cluster # 5438

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Anopheles gambiae
cluster # 5438 cluster # 5438 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5438#0 length = 901 sequences # 3

consensus_5438#1 length = 663 sequences # 1

consensusID : consensus_5438#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 901
fasta sequence

                              [AATCGCCANGAGGTANATCAGCGTGGACCGTGGATCGTA-NTTGCCCTGTTCGTCAAGCCGTCGGTTTCCCTGTCAAGTGTTCGAGTGTCGAGTCCTACTACGAAGAAATGCGTTCGTTCGCCGTATTTGCGGTGGTGTCGCTAGTGCTGATGGCAGGCGGCACCCAATCGCTGCCCCGATCGGCCGCCGAAATTGCCACGGACATCTACCGCACCTGCCTTGCCAGTGAGCATGGGCTGAAGTGTGCCAAAGCGAAGGCCCTCGCCTGGATGGCGAATGTGGCCGAGCAGGACGAGATTCCGATCACCGAGTCAATCACGATCGTGCGCACCGGTACGGAGGAGCCGGAACAGCCCGCGGACACCGAGCAGCAACGTAGCGCTGGCGGAGTGCGACTTCTGAACAGTATCGACAGCTTCCTCTCGACACACGCCCTCAAAATGACCCCGCCTGCTGTGCTTCAGTCCGAGGAAGCTCGTGCCTACATTCCCGACACGTTGCTGCAGGGAGGACTCGCCGACAATCTGATTGTGCCATTGACGGAAGGAAACGTTGCGGAAGGACGTGGTTTTGTGAAGAAAGTCATGATTCCCTTCCTGCTGGGTATCAAGTTCAAGTCGACCGTCCTGGTCCCGATGGCGCTCGCTCTCATCGCCCTCAAGACCTGGAANGGCATGACTCTTGGTCTGCTGTCGCTGGTGCTGTCCGGTGCGATGATGATCTTCAAGTTCGCCAAGCCAAAGATCGTCAACTACGAGGTGGTGCACTATCCGCCACCGCACCATGTGCACCACGTCGACCATCACATCGATCATCACGCACCGCACGTGCACTGGGACGCTCCGCCCGCGTGGAAAGAAACGATCNATGGACGCCCACGAACAGGCGTACACCGGGCAGC]

[+] EMBL BX466163             [AATCGCCANGAGGTANATCAGCGTGGACCGTGGATCGTACNTTGCCCTGTTCGTCAAGCCGTCGGTTTCCCTGTCAAGTGTTCGAGTGTCGAGTCCTACTACGAAGAAATGCGTTCGTTCGCCGTATTTGCGGTGGTGTCGCTAGTGCTGATTGCAAGCGGCACCCAATCGCTG CCCGATCGGCCGCCGAAGTTGCCACGGACATCTACCGGACCTGCCTTGCCAGTGAGCATGGGCTGAAGTGTGCCAAAGCGAAGGCCCTCGCCTGGATGGCGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BX626532             [                            CGTGGATCGTA GTTGCCCTGTTCGTCAAGCCGTCGGTTTCCCTGTCAAGTGTTCGAGTGTCGAGTCCTACTACGAAGAAATGCGTTCGTTCGCCGTATTTGCGGTGGTGTCGCTAGTGCTGATGGCNGGCGGCACCCAATCGCTGCCCCGATCGGCCGCCGAAATTGCCACGGACATCTACCGCACCTGCCTTGCCAGTGAGCATGGGCTGAAGTGTGCCAAAGCGAAGGCCCTCGCCTGGATGGCGAATGTGGCCGAGCAGGACGAGATTCCGATCACCGAGTCAATCACGATCGTGCGCACCGGTACGGAGGAGCCGGAACAGCCCGCGGACACCGAGCAGCAACGTAGCGCTGGCGGAGTGCGACTTCTGAACAGTATCGACAGCTTCCTCTCGACACACGCCCTCAAAATGACCCCGCCTGCTGTGCTTCAGTCCGAGGAAGCTCGTGCCTACATTCCCGACACGTTGCTGCAGGGAGGACTCGCCGACAATCTGATTGTGCCATTGACGGAAGGAAACGTTGCGGAAGGACGTGGTTTTGTGAAGAAAGTCATGATTCCCTTCCTGCTGGGTATCAAGTTCAAGTCGACCGTCCTGGTCCCGATGGCGCTCGCTCTCATCGCCCTCAAGACCTGGAANGGCATGACTCTTGGTCTGCTGTCGCTGGTGCTGTCCGGTGCGATGATGATCTTCAAGTTCGCCAAGCCAAAGA                                                                                                                                                             ]
[+] EMBL BX623182             [                                                                                                                                       GTGTCGCTAGTGCTGATGGCAGGCGGCACCCAATCGCTGCCCCGATCGGCCGCCGAAATTGCCACGGACATCTACCGCACCTGCCTTGCCAGTGAGCATGGGCTGAAGTGTGCCAAAGCGAAGGCCCTCGCCTGGATGGCGAATGTGGCCGAGCAGGACGAGATTCCGATCACCGAGTCAATCACGATCGTGCGCACCGGTACGGAGGAGCCGGAACAGCCCGCGGACACCGAGCAGCAACGTAGCGCTGGCGGAGTGCGACTTCTGAACAGTATCGACAGCTTCCTCTCGACACACGCCCTCAAAATGACCCCGCCTGCTGTGCTTCAGTCCGAGGAAGCTCGTGCCTACATTCCCGACACGTTGCTGCAGGGAGGACTCGCCGACAATCTGATTGTGCCATTGACGGAAGGAAACGTTGCGGAAGGACGTGGTTTTGTGAAGAAAGTCATGATTCCCTTCCTGCTGGGTATCAAGTTCAAGTCGACCGTCCTGGTCCCGATGGCGCTCGCTCTCATCGCCCTCAAGACCTGGAAGGCCATGACTCTTGGTCTGCTGTCGCTGGTGCTGTCCGGTGCGATGATGATCTTCAAGTTCGCCAAGCCAAAGATCGTCAACTACGAGGTGGTGCACTATCCGCCACCGCACCATGTGCACCACGTCGACCATCACATCGATCATCACGCACCGCACGTGCACTGGGACGCTCCGCCCGCGTGGAAAGAAACGATCNATGGACGCCCACGAACAGGCGTACACCGGGCAGC]




>consensus_5438#0
AATCGCCANGAGGTANATCAGCGTGGACCGTGGATCGTANTTGCCCTGTTCGTCAAGCCG
TCGGTTTCCCTGTCAAGTGTTCGAGTGTCGAGTCCTACTACGAAGAAATGCGTTCGTTCG
CCGTATTTGCGGTGGTGTCGCTAGTGCTGATGGCAGGCGGCACCCAATCGCTGCCCCGAT
CGGCCGCCGAAATTGCCACGGACATCTACCGCACCTGCCTTGCCAGTGAGCATGGGCTGA
AGTGTGCCAAAGCGAAGGCCCTCGCCTGGATGGCGAATGTGGCCGAGCAGGACGAGATTC
CGATCACCGAGTCAATCACGATCGTGCGCACCGGTACGGAGGAGCCGGAACAGCCCGCGG
ACACCGAGCAGCAACGTAGCGCTGGCGGAGTGCGACTTCTGAACAGTATCGACAGCTTCC
TCTCGACACACGCCCTCAAAATGACCCCGCCTGCTGTGCTTCAGTCCGAGGAAGCTCGTG
CCTACATTCCCGACACGTTGCTGCAGGGAGGACTCGCCGACAATCTGATTGTGCCATTGA
CGGAAGGAAACGTTGCGGAAGGACGTGGTTTTGTGAAGAAAGTCATGATTCCCTTCCTGC
TGGGTATCAAGTTCAAGTCGACCGTCCTGGTCCCGATGGCGCTCGCTCTCATCGCCCTCA
AGACCTGGAANGGCATGACTCTTGGTCTGCTGTCGCTGGTGCTGTCCGGTGCGATGATGA
TCTTCAAGTTCGCCAAGCCAAAGATCGTCAACTACGAGGTGGTGCACTATCCGCCACCGC
ACCATGTGCACCACGTCGACCATCACATCGATCATCACGCACCGCACGTGCACTGGGACG
CTCCGCCCGCGTGGAAAGAAACGATCNATGGACGCCCACGAACAGGCGTACACCGGGCAG
C

consensusID : consensus_5438#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 663
fasta sequence

                              [GAATTGCCACGAGGTAAGCAGTCAGCGTGGACGTGGATTGTAGTTGCCCTGTTCGTCAAGCCGTCGGTTTCCCTGTCAAGTGTTCGAGTGTCGAGTCTACTACGAAGAAATGCGTTCGTTCGCCGTATTTGCGGTGGTGTCGCTAGTGCTGATGGCAGGCGGCACCCAATCGCTGCCCCGATCGGCCGCGAAATTGCCACGGACATCTACCGCACCTGCCTTGCCAGTGAGCATGGGCTGAAGTGTGCCAAAGCGAAGGCCCTCGCCTGGATGGCGAATGTGGCCGAGCAGGACGAGATTCCGATCACCGAGTCAATCACGATCGTGCGCACCGGTACGGAGGAGCCGGAACAGCCCGCGGACACCGAGCAGCAACGTAGCGCTGGCGGAGTGCGACTTCTGAACAGTATCGACAGCTTCCTCTCGACACACGCCCTCAAANATGACCCCGCCTGCTGTGCTTCAGTCCGAGNGGANANGCCTCGCTGCCTTACATTTCCCCGACCACCGTCTGCTGCGCGCGGGCAGGCACTCGCCCGACCNATTTCCTGCANTCGCTGCCCACNTGNACGCGGACACGCGGNANCACGCTNNGCGGNGCNACAGCGACGGCTGGCCTCCCCGCTGACANCACNCGCTCCTTGNCTTTCCCCTTTCCCTGCC]

[+] EMBL AL934626             [GAATTGCCACGAGGTAAGCAGTCAGCGTGGACGTGGATTGTAGTTGCCCTGTTCGTCAAGCCGTCGGTTTCCCTGTCAAGTGTTCGAGTGTCGAGTCTACTACGAAGAAATGCGTTCGTTCGCCGTATTTGCGGTGGTGTCGCTAGTGCTGATGGCAGGCGGCACCCAATCGCTGCCCCGATCGGCCGCGAAATTGCCACGGACATCTACCGCACCTGCCTTGCCAGTGAGCATGGGCTGAAGTGTGCCAAAGCGAAGGCCCTCGCCTGGATGGCGAATGTGGCCGAGCAGGACGAGATTCCGATCACCGAGTCAATCACGATCGTGCGCACCGGTACGGAGGAGCCGGAACAGCCCGCGGACACCGAGCAGCAACGTAGCGCTGGCGGAGTGCGACTTCTGAACAGTATCGACAGCTTCCTCTCGACACACGCCCTCAAANATGACCCCGCCTGCTGTGCTTCAGTCCGAGNGGANANGCCTCGCTGCCTTACATTTCCCCGACCACCGTCTGCTGCGCGCGGGCAGGCACTCGCCCGACCNATTTCCTGCANTCGCTGCCCACNTGNACGCGGACACGCGGNANCACGCTNNGCGGNGCNACAGCGACGGCTGGCCTCCCCGCTGACANCACNCGCTCCTTGNCTTTCCCCTTTCCCTGCC]




>consensus_5438#1
GAATTGCCACGAGGTAAGCAGTCAGCGTGGACGTGGATTGTAGTTGCCCTGTTCGTCAAG
CCGTCGGTTTCCCTGTCAAGTGTTCGAGTGTCGAGTCTACTACGAAGAAATGCGTTCGTT
CGCCGTATTTGCGGTGGTGTCGCTAGTGCTGATGGCAGGCGGCACCCAATCGCTGCCCCG
ATCGGCCGCGAAATTGCCACGGACATCTACCGCACCTGCCTTGCCAGTGAGCATGGGCTG
AAGTGTGCCAAAGCGAAGGCCCTCGCCTGGATGGCGAATGTGGCCGAGCAGGACGAGATT
CCGATCACCGAGTCAATCACGATCGTGCGCACCGGTACGGAGGAGCCGGAACAGCCCGCG
GACACCGAGCAGCAACGTAGCGCTGGCGGAGTGCGACTTCTGAACAGTATCGACAGCTTC
CTCTCGACACACGCCCTCAAANATGACCCCGCCTGCTGTGCTTCAGTCCGAGNGGANANG
CCTCGCTGCCTTACATTTCCCCGACCACCGTCTGCTGCGCGCGGGCAGGCACTCGCCCGA
CCNATTTCCTGCANTCGCTGCCCACNTGNACGCGGACACGCGGNANCACGCTNNGCGGNG
CNACAGCGACGGCTGGCCTCCCCGCTGACANCACNCGCTCCTTGNCTTTCCCCTTTCCCT
GCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5438#0      -AATCGCCANGAGGTANA---TCAGCGTGGACCGTGGATCGTANTTGCCCTGTTCGTCAA 56
consensus_5438#1      GAATTGCCACGAGGTAAGCAGTCAGCGTGGAC-GTGGATTGTAGTTGCCCTGTTCGTCAA 59
                       *** **** ******     *********** ****** *** ****************

consensus_5438#0      GCCGTCGGTTTCCCTGTCAAGTGTTCGAGTGTCGAGTCCTACTACGAAGAAATGCGTTCG 116
consensus_5438#1      GCCGTCGGTTTCCCTGTCAAGTGTTCGAGTGTCGAGTC-TACTACGAAGAAATGCGTTCG 118
                      ************************************** *********************

consensus_5438#0      TTCGCCGTATTTGCGGTGGTGTCGCTAGTGCTGATGGCAGGCGGCACCCAATCGCTGCCC 176
consensus_5438#1      TTCGCCGTATTTGCGGTGGTGTCGCTAGTGCTGATGGCAGGCGGCACCCAATCGCTGCCC 178
                      ************************************************************

consensus_5438#0      CGATCGGCCGCCGAAATTGCCACGGACATCTACCGCACCTGCCTTGCCAGTGAGCATGGG 236
consensus_5438#1      CGATCGGCCGC-GAAATTGCCACGGACATCTACCGCACCTGCCTTGCCAGTGAGCATGGG 237
                      *********** ************************************************

consensus_5438#0      CTGAAGTGTGCCAAAGCGAAGGCCCTCGCCTGGATGGCGAATGTGGCCGAGCAGGACGAG 296
consensus_5438#1      CTGAAGTGTGCCAAAGCGAAGGCCCTCGCCTGGATGGCGAATGTGGCCGAGCAGGACGAG 297
                      ************************************************************

consensus_5438#0      ATTCCGATCACCGAGTCAATCACGATCGTGCGCACCGGTACGGAGGAGCCGGAACAGCCC 356
consensus_5438#1      ATTCCGATCACCGAGTCAATCACGATCGTGCGCACCGGTACGGAGGAGCCGGAACAGCCC 357
                      ************************************************************

consensus_5438#0      GCGGACACCGAGCAGCAACGTAGCGCTGGCGGAGTGCGACTTCTGAACAGTATCGACAGC 416
consensus_5438#1      GCGGACACCGAGCAGCAACGTAGCGCTGGCGGAGTGCGACTTCTGAACAGTATCGACAGC 417
                      ************************************************************

consensus_5438#0      TTCCTCTCGACACACGCCCTCAAAA-TGACCCCGCCTGCTGTGCTTCAGTCCGAGGAAGC 475
consensus_5438#1      TTCCTCTCGACACACGCCCTCAAANATGACCCCGCCTGCTGTGCTTCAGTCCGAGNGGA- 476
                      ************************  *****************************     

consensus_5438#0      TCGTGCCTACATTCCCGACACGTTGCTGCAGGGAGGACTCGCCGACAATCTGATTGTGCC 535
consensus_5438#1      -NANGCCTCGCTGCCTTACA--TTTCCCCGACCACCGTCTGCTGC--GCGCGGGCAGGCA 531
                          ****   * **  ***  ** *  *    *      ** *       *     ** 

consensus_5438#0      ATTGACGGAAGGAAACGTTGCGGAAGGACGTGGTTTTGTGAAGAAAGTCATGATTCCCTT 595
consensus_5438#1      CTCGCCCGACCNATTTCCTGCANTCGC-TGCCCACNTGNACGCGGACACGCGGNANCACG 590
                       * * * **   *     ***    *   *      **       *  *  *    *   

consensus_5438#0      CCTGCTGGGTATCAAGTTCAAGTCGACCGTCCTGGTCCCGATGGCGCTCGCTC-TCATCG 654
consensus_5438#1      CTNNGCGGNGCNACAGCGACGGCTGGCCTCCCCG---CTGACANCACNCGCTCCTTGNCT 647
                      *     **      **     *  * **  ** *   * **   * * ***** *   * 

consensus_5438#0      CCCTCAAGACCTGGAANGGCATGACTCTTGGTCTGCTGTCGCTGGTGCTGTCCGGTGCGA 714
consensus_5438#1      TTCCCCTTTCCCTGCC-------------------------------------------- 663
                        * *    **  *                                              

consensus_5438#0      TGATGATCTTCAAGTTCGCCAAGCCAAAGATCGTCAACTACGAGGTGGTGCACTATCCGC 774
consensus_5438#1      ------------------------------------------------------------
                                                                                  

consensus_5438#0      CACCGCACCATGTGCACCACGTCGACCATCACATCGATCATCACGCACCGCACGTGCACT 834
consensus_5438#1      ------------------------------------------------------------
                                                                                  

consensus_5438#0      GGGACGCTCCGCCCGCGTGGAAAGAAACGATCNATGGACGCCCACGAACAGGCGTACACC 894
consensus_5438#1      ------------------------------------------------------------
                                                                                  

consensus_5438#0      GGGCAGC 901
consensus_5438#1      -------