These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5440#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 870 fasta sequence [TCCTCGAGAACTGTTGGCCTACTGGTTGCGCGGTGTTTACAGATAGACAGACAGACAACCAGAACAAGCATTTAGAGTAATCGTGCGTTGGTTTTATTTTTTGTTTTTAGTAAGTTATTGCTGTTGATCTCACAACAAAACAGGAGCTATTATGAAACTGAATGGTTTCATAATACCTATCCTAAACAATTAACACCGGCTTAACTTACCGATCGTTAGAGCACTAGTTTTTTCCGTTAATTTTGAAGCACCATCATATTGCACAAATGATTGTTGATGTTGTAGATGCGAGCGTAAATTGTTACATTAATTTTAGCTTAGTTTCTATCCATTCCACATTGTAATAGTAGCTAAAACCGCACCTTTCGTGCAGTTTTCTTTAACTTTTTCAGTTTGATTTATACCATTTTACTGAACAAAAGATCAAACTAACTCGTAATGATTGAAGAAAGGAAAATAGAATAACGGCCATAATGGTTAAAATTGCAATACTTAATGTAAGGAAGCGTACGCAAGCAGCGTAAGGCAGCAAAAGGTAGATAGAACAAATCGTTCATGACTGGGGGTGCAATCAGGTTAATTGTTTTTTTAAGTTTAATTTTAGGG-ATTCACATGCCCTGTAACAGATAACGACAGAGTACAGAACAATTTCATTATTTTGGCATAAAGTAAACGTAGACTGATTTTGTTGATCGTAATGGAACAAGGATGGAACAAAGGGACAGGATTATTGTGTGTTAGAATTAGCATTGATTGCTGTATTGTACGTGTGAATTGGATGTGTTATTTTTTCACAAAACGTTTTGG-ACTACTAAACACTTTGATTGGAATCATAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGGGC] [-] EMBL CNS09GG8 [TCCTCGAGAACTGTTGGCCTACTGGTTGCGCGGTGTTTACAGATAGACAGACAGACAACCAGAACAAGCATTTAGAGTAATCGTGCGTTGGTTTTATTTTTTGTTTTTAGTAAGTTATTGCTGTTGATCTCACAACAAAACAGGAGCTATTATGAAACTGAATGGTTTCATAATACCTATCCTAAACAATTAACACCGGCTTAACTTACCGATCGTTAGAGCACTAGTTTTTTCCGTTAATTTTGAAGCACCATCATATTGCACAAATGATTGTTGATGTTGTAGATGCGAGCGTAAATTGTTACATTAATTTTAGCTTAGTTTCTATCCATTCCACATTGTAATAGTAGCTAAAACCGCACCTTTCGTGCAGTTTTCTTTAACTTTTTCAGTTTGATTTATACCATTTTACTGAACAAAAGATCAAACTAACTCGTAATGATTGAAGAAAGGAAAATAGAATAACGGCCATAATGGTTAAAATTGCAATACTTAATGTAAGGAAGCGTACGCAAGCAGCGTAAGGCAGCAAAAGGTAGATAGAACAAATCGTTCATGACTGGGGGTGCAATCAGGTTAATTGTTTTTTTAAGTTTAATTTTAGGG ATTCACATGCCCTGTAACAGATAACGACAGAGTACAGAACAATTTCATTATTTTGGCATAAAGTAAACGTAGACTGATTTTGTTGATCGTAATGGAACAAGGATGGAACAAAGGGACAGGATTATTGTGTGTTAGAATTAGCATTGATTGCTGTATTGTACGTGTGAATTGGATGTGTTATTTTTTCACAAAACGTTTTGG ACTACTAAAC ] [+] EMBL CNS09GG7 [ CAGACAGACAACCAGAACAAGCATTTAGAGTAATCGTGCGTTGGTTTTATTTTTTGTTTTTAGTAAGTTATTGCTGTTGATCTCACAACAAAACAGGAGCTATTATGAAACTGAATGGTTTCATAATACCTATCCTACACAATTAACACCGGCTTAACTTACCGATCGTTAGAGCACTAGTTTTTTCCGTTAATTTTGAAGCACCATCATATTGCACAAATGATTGTTGATGTTGTAGATGCGAGCGTAAATTGTTACATTAATTTTAGCTTAGTTTCTATCCATTCCACATTGTAATAGTAGCTAAAACCGCACCTTTCGTGCAGTTTTCTTTAACTTTTTCAGTTTGATTTATACCATTTTACTGAACAAAAGATCAAACTAACTCGTAATGATTGAAGAAAGGAAAATAGAATAACGGCCATAATGGTTAAAATTGCAATACTTAATGTAAGGAAGCGTACGCAAGCAGCGTAAGGCAGCAAAAGGTAGATAGAACAAATCGTTCATGACTGGGGGTGCAATCAGGTTAATTGTTTTTTTAAGTTTAATTTTAGGGCATTCACATGCCCTGTAACAGATAACGACAGAGTACAGAACAATTTCATTATTTTGGCATAAAGTAAACGTAGACTGATTTTGTTGATCGTAATGGAACAAGGATGGAACAAAGGGACAGGATTATTGTGTGTTAGAATTAGCATTGATTGCTGTATTGTACGTGTGAATTGGATGTGTTATTTTTTCAC AAACGTTTTGGAACTACTAAACACTTTGATTGGAATCATAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGGGC] consensusID : consensus_5440#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 729 fasta sequence [GGCAGAATCGGCACGTGGACATCACGTTAATTGAGGGATCAATAGCGCGGTGTTGGCAGATAGACAGACAGACAGACAACCAGAACAAGCATTTAGGGTGATCGTGCGTTGGTTTTATTATTTGTTTTTAGTAAGTTATTGCTGTTGATCTCACAACAAAACGGGAGCTATTATGAAACTGATAGGTTTTTTTTATCCTACACAATTAACACCGGCTTAACTTACCGATCGTTAGAGCACTAGTTTTTTCCGTTAATTTTGAAGCACCATCATATTGCACAAATGATTGTTGATGTTGTAGATGCGAGCGTAAATTGTTACATTAATTTTAGCTTAGTTTCTATCCATTCCGCATTGTAATAGTAGCAAAAACCGCACCTTTCGTGCAGTTTTCTTTAACTTTTTCAGTTTGATTTATACCATTTTTCTGAACAAAAGATCAAAGTAACTCGTAATGATTGAAGAAAGGAAAATAACGGCCATAATGGTTAAAAATTGCAAATACTTAATGTAAGGAAGCGTACGCAAGCAGCGTAAAGGCAGGCAAAAANGGGTACAGATAGAACAAGATTCGGTTCCATTGGAACCTGGGGGGGGTTGCCAAATTCCAGAAAGGCTTAAAGGGCTTCACAGTGAACTTGTTGAGTACTNNGCCGTCTTAAAAGGTTTTTCANACTGNTCTGGGNGGGAATTCCCACATTGGCCCCTGGTAACCAGGAATTACANACG] [+] EMBL BX468849 [GGCAGAATCGGCACGTGGACATCACGTTAATTGAGGGATCAATAGCGCGGTGTTGGCAGATAGACAGACAGACAGACAACCAGAACAAGCATTTAGGGTGATCGTGCGTTGGTTTTATTATTTGTTTTTAGTAAGTTATTGCTGTTGATCTCACAACAAAACGGGAGCTATTATGAAACTGATAGGTTTTTTTTATCCTACACAATTAACACCGGCTTAACTTACCGATCGTTAGAGCACTAGTTTTTTCCGTTAATTTTGAAGCACCATCATATTGCACAAATGATTGTTGATGTTGTAGATGCGAGCGTAAATTGTTACATTAATTTTAGCTTAGTTTCTATCCATTCCGCATTGTAATAGTAGCAAAAACCGCACCTTTCGTGCAGTTTTCTTTAACTTTTTCAGTTTGATTTATACCATTTTTCTGAACAAAAGATCAAAGTAACTCGTAATGATTGAAGAAAGGAAAATAACGGCCATAATGGTTAAAAATTGCAAATACTTAATGTAAGGAAGCGTACGCAAGCAGCGTAAAGGCAGGCAAAAANGGGTACAGATAGAACAAGATTCGGTTCCATTGGAACCTGGGGGGGGTTGCCAAATTCCAGAAAGGCTTAAAGGGCTTCACAGTGAACTTGTTGAGTACTNNGCCGTCTTAAAAGGTTTTTCANACTGNTCTGGGNGGGAATTCCCACATTGGCCCCTGGTAACCAGGAATTACANACG] consensusID : consensus_5440#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 513 fasta sequence [GGCCCAGGACTTNACGAGGCAGCCGATTGGCGCGGAGCAGCAATTCGTCCGCTGCGACACAAGTCGCTGATACGNGTGGAGGAAATGCACCCCAAGCGGGACACTGTTCAGCATCAGCATATTCCCAGCCGACCGTTCTTTGTGGAGCGGATGAACGAGCACCTGAAGAGCGAACATCACGTTAATTGAGGGATTAATAGCGCGGTGTTGGCAGATAGACAGACAGACAGACAACCAGAACAAGCATTTAGGGTGATCGTGCGTTGGTTTTATTATTTGTTTTTAGTAAGTTATTGCTGTTGATCTCACAACAAAACGGGAGCTATTATGAAACTGAATGGTTTTTTTTATCCTACACAATTAACACCGGCTTAACTTACCGATCGTTAGAGCACTAGTTTTTTCCGTTAATTTTGAAGCACCATCATATTGCACAAATGATTGTTGATGTTGTAGATGCGAGCGTAAATTGTTACATTAATTTTNAGCTTAGTTTCTATCCATTCCGCATTG] [+] EMBL AL934768 [GGCCCAGGACTTNACGAGGCAGCCGATTGGCGCGGAGCAGCAATTCGTCCGCTGCGACACAAGTCGCTGATACGNGTGGAGGAAATGCACCCCAAGCGGGACACTGTTCAGCATCAGCATATTCCCAGCCGACCGTTCTTTGTGGAGCGGATGAACGAGCACCTGAAGAGCGAACATCACGTTAATTGAGGGATTAATAGCGCGGTGTTGGCAGATAGACAGACAGACAGACAACCAGAACAAGCATTTAGGGTGATCGTGCGTTGGTTTTATTATTTGTTTTTAGTAAGTTATTGCTGTTGATCTCACAACAAAACGGGAGCTATTATGAAACTGAATGGTTTTTTTTATCCTACACAATTAACACCGGCTTAACTTACCGATCGTTAGAGCACTAGTTTTTTCCGTTAATTTTGAAGCACCATCATATTGCACAAATGATTGTTGATGTTGTAGATGCGAGCGTAAATTGTTACATTAATTTTNAGCTTAGTTTCTATCCATTCCGCATTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5440#0 ------------------------------------------------------------ consensus_5440#1 ------------------------------------------------------------ consensus_5440#2 GGCCCAGGACTTNACGAGGCAGCCGATTGGCGCGGAGCAGCAATTCGTCCGCTGCGACAC 60 consensus_5440#0 ------------------------------------------------------------ consensus_5440#1 ------------------------------------------------------------ consensus_5440#2 AAGTCGCTGATACGNGTGGAGGAAATGCACCCCAAGCGGGACACTGTTCAGCATCAGCAT 120 consensus_5440#0 ----------------------------------------------------TCCTCGAG 8 consensus_5440#1 -----------------------------------GGCAGAATCGGCACGTGGACATCAC 25 consensus_5440#2 ATTCCCAGCCGACCGTTCTTTGTGGAGCGGATGAACGAGCACCTGAAGAGCGAACATCAC 180 * * consensus_5440#0 AACTGTTGGCCTACTGGTTGCGCGGTGTTTACAGATAGACAGACAGACA----ACCAGAA 64 consensus_5440#1 GTTAATTGAGGGATCAATAGCGCGGTGTTGGCAGATAGACAGACAGACAGACAACCAGAA 85 consensus_5440#2 GTTAATTGAGGGATTAATAGCGCGGTGTTGGCAGATAGACAGACAGACAGACAACCAGAA 240 *** * * ********** ****************** ******* consensus_5440#0 CAAGCATTTAGAGTAATCGTGCGTTGGTTTTATTTTTTGTTTTTAGTAAGTTATTGCTGT 124 consensus_5440#1 CAAGCATTTAGGGTGATCGTGCGTTGGTTTTATTATTTGTTTTTAGTAAGTTATTGCTGT 145 consensus_5440#2 CAAGCATTTAGGGTGATCGTGCGTTGGTTTTATTATTTGTTTTTAGTAAGTTATTGCTGT 300 *********** ** ******************* ************************* consensus_5440#0 TGATCTCACAACAAAACAGGAGCTATTATGAAACTGAATGGTTTCATAATACCTATCCTA 184 consensus_5440#1 TGATCTCACAACAAAACGGGAGCTATTATGAAACTGATAGGTTT-----TTTTTATCCTA 200 consensus_5440#2 TGATCTCACAACAAAACGGGAGCTATTATGAAACTGAATGGTTT-----TTTTTATCCTA 355 ***************** ******************* ***** * ******* consensus_5440#0 AACAATTAACACCGGCTTAACTTACCGATCGTTAGAGCACTAGTTTTTTCCGTTAATTTT 244 consensus_5440#1 CACAATTAACACCGGCTTAACTTACCGATCGTTAGAGCACTAGTTTTTTCCGTTAATTTT 260 consensus_5440#2 CACAATTAACACCGGCTTAACTTACCGATCGTTAGAGCACTAGTTTTTTCCGTTAATTTT 415 *********************************************************** consensus_5440#0 GAAGCACCATCATATTGCACAAATGATTGTTGATGTTGTAGATGCGAGCGTAAATTGTTA 304 consensus_5440#1 GAAGCACCATCATATTGCACAAATGATTGTTGATGTTGTAGATGCGAGCGTAAATTGTTA 320 consensus_5440#2 GAAGCACCATCATATTGCACAAATGATTGTTGATGTTGTAGATGCGAGCGTAAATTGTTA 475 ************************************************************ consensus_5440#0 CATTAATTTTA-GCTTAGTTTCTATCCATTCCACATTGTAATAGTAGCTAAAACCGCACC 363 consensus_5440#1 CATTAATTTTA-GCTTAGTTTCTATCCATTCCGCATTGTAATAGTAGCAAAAACCGCACC 379 consensus_5440#2 CATTAATTTTNAGCTTAGTTTCTATCCATTCCGCATTG---------------------- 513 ********** ******************** ***** consensus_5440#0 TTTCGTGCAGTTTTCTTTAACTTTTTCAGTTTGATTTATACCATTTTACTGAACAAAAGA 423 consensus_5440#1 TTTCGTGCAGTTTTCTTTAACTTTTTCAGTTTGATTTATACCATTTTTCTGAACAAAAGA 439 consensus_5440#2 ------------------------------------------------------------ consensus_5440#0 TCAAACTAACTCGTAATGATTGAAGAAAGGAAAATAGAATAACGGCCATAATGGTTAAAA 483 consensus_5440#1 TCAAAGTAACTCGTAATGATTGAAGAAAGGAAA-----ATAACGGCCATAATGGTTAAAA 494 consensus_5440#2 ------------------------------------------------------------ consensus_5440#0 -TTGCAA-TACTTAATGTAAGGAAGCGTACGCAAGCAGCGTAA-GGCAGCAAAAGGTAGA 540 consensus_5440#1 ATTGCAAATACTTAATGTAAGGAAGCGTACGCAAGCAGCGTAAAGGCAGGCAAAAANGGG 554 consensus_5440#2 ------------------------------------------------------------ consensus_5440#0 TAGAACAAATCGTTCATGACTGGGGGTGCAATCAGGTTAATTGTTTTTTTAAGTTTAATT 600 consensus_5440#1 TA---CAGATAGAACAAGATTCGG--TTCCATTGGA--ACCTGGGGGGGGTTGCCAAATT 607 consensus_5440#2 ------------------------------------------------------------ consensus_5440#0 TTAGGGATTCACATGCCCTGTAACAGATAACG-ACAGAGTACAGAACAATTTCATTA--- 656 consensus_5440#1 CCAGAAAGGCTTAAAGGGCTTCACAGTGAACTTGTTGAGTACTNNGCCGTCTTAAAAGGT 667 consensus_5440#2 ------------------------------------------------------------ consensus_5440#0 TTTTGGCATAAAGTAAACGTAGACTGATTTTGTTGATCGTAATGGAACAAGGATGGAACA 716 consensus_5440#1 TTTTCANACTGNTCTGGGNGGGAATTCCCACATTGGCCCCTGGTAACCAGGAATTACANA 727 consensus_5440#2 ------------------------------------------------------------ consensus_5440#0 AAGGGACAGGATTATTGTGTGTTAGAATTAGCATTGATTGCTGTATTGTACGTGTGAATT 776 consensus_5440#1 CG---------------------------------------------------------- 729 consensus_5440#2 ------------------------------------------------------------ consensus_5440#0 GGATGTGTTATTTTTTCACAAAACGTTTTGGACTACTAAACACTTTGATTGGAATCATAA 836 consensus_5440#1 ------------------------------------------------------------ consensus_5440#2 ------------------------------------------------------------ consensus_5440#0 AAAAAAAAAAAAAAAAGGCCACATGTGCCCGGGC 870 consensus_5440#1 ---------------------------------- consensus_5440#2 ---------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||