cluster # 544

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Anopheles gambiae
cluster # 544 cluster # 544 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_544#0 length = 585 sequences # 1

consensus_544#1 length = 461 sequences # 1

consensusID : consensus_544#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 585
fasta sequence

                              [CAAAATGTGATATGTTTGTTTTGTACTTTTTTTTAATCTTTTTGGTATTGCCAACGGACCAAGAAAGGCGGAAAACTCGCGCACTGGAACACGCTCCCTCCGGAACCATTTTCTGGGGGAGTGGGATTTTTTTTTTAATTTTATCTCTCAACATTCCAATCTCAACAAAAAACACGCCATTCCCCGAAGCTAACGAAAAGGGCAGATGTTAGGGAAGTGAGCGCGAATCTGTTGCTGAACTGAACTGCTTGCGAATGCTCACACCGGTAGGAAGGAAGGAAGTACATCTGTCGCTGTGTACTGTGATTTGCAAAAGGTATTGTTTTATGTGGTTTTAGTTGTTTGTTGTTGTTGTTGTGTAGGCAAGCAAGAAAAACGGTGGCCCGCAGCATTTAGGGTGCAGTTAGTAGGCTCGCGCACAAACTCGATGCAGCATAGTGTGTAGAAATTGTTAGGGACAGCGTTAGAGCGTTAGACCGTAAGCAAGGCAACTGCCGCCAAGTGCCCATTTTTGGAAACATCCGCCCCCCAAGTGCCTATCGAGAAAGTAATCACTATAGAGTGTACGCGCCGTACACACAGACC]

[+] EMBL BX620825             [CAAAATGTGATATGTTTGTTTTGTACTTTTTTTTAATCTTTTTGGTATTGCCAACGGACCAAGAAAGGCGGAAAACTCGCGCACTGGAACACGCTCCCTCCGGAACCATTTTCTGGGGGAGTGGGATTTTTTTTTTAATTTTATCTCTCAACATTCCAATCTCAACAAAAAACACGCCATTCCCCGAAGCTAACGAAAAGGGCAGATGTTAGGGAAGTGAGCGCGAATCTGTTGCTGAACTGAACTGCTTGCGAATGCTCACACCGGTAGGAAGGAAGGAAGTACATCTGTCGCTGTGTACTGTGATTTGCAAAAGGTATTGTTTTATGTGGTTTTAGTTGTTTGTTGTTGTTGTTGTGTAGGCAAGCAAGAAAAACGGTGGCCCGCAGCATTTAGGGTGCAGTTAGTAGGCTCGCGCACAAACTCGATGCAGCATAGTGTGTAGAAATTGTTAGGGACAGCGTTAGAGCGTTAGACCGTAAGCAAGGCAACTGCCGCCAAGTGCCCATTTTTGGAAACATCCGCCCCCCAAGTGCCTATCGAGAAAGTAATCACTATAGAGTGTACGCGCCGTACACACAGACC]




>consensus_544#0
CAAAATGTGATATGTTTGTTTTGTACTTTTTTTTAATCTTTTTGGTATTGCCAACGGACC
AAGAAAGGCGGAAAACTCGCGCACTGGAACACGCTCCCTCCGGAACCATTTTCTGGGGGA
GTGGGATTTTTTTTTTAATTTTATCTCTCAACATTCCAATCTCAACAAAAAACACGCCAT
TCCCCGAAGCTAACGAAAAGGGCAGATGTTAGGGAAGTGAGCGCGAATCTGTTGCTGAAC
TGAACTGCTTGCGAATGCTCACACCGGTAGGAAGGAAGGAAGTACATCTGTCGCTGTGTA
CTGTGATTTGCAAAAGGTATTGTTTTATGTGGTTTTAGTTGTTTGTTGTTGTTGTTGTGT
AGGCAAGCAAGAAAAACGGTGGCCCGCAGCATTTAGGGTGCAGTTAGTAGGCTCGCGCAC
AAACTCGATGCAGCATAGTGTGTAGAAATTGTTAGGGACAGCGTTAGAGCGTTAGACCGT
AAGCAAGGCAACTGCCGCCAAGTGCCCATTTTTGGAAACATCCGCCCCCCAAGTGCCTAT
CGAGAAAGTAATCACTATAGAGTGTACGCGCCGTACACACAGACC

consensusID : consensus_544#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 461
fasta sequence

                              [GCAGAATCNCCACGAGGCGAAAAGGGCAGATGTTAGGGAACNTGAGCGCGAATCTGTTGCTGAACTGAACTGCTTGCGAATGCTCACACCGGTAGGAAGGAAGGAAGTACATCTGTCGCTGTGTACTGTGATTTGCAAAAGGTATTGTTTTATGTGGTTTTAGTTGTTTGTTGTTGTTGTTGTGTAGGCAAGCAAGAAAAACGGTGGCCCGCAGCATTTAGGGTGCAGTTAGTAGGCTCGCGCACAAACTCGATGCAGCATAGTGTGTAGGAAATTGTTAGGGACAGCGTTAGAGCGTTAGACCGTAAGCAAGGCAACTGCCGCCAAGTGCCCATTTTTGGAAACATCCGCCCCCAAGTGCCTATCGAGAAAGTAATCACTATAGAGTGTACGCGCCGTACACACAGACCCCGGNATAGACCACGCACAGCAGGAGAATTATTATAGTGTAAGAAACCAGC]

[+] EMBL BX467668             [GCAGAATCNCCACGAGGCGAAAAGGGCAGATGTTAGGGAACNTGAGCGCGAATCTGTTGCTGAACTGAACTGCTTGCGAATGCTCACACCGGTAGGAAGGAAGGAAGTACATCTGTCGCTGTGTACTGTGATTTGCAAAAGGTATTGTTTTATGTGGTTTTAGTTGTTTGTTGTTGTTGTTGTGTAGGCAAGCAAGAAAAACGGTGGCCCGCAGCATTTAGGGTGCAGTTAGTAGGCTCGCGCACAAACTCGATGCAGCATAGTGTGTAGGAAATTGTTAGGGACAGCGTTAGAGCGTTAGACCGTAAGCAAGGCAACTGCCGCCAAGTGCCCATTTTTGGAAACATCCGCCCCCAAGTGCCTATCGAGAAAGTAATCACTATAGAGTGTACGCGCCGTACACACAGACCCCGGNATAGACCACGCACAGCAGGAGAATTATTATAGTGTAAGAAACCAGC]




>consensus_544#1
GCAGAATCNCCACGAGGCGAAAAGGGCAGATGTTAGGGAACNTGAGCGCGAATCTGTTGC
TGAACTGAACTGCTTGCGAATGCTCACACCGGTAGGAAGGAAGGAAGTACATCTGTCGCT
GTGTACTGTGATTTGCAAAAGGTATTGTTTTATGTGGTTTTAGTTGTTTGTTGTTGTTGT
TGTGTAGGCAAGCAAGAAAAACGGTGGCCCGCAGCATTTAGGGTGCAGTTAGTAGGCTCG
CGCACAAACTCGATGCAGCATAGTGTGTAGGAAATTGTTAGGGACAGCGTTAGAGCGTTA
GACCGTAAGCAAGGCAACTGCCGCCAAGTGCCCATTTTTGGAAACATCCGCCCCCAAGTG
CCTATCGAGAAAGTAATCACTATAGAGTGTACGCGCCGTACACACAGACCCCGGNATAGA
CCACGCACAGCAGGAGAATTATTATAGTGTAAGAAACCAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_544#0      CAAAATGTGATATGTTTGTTTTGTACTTTTTTTTAATCTTTTTGGTATTGCCAACGGACC 60
consensus_544#1      ------------------------------------------------------------
                                                                                 

consensus_544#0      AAGAAAGGCGGAAAACTCGCGCACTGGAACACGCTCCCTCCGGAACCATTTTCTGGGGGA 120
consensus_544#1      ------------------------------------------------------------
                                                                                 

consensus_544#0      GTGGGATTTTTTTTTTAATTTTATCTCTCAACATTCCAATCTCAACAAAAAACACGCCAT 180
consensus_544#1      -----------------------------------------------------GCAGAAT 7
                                                                           *   **

consensus_544#0      TCCCCGAAGCTAACGAAAAGGGCAGATGTTAGGGAA-GTGAGCGCGAATCTGTTGCTGAA 239
consensus_544#1      CNCCACGAG---GCGAAAAGGGCAGATGTTAGGGAACNTGAGCGCGAATCTGTTGCTGAA 64
                       **   **    ***********************  **********************

consensus_544#0      CTGAACTGCTTGCGAATGCTCACACCGGTAGGAAGGAAGGAAGTACATCTGTCGCTGTGT 299
consensus_544#1      CTGAACTGCTTGCGAATGCTCACACCGGTAGGAAGGAAGGAAGTACATCTGTCGCTGTGT 124
                     ************************************************************

consensus_544#0      ACTGTGATTTGCAAAAGGTATTGTTTTATGTGGTTTTAGTTGTTTGTTGTTGTTGTTGTG 359
consensus_544#1      ACTGTGATTTGCAAAAGGTATTGTTTTATGTGGTTTTAGTTGTTTGTTGTTGTTGTTGTG 184
                     ************************************************************

consensus_544#0      TAGGCAAGCAAGAAAAACGGTGGCCCGCAGCATTTAGGGTGCAGTTAGTAGGCTCGCGCA 419
consensus_544#1      TAGGCAAGCAAGAAAAACGGTGGCCCGCAGCATTTAGGGTGCAGTTAGTAGGCTCGCGCA 244
                     ************************************************************

consensus_544#0      CAAACTCGATGCAGCATAGTGTGTAG-AAATTGTTAGGGACAGCGTTAGAGCGTTAGACC 478
consensus_544#1      CAAACTCGATGCAGCATAGTGTGTAGGAAATTGTTAGGGACAGCGTTAGAGCGTTAGACC 304
                     ************************** *********************************

consensus_544#0      GTAAGCAAGGCAACTGCCGCCAAGTGCCCATTTTTGGAAACATCCGCCCCCCAAGTGCCT 538
consensus_544#1      GTAAGCAAGGCAACTGCCGCCAAGTGCCCATTTTTGGAAACATCCGCCCCC-AAGTGCCT 363
                     *************************************************** ********

consensus_544#0      ATCGAGAAAGTAATCACTATAGAGTGTACGCGCCGTACACACAGACC------------- 585
consensus_544#1      ATCGAGAAAGTAATCACTATAGAGTGTACGCGCCGTACACACAGACCCCGGNATAGACCA 423
                     ***********************************************             

consensus_544#0      --------------------------------------
consensus_544#1      CGCACAGCAGGAGAATTATTATAGTGTAAGAAACCAGC 461