consensus_5438#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 663 fasta sequence [GAATTGCCACGAGGTAAGCAGTCAGCGTGGACGTGGATTGTAGTTGCCCTGTTCGTCAAGCCGTCGGTTTCCCTGTCAAGTGTTCGAGTGTCGAGTCTACTACGAAGAAATGCGTTCGTTCGCCGTATTTGCGGTGGTGTCGCTAGTGCTGATGGCAGGCGGCACCCAATCGCTGCCCCGATCGGCCGCGAAATTGCCACGGACATCTACCGCACCTGCCTTGCCAGTGAGCATGGGCTGAAGTGTGCCAAAGCGAAGGCCCTCGCCTGGATGGCGAATGTGGCCGAGCAGGACGAGATTCCGATCACCGAGTCAATCACGATCGTGCGCACCGGTACGGAGGAGCCGGAACAGCCCGCGGACACCGAGCAGCAACGTAGCGCTGGCGGAGTGCGACTTCTGAACAGTATCGACAGCTTCCTCTCGACACACGCCCTCAAANATGACCCCGCCTGCTGTGCTTCAGTCCGAGNGGANANGCCTCGCTGCCTTACATTTCCCCGACCACCGTCTGCTGCGCGCGGGCAGGCACTCGCCCGACCNATTTCCTGCANTCGCTGCCCACNTGNACGCGGACACGCGGNANCACGCTNNGCGGNGCNACAGCGACGGCTGGCCTCCCCGCTGACANCACNCGCTCCTTGNCTTTCCCCTTTCCCTGCC] [+] EMBL AL934626 [GAATTGCCACGAGGTAAGCAGTCAGCGTGGACGTGGATTGTAGTTGCCCTGTTCGTCAAGCCGTCGGTTTCCCTGTCAAGTGTTCGAGTGTCGAGTCTACTACGAAGAAATGCGTTCGTTCGCCGTATTTGCGGTGGTGTCGCTAGTGCTGATGGCAGGCGGCACCCAATCGCTGCCCCGATCGGCCGCGAAATTGCCACGGACATCTACCGCACCTGCCTTGCCAGTGAGCATGGGCTGAAGTGTGCCAAAGCGAAGGCCCTCGCCTGGATGGCGAATGTGGCCGAGCAGGACGAGATTCCGATCACCGAGTCAATCACGATCGTGCGCACCGGTACGGAGGAGCCGGAACAGCCCGCGGACACCGAGCAGCAACGTAGCGCTGGCGGAGTGCGACTTCTGAACAGTATCGACAGCTTCCTCTCGACACACGCCCTCAAANATGACCCCGCCTGCTGTGCTTCAGTCCGAGNGGANANGCCTCGCTGCCTTACATTTCCCCGACCACCGTCTGCTGCGCGCGGGCAGGCACTCGCCCGACCNATTTCCTGCANTCGCTGCCCACNTGNACGCGGACACGCGGNANCACGCTNNGCGGNGCNACAGCGACGGCTGGCCTCCCCGCTGACANCACNCGCTCCTTGNCTTTCCCCTTTCCCTGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5438#0 -AATCGCCANGAGGTANA---TCAGCGTGGACCGTGGATCGTANTTGCCCTGTTCGTCAA 56 consensus_5438#1 GAATTGCCACGAGGTAAGCAGTCAGCGTGGAC-GTGGATTGTAGTTGCCCTGTTCGTCAA 59 *** **** ****** *********** ****** *** **************** consensus_5438#0 GCCGTCGGTTTCCCTGTCAAGTGTTCGAGTGTCGAGTCCTACTACGAAGAAATGCGTTCG 116 consensus_5438#1 GCCGTCGGTTTCCCTGTCAAGTGTTCGAGTGTCGAGTC-TACTACGAAGAAATGCGTTCG 118 ************************************** ********************* consensus_5438#0 TTCGCCGTATTTGCGGTGGTGTCGCTAGTGCTGATGGCAGGCGGCACCCAATCGCTGCCC 176 consensus_5438#1 TTCGCCGTATTTGCGGTGGTGTCGCTAGTGCTGATGGCAGGCGGCACCCAATCGCTGCCC 178 ************************************************************ consensus_5438#0 CGATCGGCCGCCGAAATTGCCACGGACATCTACCGCACCTGCCTTGCCAGTGAGCATGGG 236 consensus_5438#1 CGATCGGCCGC-GAAATTGCCACGGACATCTACCGCACCTGCCTTGCCAGTGAGCATGGG 237 *********** ************************************************ consensus_5438#0 CTGAAGTGTGCCAAAGCGAAGGCCCTCGCCTGGATGGCGAATGTGGCCGAGCAGGACGAG 296 consensus_5438#1 CTGAAGTGTGCCAAAGCGAAGGCCCTCGCCTGGATGGCGAATGTGGCCGAGCAGGACGAG 297 ************************************************************ consensus_5438#0 ATTCCGATCACCGAGTCAATCACGATCGTGCGCACCGGTACGGAGGAGCCGGAACAGCCC 356 consensus_5438#1 ATTCCGATCACCGAGTCAATCACGATCGTGCGCACCGGTACGGAGGAGCCGGAACAGCCC 357 ************************************************************ consensus_5438#0 GCGGACACCGAGCAGCAACGTAGCGCTGGCGGAGTGCGACTTCTGAACAGTATCGACAGC 416 consensus_5438#1 GCGGACACCGAGCAGCAACGTAGCGCTGGCGGAGTGCGACTTCTGAACAGTATCGACAGC 417 ************************************************************ consensus_5438#0 TTCCTCTCGACACACGCCCTCAAAA-TGACCCCGCCTGCTGTGCTTCAGTCCGAGGAAGC 475 consensus_5438#1 TTCCTCTCGACACACGCCCTCAAANATGACCCCGCCTGCTGTGCTTCAGTCCGAGNGGA- 476 ************************ ***************************** consensus_5438#0 TCGTGCCTACATTCCCGACACGTTGCTGCAGGGAGGACTCGCCGACAATCTGATTGTGCC 535 consensus_5438#1 -NANGCCTCGCTGCCTTACA--TTTCCCCGACCACCGTCTGCTGC--GCGCGGGCAGGCA 531 **** * ** *** ** * * * ** * * ** consensus_5438#0 ATTGACGGAAGGAAACGTTGCGGAAGGACGTGGTTTTGTGAAGAAAGTCATGATTCCCTT 595 consensus_5438#1 CTCGCCCGACCNATTTCCTGCANTCGC-TGCCCACNTGNACGCGGACACGCGGNANCACG 590 * * * ** * *** * * ** * * * * consensus_5438#0 CCTGCTGGGTATCAAGTTCAAGTCGACCGTCCTGGTCCCGATGGCGCTCGCTC-TCATCG 654 consensus_5438#1 CTNNGCGGNGCNACAGCGACGGCTGGCCTCCCCG---CTGACANCACNCGCTCCTTGNCT 647 * ** ** * * ** ** * * ** * * ***** * * consensus_5438#0 CCCTCAAGACCTGGAANGGCATGACTCTTGGTCTGCTGTCGCTGGTGCTGTCCGGTGCGA 714 consensus_5438#1 TTCCCCTTTCCCTGCC-------------------------------------------- 663 * * ** * consensus_5438#0 TGATGATCTTCAAGTTCGCCAAGCCAAAGATCGTCAACTACGAGGTGGTGCACTATCCGC 774 consensus_5438#1 ------------------------------------------------------------ consensus_5438#0 CACCGCACCATGTGCACCACGTCGACCATCACATCGATCATCACGCACCGCACGTGCACT 834 consensus_5438#1 ------------------------------------------------------------ consensus_5438#0 GGGACGCTCCGCCCGCGTGGAAAGAAACGATCNATGGACGCCCACGAACAGGCGTACACC 894 consensus_5438#1 ------------------------------------------------------------ consensus_5438#0 GGGCAGC 901 consensus_5438#1 ------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||