cluster # 5439

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Anopheles gambiae
cluster # 5439 cluster # 5439 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5439#0 length = 704 sequences # 3

consensus_5439#1 length = 629 sequences # 1

consensusID : consensus_5439#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 704
fasta sequence

                              [CCGCGGCTGGTTGGTGAATGCGATATCGTGCGTGTGTTGTCTTTTTTTTCTCTACAAGACGAAACGAAACGGGCAAGTTACGTCGCTCCCGGAGAGCTGTAATTTGTTAAGTGAAAGTATCTAATTCCCCAACACCAATATGCATTCGCTGCTGAAGCTGTTTTCATCCGGCACAGCCAACCATGGCCTGCAGCAATTCCGCACCGTCGCCACCAAACCACGCACGGCCGTGGTTATGCTCAACATGGGAGGGCCCCAAAACACGGACCAGGTACACGACTACCTGCACCGCATCATGACCGATCGCGATATGATTCAGCTGCCGGTGCAAAGCAAACTCGGTCCCTGGATAGCGAAACGTCGCACGCCGGAGGTGCAGAAAAAGTACAGCGAAATCGGGGGCGGTTCGCCGATTCTAAAGTGGACGAACGTGCAGGGCGAGCTGATGTGCAAGCAGCTGGACAAGCTATCGCCCGAGACGGCACCGCACAAACACTACGTTGCGTTCCGGTACGTGAACCCGCTCACGGAGGACACCTTCCGCG-AGGTGGAGCGTGACCAG-CCCGAGC-GGGTGGTCCTGTTTTCCCAGTACCCG-CAGTACAGCTGTGCCACGTCCGGCTCGAGCTTCAATGCCATCTACACCCACTTCAAGGAGAACCCGCTGAACGGGCTGGCGCAGGCCCGCTGGAGCGTGATCGACCGGT]

[+] EMBL BM597883             [CCGCGGCTGGTTGGTGAATGCGATATCGTGCGTGTGTTGTCTTTTTTTTCTCTACAAGACGAAACGAAACGGGCAAGTTACGTCGCTCCCGGAGAGCTGTAATTTGTTAAGTGAAAGTATCTAATTCCCCAACACCAATATGCATTCGCTGCTGAAGCTGTTTTCATCCGGCACAGCCAACCATGGCCTGCAGCAATTCCGCACCGTCGCCACCAAACCACGCACGGCCGTGGTTATGCTCAACATGGGAGGGCCCCAAAACACGGACCAGGTACACGACTACCTGCACCGCATCATGACCGATCGCGATATGATTCAGCTGCCGGTGCAAAGCAAACTCGGTCCCTGGATAGCGAAACGTCGCACGCCGGAGGTGCAGAAAAAGTACAGCGAAATCGGGGGCGGTTCGCCGATTCTAAAGTGGACGAACGTGCAGGGCGAGCTGATGTGCAAGCAGCTGGACAAGCTATCGCCCGAGACGGCACCGCACAAACACTACGTTGCGTTCCGGTACGTGAACCCGCTCACGGAGGACACCTTCCGCG AGGTGGAGCGTGACCAG CCCGAGC GGGTGGTCCTGTTTTCCCAGTACCCG CAGTACAGCTGTGCCACGTCCGGCTCGAGCTTCAATGCCATCTACACCCACTTCAAGGAGAACCCGCTGAACGGGCTGGCGCAGGCCCGCTGGAGCGTGATCGACCG  ]
[+] EMBL BM604554             [                            ccgGTGTGTTGTCTTTTTTTTCTCTACAAGACGAAACGAAACGGGCAAGTTACGTCGCTCCCGGAGAGCTGTAATTTGTTAAGTGAAAGTATCTAATTCCCCAACACCAATATGCATTCGCTGCTGAAGCTGTTTTCATCCGGCACAGCCAACCATGGCCTGCAGCAATTCCGCACCGTCGCCACCAAACCACGCACGGCCGTGGTTATGCTCAACATGGGAGGGCCCCAAAACACGGACCAGGTACACGACTACCTGCACCGCATCATGACCGATCGCGATATGATTCAGCTGCCGGTGCAAAGCAAACTCGGTCCCTGGATAGCGAAACGTCGCACGCCGGAGGTGCAGAAAAAGTACAGCGAAATCGGGGGCGGTTCGCCGATTCTAAAGTGGACGAACGTGCAGGGCGAGCTGATGTGCAAGCAGCTGGACAAGCTATCGCCCGAGACGGCACCGCACAAACACTACGTTGCGTTCCGGTACGTGAACCCGCTCACGGAGGACACCTTCCGCGAAGGTGGAGCGTGACCAGCCCCGAGCGGGGTGGTCCTGTTTTCCCAGTACCCGCCAGTACAGCTGTGCCACGTC                                                                                         ]
[+] EMBL BM614763             [                                     ccgCTTTTTTTTCTCTACAAGACGAAACGAAACGGGCAAGTTACGTCGCTCCCGGAGAGCTGTAATTTGTTAAGTGAAAGTATCTAATTCCCCAACACCAATATGCATTCGCTGCTGAAGCTGTTTTCATCCGGTACAGCCAACCATGGCCTGCAGCAATTCCGCACCGTCACCACCAAACCACGCACGGCCGTGGTTATGCTCAACATGGGAGGGCCCCAAAATACGGACCAGGTGCACGACTACCTGCACCGCATCATGACCGATCGCGATATGATTCAGCTGCCGGTGCAAAGCAAACTCGGTCCCTGGATAGCGAAACGTCGCACGCCGGAGGTGCAGAAAAAGTACAGCGAAATCGGGGGCGGTTCGCCGATTCTAAAGTGGACGAACGTGCAGGGCGAGCTGATGTGCAAGCAGCTGGACAAGCTATCGCCGGAGACAGCACCGCACAAACACTACGTTGCGTTCCGCTACGTGAACCCGCTCACGGAGGACACCTTCCGCG AGGTGGAGCGTGACCAG CCCGAGC GGGTGGTCCTGTTTTCCCAGTACCCG CAGTACAGCTGTGCCACGTCCGGCTCGAGCTTCAATGCCATCTACACCCACTTCAAGGAGAACCCGCTGAACGGGCTGGCGCACGCCCGCTGGAGCGTGATCGACCGGT]




>consensus_5439#0
CCGCGGCTGGTTGGTGAATGCGATATCGTGCGTGTGTTGTCTTTTTTTTCTCTACAAGAC
GAAACGAAACGGGCAAGTTACGTCGCTCCCGGAGAGCTGTAATTTGTTAAGTGAAAGTAT
CTAATTCCCCAACACCAATATGCATTCGCTGCTGAAGCTGTTTTCATCCGGCACAGCCAA
CCATGGCCTGCAGCAATTCCGCACCGTCGCCACCAAACCACGCACGGCCGTGGTTATGCT
CAACATGGGAGGGCCCCAAAACACGGACCAGGTACACGACTACCTGCACCGCATCATGAC
CGATCGCGATATGATTCAGCTGCCGGTGCAAAGCAAACTCGGTCCCTGGATAGCGAAACG
TCGCACGCCGGAGGTGCAGAAAAAGTACAGCGAAATCGGGGGCGGTTCGCCGATTCTAAA
GTGGACGAACGTGCAGGGCGAGCTGATGTGCAAGCAGCTGGACAAGCTATCGCCCGAGAC
GGCACCGCACAAACACTACGTTGCGTTCCGGTACGTGAACCCGCTCACGGAGGACACCTT
CCGCGAGGTGGAGCGTGACCAGCCCGAGCGGGTGGTCCTGTTTTCCCAGTACCCGCAGTA
CAGCTGTGCCACGTCCGGCTCGAGCTTCAATGCCATCTACACCCACTTCAAGGAGAACCC
GCTGAACGGGCTGGCGCAGGCCCGCTGGAGCGTGATCGACCGGT

consensusID : consensus_5439#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 629
fasta sequence

                              [TNGCCCGAGGTATGCGTGTGTTGTCTTTTTTTTCTCTACAAGACGAAACGAAACGGGCAAGTTACGTCGCTCCCGGAGAGCTGTAATTTGTTAAGTGAAAGTATCTAATTCCCCAACACCAATATGCATTCGCTGCTGAAGCTGTTTTCATCCGGTACAGCCAACCATGGCCTGCAGCAATTCCGCACCGTCACCACCAAACCACGCACGGCCGTGGTTATGCTCAACATGGGAGGGCCCCAAAATACGGACCAGGTGCACGACTACCTGCACCGATCATGACCGATCGCGATATGATTCAGCTGCCGGTGCAAAGCAAACTCGGTCCCTGGATAGCGAAACGTCGCACGCCGGAGGTGCAGAAAAAGTACAGCGAAATCGGGGTGCGGTTCGCCGATTCTAAAGTGGACGAACGTGCCNGTGGCGAGCTGATGTGCAAGCAGCTGGACAAGCTATCGGCCGGAGACAGCACCGACACAAACACTACGTAGCGTTCCGCTACGTGAACCCGCTCACGGAGGACACCTTCNCGCGATGTGGAGCGTGACCAGCCGAGCGGGTGGTACTGTGGCCCAGTACCCGCAGTACAGCTGTGCCACGTCCGGCTACGAGCTTCNATGCCATCTACA]

[+] EMBL AL934627             [TNGCCCGAGGTATGCGTGTGTTGTCTTTTTTTTCTCTACAAGACGAAACGAAACGGGCAAGTTACGTCGCTCCCGGAGAGCTGTAATTTGTTAAGTGAAAGTATCTAATTCCCCAACACCAATATGCATTCGCTGCTGAAGCTGTTTTCATCCGGTACAGCCAACCATGGCCTGCAGCAATTCCGCACCGTCACCACCAAACCACGCACGGCCGTGGTTATGCTCAACATGGGAGGGCCCCAAAATACGGACCAGGTGCACGACTACCTGCACCGATCATGACCGATCGCGATATGATTCAGCTGCCGGTGCAAAGCAAACTCGGTCCCTGGATAGCGAAACGTCGCACGCCGGAGGTGCAGAAAAAGTACAGCGAAATCGGGGTGCGGTTCGCCGATTCTAAAGTGGACGAACGTGCCNGTGGCGAGCTGATGTGCAAGCAGCTGGACAAGCTATCGGCCGGAGACAGCACCGACACAAACACTACGTAGCGTTCCGCTACGTGAACCCGCTCACGGAGGACACCTTCNCGCGATGTGGAGCGTGACCAGCCGAGCGGGTGGTACTGTGGCCCAGTACCCGCAGTACAGCTGTGCCACGTCCGGCTACGAGCTTCNATGCCATCTACA]




>consensus_5439#1
TNGCCCGAGGTATGCGTGTGTTGTCTTTTTTTTCTCTACAAGACGAAACGAAACGGGCAA
GTTACGTCGCTCCCGGAGAGCTGTAATTTGTTAAGTGAAAGTATCTAATTCCCCAACACC
AATATGCATTCGCTGCTGAAGCTGTTTTCATCCGGTACAGCCAACCATGGCCTGCAGCAA
TTCCGCACCGTCACCACCAAACCACGCACGGCCGTGGTTATGCTCAACATGGGAGGGCCC
CAAAATACGGACCAGGTGCACGACTACCTGCACCGATCATGACCGATCGCGATATGATTC
AGCTGCCGGTGCAAAGCAAACTCGGTCCCTGGATAGCGAAACGTCGCACGCCGGAGGTGC
AGAAAAAGTACAGCGAAATCGGGGTGCGGTTCGCCGATTCTAAAGTGGACGAACGTGCCN
GTGGCGAGCTGATGTGCAAGCAGCTGGACAAGCTATCGGCCGGAGACAGCACCGACACAA
ACACTACGTAGCGTTCCGCTACGTGAACCCGCTCACGGAGGACACCTTCNCGCGATGTGG
AGCGTGACCAGCCGAGCGGGTGGTACTGTGGCCCAGTACCCGCAGTACAGCTGTGCCACG
TCCGGCTACGAGCTTCNATGCCATCTACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5439#0      CCGCGGCTGGTTGGTGAATGCGATATCGTGCGTGTGTTGTCTTTTTTTTCTCTACAAGAC 60
consensus_5439#1      ---------------TNGCCCGAGGT-ATGCGTGTGTTGTCTTTTTTTTCTCTACAAGAC 44
                                          ***  *  ********************************

consensus_5439#0      GAAACGAAACGGGCAAGTTACGTCGCTCCCGGAGAGCTGTAATTTGTTAAGTGAAAGTAT 120
consensus_5439#1      GAAACGAAACGGGCAAGTTACGTCGCTCCCGGAGAGCTGTAATTTGTTAAGTGAAAGTAT 104
                      ************************************************************

consensus_5439#0      CTAATTCCCCAACACCAATATGCATTCGCTGCTGAAGCTGTTTTCATCCGGCACAGCCAA 180
consensus_5439#1      CTAATTCCCCAACACCAATATGCATTCGCTGCTGAAGCTGTTTTCATCCGGTACAGCCAA 164
                      *************************************************** ********

consensus_5439#0      CCATGGCCTGCAGCAATTCCGCACCGTCGCCACCAAACCACGCACGGCCGTGGTTATGCT 240
consensus_5439#1      CCATGGCCTGCAGCAATTCCGCACCGTCACCACCAAACCACGCACGGCCGTGGTTATGCT 224
                      **************************** *******************************

consensus_5439#0      CAACATGGGAGGGCCCCAAAACACGGACCAGGTACACGACTACCTGCACCGCATCATGAC 300
consensus_5439#1      CAACATGGGAGGGCCCCAAAATACGGACCAGGTGCACGACTACCTGCACCG-ATCATGAC 283
                      ********************* *********** ***************** ********

consensus_5439#0      CGATCGCGATATGATTCAGCTGCCGGTGCAAAGCAAACTCGGTCCCTGGATAGCGAAACG 360
consensus_5439#1      CGATCGCGATATGATTCAGCTGCCGGTGCAAAGCAAACTCGGTCCCTGGATAGCGAAACG 343
                      ************************************************************

consensus_5439#0      TCGCACGCCGGAGGTGCAGAAAAAGTACAGCGAAATCGGGG-GCGGTTCGCCGATTCTAA 419
consensus_5439#1      TCGCACGCCGGAGGTGCAGAAAAAGTACAGCGAAATCGGGGTGCGGTTCGCCGATTCTAA 403
                      ***************************************** ******************

consensus_5439#0      AGTGGACGAACGTGCAGG--GCGAGCTGATGTGCAAGCAGCTGGACAAGCTATCGCCCG- 476
consensus_5439#1      AGTGGACGAACGTGCCNGTGGCGAGCTGATGTGCAAGCAGCTGGACAAGCTATCGGCCGG 463
                      ***************  *  *********************************** *** 

consensus_5439#0      AGACGGCACCG-CACAAACACTACGTTGCGTTCCGGTACGTGAACCCGCTCACGGAGGAC 535
consensus_5439#1      AGACAGCACCGACACAAACACTACGTAGCGTTCCGCTACGTGAACCCGCTCACGGAGGAC 523
                      **** ****** ************** ******** ************************

consensus_5439#0      ACCTTCC-GCGAGGTGGAGCGTGACCAGCCCGAGCGGGTGGTCCTGTTTTCCCAGTACCC 594
consensus_5439#1      ACCTTCNCGCGATGTGGAGCGTGACCAGCC-GAGCGGGTGGTACTGTGG-CCCAGTACCC 581
                      ******  **** ***************** *********** ****   **********

consensus_5439#0      GCAGTACAGCTGTGCCACGTCCGGCT-CGAGCTTCAATGCCATCTACACCCACTTCAAGG 653
consensus_5439#1      GCAGTACAGCTGTGCCACGTCCGGCTACGAGCTTCNATGCCATCTACA------------ 629
                      ************************** ******** ************            

consensus_5439#0      AGAACCCGCTGAACGGGCTGGCGCAGGCCCGCTGGAGCGTGATCGACCGGT 704
consensus_5439#1      ---------------------------------------------------