cluster # 5440

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Anopheles gambiae
cluster # 5440 cluster # 5440 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5440#0 length = 870 sequences # 2

consensus_5440#1 length = 729 sequences # 1
consensus_5440#2 length = 513 sequences # 1

consensusID : consensus_5440#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 870
fasta sequence

                              [TCCTCGAGAACTGTTGGCCTACTGGTTGCGCGGTGTTTACAGATAGACAGACAGACAACCAGAACAAGCATTTAGAGTAATCGTGCGTTGGTTTTATTTTTTGTTTTTAGTAAGTTATTGCTGTTGATCTCACAACAAAACAGGAGCTATTATGAAACTGAATGGTTTCATAATACCTATCCTAAACAATTAACACCGGCTTAACTTACCGATCGTTAGAGCACTAGTTTTTTCCGTTAATTTTGAAGCACCATCATATTGCACAAATGATTGTTGATGTTGTAGATGCGAGCGTAAATTGTTACATTAATTTTAGCTTAGTTTCTATCCATTCCACATTGTAATAGTAGCTAAAACCGCACCTTTCGTGCAGTTTTCTTTAACTTTTTCAGTTTGATTTATACCATTTTACTGAACAAAAGATCAAACTAACTCGTAATGATTGAAGAAAGGAAAATAGAATAACGGCCATAATGGTTAAAATTGCAATACTTAATGTAAGGAAGCGTACGCAAGCAGCGTAAGGCAGCAAAAGGTAGATAGAACAAATCGTTCATGACTGGGGGTGCAATCAGGTTAATTGTTTTTTTAAGTTTAATTTTAGGG-ATTCACATGCCCTGTAACAGATAACGACAGAGTACAGAACAATTTCATTATTTTGGCATAAAGTAAACGTAGACTGATTTTGTTGATCGTAATGGAACAAGGATGGAACAAAGGGACAGGATTATTGTGTGTTAGAATTAGCATTGATTGCTGTATTGTACGTGTGAATTGGATGTGTTATTTTTTCACAAAACGTTTTGG-ACTACTAAACACTTTGATTGGAATCATAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGGGC]

[-] EMBL CNS09GG8             [TCCTCGAGAACTGTTGGCCTACTGGTTGCGCGGTGTTTACAGATAGACAGACAGACAACCAGAACAAGCATTTAGAGTAATCGTGCGTTGGTTTTATTTTTTGTTTTTAGTAAGTTATTGCTGTTGATCTCACAACAAAACAGGAGCTATTATGAAACTGAATGGTTTCATAATACCTATCCTAAACAATTAACACCGGCTTAACTTACCGATCGTTAGAGCACTAGTTTTTTCCGTTAATTTTGAAGCACCATCATATTGCACAAATGATTGTTGATGTTGTAGATGCGAGCGTAAATTGTTACATTAATTTTAGCTTAGTTTCTATCCATTCCACATTGTAATAGTAGCTAAAACCGCACCTTTCGTGCAGTTTTCTTTAACTTTTTCAGTTTGATTTATACCATTTTACTGAACAAAAGATCAAACTAACTCGTAATGATTGAAGAAAGGAAAATAGAATAACGGCCATAATGGTTAAAATTGCAATACTTAATGTAAGGAAGCGTACGCAAGCAGCGTAAGGCAGCAAAAGGTAGATAGAACAAATCGTTCATGACTGGGGGTGCAATCAGGTTAATTGTTTTTTTAAGTTTAATTTTAGGG ATTCACATGCCCTGTAACAGATAACGACAGAGTACAGAACAATTTCATTATTTTGGCATAAAGTAAACGTAGACTGATTTTGTTGATCGTAATGGAACAAGGATGGAACAAAGGGACAGGATTATTGTGTGTTAGAATTAGCATTGATTGCTGTATTGTACGTGTGAATTGGATGTGTTATTTTTTCACAAAACGTTTTGG ACTACTAAAC                                                     ]
[+] EMBL CNS09GG7             [                                               CAGACAGACAACCAGAACAAGCATTTAGAGTAATCGTGCGTTGGTTTTATTTTTTGTTTTTAGTAAGTTATTGCTGTTGATCTCACAACAAAACAGGAGCTATTATGAAACTGAATGGTTTCATAATACCTATCCTACACAATTAACACCGGCTTAACTTACCGATCGTTAGAGCACTAGTTTTTTCCGTTAATTTTGAAGCACCATCATATTGCACAAATGATTGTTGATGTTGTAGATGCGAGCGTAAATTGTTACATTAATTTTAGCTTAGTTTCTATCCATTCCACATTGTAATAGTAGCTAAAACCGCACCTTTCGTGCAGTTTTCTTTAACTTTTTCAGTTTGATTTATACCATTTTACTGAACAAAAGATCAAACTAACTCGTAATGATTGAAGAAAGGAAAATAGAATAACGGCCATAATGGTTAAAATTGCAATACTTAATGTAAGGAAGCGTACGCAAGCAGCGTAAGGCAGCAAAAGGTAGATAGAACAAATCGTTCATGACTGGGGGTGCAATCAGGTTAATTGTTTTTTTAAGTTTAATTTTAGGGCATTCACATGCCCTGTAACAGATAACGACAGAGTACAGAACAATTTCATTATTTTGGCATAAAGTAAACGTAGACTGATTTTGTTGATCGTAATGGAACAAGGATGGAACAAAGGGACAGGATTATTGTGTGTTAGAATTAGCATTGATTGCTGTATTGTACGTGTGAATTGGATGTGTTATTTTTTCAC AAACGTTTTGGAACTACTAAACACTTTGATTGGAATCATAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGGGC]




>consensus_5440#0
TCCTCGAGAACTGTTGGCCTACTGGTTGCGCGGTGTTTACAGATAGACAGACAGACAACC
AGAACAAGCATTTAGAGTAATCGTGCGTTGGTTTTATTTTTTGTTTTTAGTAAGTTATTG
CTGTTGATCTCACAACAAAACAGGAGCTATTATGAAACTGAATGGTTTCATAATACCTAT
CCTAAACAATTAACACCGGCTTAACTTACCGATCGTTAGAGCACTAGTTTTTTCCGTTAA
TTTTGAAGCACCATCATATTGCACAAATGATTGTTGATGTTGTAGATGCGAGCGTAAATT
GTTACATTAATTTTAGCTTAGTTTCTATCCATTCCACATTGTAATAGTAGCTAAAACCGC
ACCTTTCGTGCAGTTTTCTTTAACTTTTTCAGTTTGATTTATACCATTTTACTGAACAAA
AGATCAAACTAACTCGTAATGATTGAAGAAAGGAAAATAGAATAACGGCCATAATGGTTA
AAATTGCAATACTTAATGTAAGGAAGCGTACGCAAGCAGCGTAAGGCAGCAAAAGGTAGA
TAGAACAAATCGTTCATGACTGGGGGTGCAATCAGGTTAATTGTTTTTTTAAGTTTAATT
TTAGGGATTCACATGCCCTGTAACAGATAACGACAGAGTACAGAACAATTTCATTATTTT
GGCATAAAGTAAACGTAGACTGATTTTGTTGATCGTAATGGAACAAGGATGGAACAAAGG
GACAGGATTATTGTGTGTTAGAATTAGCATTGATTGCTGTATTGTACGTGTGAATTGGAT
GTGTTATTTTTTCACAAAACGTTTTGGACTACTAAACACTTTGATTGGAATCATAAAAAA
AAAAAAAAAAAAGGCCACATGTGCCCGGGC

consensusID : consensus_5440#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 729
fasta sequence

                              [GGCAGAATCGGCACGTGGACATCACGTTAATTGAGGGATCAATAGCGCGGTGTTGGCAGATAGACAGACAGACAGACAACCAGAACAAGCATTTAGGGTGATCGTGCGTTGGTTTTATTATTTGTTTTTAGTAAGTTATTGCTGTTGATCTCACAACAAAACGGGAGCTATTATGAAACTGATAGGTTTTTTTTATCCTACACAATTAACACCGGCTTAACTTACCGATCGTTAGAGCACTAGTTTTTTCCGTTAATTTTGAAGCACCATCATATTGCACAAATGATTGTTGATGTTGTAGATGCGAGCGTAAATTGTTACATTAATTTTAGCTTAGTTTCTATCCATTCCGCATTGTAATAGTAGCAAAAACCGCACCTTTCGTGCAGTTTTCTTTAACTTTTTCAGTTTGATTTATACCATTTTTCTGAACAAAAGATCAAAGTAACTCGTAATGATTGAAGAAAGGAAAATAACGGCCATAATGGTTAAAAATTGCAAATACTTAATGTAAGGAAGCGTACGCAAGCAGCGTAAAGGCAGGCAAAAANGGGTACAGATAGAACAAGATTCGGTTCCATTGGAACCTGGGGGGGGTTGCCAAATTCCAGAAAGGCTTAAAGGGCTTCACAGTGAACTTGTTGAGTACTNNGCCGTCTTAAAAGGTTTTTCANACTGNTCTGGGNGGGAATTCCCACATTGGCCCCTGGTAACCAGGAATTACANACG]

[+] EMBL BX468849             [GGCAGAATCGGCACGTGGACATCACGTTAATTGAGGGATCAATAGCGCGGTGTTGGCAGATAGACAGACAGACAGACAACCAGAACAAGCATTTAGGGTGATCGTGCGTTGGTTTTATTATTTGTTTTTAGTAAGTTATTGCTGTTGATCTCACAACAAAACGGGAGCTATTATGAAACTGATAGGTTTTTTTTATCCTACACAATTAACACCGGCTTAACTTACCGATCGTTAGAGCACTAGTTTTTTCCGTTAATTTTGAAGCACCATCATATTGCACAAATGATTGTTGATGTTGTAGATGCGAGCGTAAATTGTTACATTAATTTTAGCTTAGTTTCTATCCATTCCGCATTGTAATAGTAGCAAAAACCGCACCTTTCGTGCAGTTTTCTTTAACTTTTTCAGTTTGATTTATACCATTTTTCTGAACAAAAGATCAAAGTAACTCGTAATGATTGAAGAAAGGAAAATAACGGCCATAATGGTTAAAAATTGCAAATACTTAATGTAAGGAAGCGTACGCAAGCAGCGTAAAGGCAGGCAAAAANGGGTACAGATAGAACAAGATTCGGTTCCATTGGAACCTGGGGGGGGTTGCCAAATTCCAGAAAGGCTTAAAGGGCTTCACAGTGAACTTGTTGAGTACTNNGCCGTCTTAAAAGGTTTTTCANACTGNTCTGGGNGGGAATTCCCACATTGGCCCCTGGTAACCAGGAATTACANACG]




>consensus_5440#1
GGCAGAATCGGCACGTGGACATCACGTTAATTGAGGGATCAATAGCGCGGTGTTGGCAGA
TAGACAGACAGACAGACAACCAGAACAAGCATTTAGGGTGATCGTGCGTTGGTTTTATTA
TTTGTTTTTAGTAAGTTATTGCTGTTGATCTCACAACAAAACGGGAGCTATTATGAAACT
GATAGGTTTTTTTTATCCTACACAATTAACACCGGCTTAACTTACCGATCGTTAGAGCAC
TAGTTTTTTCCGTTAATTTTGAAGCACCATCATATTGCACAAATGATTGTTGATGTTGTA
GATGCGAGCGTAAATTGTTACATTAATTTTAGCTTAGTTTCTATCCATTCCGCATTGTAA
TAGTAGCAAAAACCGCACCTTTCGTGCAGTTTTCTTTAACTTTTTCAGTTTGATTTATAC
CATTTTTCTGAACAAAAGATCAAAGTAACTCGTAATGATTGAAGAAAGGAAAATAACGGC
CATAATGGTTAAAAATTGCAAATACTTAATGTAAGGAAGCGTACGCAAGCAGCGTAAAGG
CAGGCAAAAANGGGTACAGATAGAACAAGATTCGGTTCCATTGGAACCTGGGGGGGGTTG
CCAAATTCCAGAAAGGCTTAAAGGGCTTCACAGTGAACTTGTTGAGTACTNNGCCGTCTT
AAAAGGTTTTTCANACTGNTCTGGGNGGGAATTCCCACATTGGCCCCTGGTAACCAGGAA
TTACANACG

consensusID : consensus_5440#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 513
fasta sequence

                              [GGCCCAGGACTTNACGAGGCAGCCGATTGGCGCGGAGCAGCAATTCGTCCGCTGCGACACAAGTCGCTGATACGNGTGGAGGAAATGCACCCCAAGCGGGACACTGTTCAGCATCAGCATATTCCCAGCCGACCGTTCTTTGTGGAGCGGATGAACGAGCACCTGAAGAGCGAACATCACGTTAATTGAGGGATTAATAGCGCGGTGTTGGCAGATAGACAGACAGACAGACAACCAGAACAAGCATTTAGGGTGATCGTGCGTTGGTTTTATTATTTGTTTTTAGTAAGTTATTGCTGTTGATCTCACAACAAAACGGGAGCTATTATGAAACTGAATGGTTTTTTTTATCCTACACAATTAACACCGGCTTAACTTACCGATCGTTAGAGCACTAGTTTTTTCCGTTAATTTTGAAGCACCATCATATTGCACAAATGATTGTTGATGTTGTAGATGCGAGCGTAAATTGTTACATTAATTTTNAGCTTAGTTTCTATCCATTCCGCATTG]

[+] EMBL AL934768             [GGCCCAGGACTTNACGAGGCAGCCGATTGGCGCGGAGCAGCAATTCGTCCGCTGCGACACAAGTCGCTGATACGNGTGGAGGAAATGCACCCCAAGCGGGACACTGTTCAGCATCAGCATATTCCCAGCCGACCGTTCTTTGTGGAGCGGATGAACGAGCACCTGAAGAGCGAACATCACGTTAATTGAGGGATTAATAGCGCGGTGTTGGCAGATAGACAGACAGACAGACAACCAGAACAAGCATTTAGGGTGATCGTGCGTTGGTTTTATTATTTGTTTTTAGTAAGTTATTGCTGTTGATCTCACAACAAAACGGGAGCTATTATGAAACTGAATGGTTTTTTTTATCCTACACAATTAACACCGGCTTAACTTACCGATCGTTAGAGCACTAGTTTTTTCCGTTAATTTTGAAGCACCATCATATTGCACAAATGATTGTTGATGTTGTAGATGCGAGCGTAAATTGTTACATTAATTTTNAGCTTAGTTTCTATCCATTCCGCATTG]




>consensus_5440#2
GGCCCAGGACTTNACGAGGCAGCCGATTGGCGCGGAGCAGCAATTCGTCCGCTGCGACAC
AAGTCGCTGATACGNGTGGAGGAAATGCACCCCAAGCGGGACACTGTTCAGCATCAGCAT
ATTCCCAGCCGACCGTTCTTTGTGGAGCGGATGAACGAGCACCTGAAGAGCGAACATCAC
GTTAATTGAGGGATTAATAGCGCGGTGTTGGCAGATAGACAGACAGACAGACAACCAGAA
CAAGCATTTAGGGTGATCGTGCGTTGGTTTTATTATTTGTTTTTAGTAAGTTATTGCTGT
TGATCTCACAACAAAACGGGAGCTATTATGAAACTGAATGGTTTTTTTTATCCTACACAA
TTAACACCGGCTTAACTTACCGATCGTTAGAGCACTAGTTTTTTCCGTTAATTTTGAAGC
ACCATCATATTGCACAAATGATTGTTGATGTTGTAGATGCGAGCGTAAATTGTTACATTA
ATTTTNAGCTTAGTTTCTATCCATTCCGCATTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5440#0      ------------------------------------------------------------
consensus_5440#1      ------------------------------------------------------------
consensus_5440#2      GGCCCAGGACTTNACGAGGCAGCCGATTGGCGCGGAGCAGCAATTCGTCCGCTGCGACAC 60
                                                                                  

consensus_5440#0      ------------------------------------------------------------
consensus_5440#1      ------------------------------------------------------------
consensus_5440#2      AAGTCGCTGATACGNGTGGAGGAAATGCACCCCAAGCGGGACACTGTTCAGCATCAGCAT 120
                                                                                  

consensus_5440#0      ----------------------------------------------------TCCTCGAG 8
consensus_5440#1      -----------------------------------GGCAGAATCGGCACGTGGACATCAC 25
consensus_5440#2      ATTCCCAGCCGACCGTTCTTTGTGGAGCGGATGAACGAGCACCTGAAGAGCGAACATCAC 180
                                                                            *   * 

consensus_5440#0      AACTGTTGGCCTACTGGTTGCGCGGTGTTTACAGATAGACAGACAGACA----ACCAGAA 64
consensus_5440#1      GTTAATTGAGGGATCAATAGCGCGGTGTTGGCAGATAGACAGACAGACAGACAACCAGAA 85
consensus_5440#2      GTTAATTGAGGGATTAATAGCGCGGTGTTGGCAGATAGACAGACAGACAGACAACCAGAA 240
                           ***    *    * **********  ******************    *******

consensus_5440#0      CAAGCATTTAGAGTAATCGTGCGTTGGTTTTATTTTTTGTTTTTAGTAAGTTATTGCTGT 124
consensus_5440#1      CAAGCATTTAGGGTGATCGTGCGTTGGTTTTATTATTTGTTTTTAGTAAGTTATTGCTGT 145
consensus_5440#2      CAAGCATTTAGGGTGATCGTGCGTTGGTTTTATTATTTGTTTTTAGTAAGTTATTGCTGT 300
                      *********** ** ******************* *************************

consensus_5440#0      TGATCTCACAACAAAACAGGAGCTATTATGAAACTGAATGGTTTCATAATACCTATCCTA 184
consensus_5440#1      TGATCTCACAACAAAACGGGAGCTATTATGAAACTGATAGGTTT-----TTTTTATCCTA 200
consensus_5440#2      TGATCTCACAACAAAACGGGAGCTATTATGAAACTGAATGGTTT-----TTTTTATCCTA 355
                      ***************** *******************  *****     *   *******

consensus_5440#0      AACAATTAACACCGGCTTAACTTACCGATCGTTAGAGCACTAGTTTTTTCCGTTAATTTT 244
consensus_5440#1      CACAATTAACACCGGCTTAACTTACCGATCGTTAGAGCACTAGTTTTTTCCGTTAATTTT 260
consensus_5440#2      CACAATTAACACCGGCTTAACTTACCGATCGTTAGAGCACTAGTTTTTTCCGTTAATTTT 415
                       ***********************************************************

consensus_5440#0      GAAGCACCATCATATTGCACAAATGATTGTTGATGTTGTAGATGCGAGCGTAAATTGTTA 304
consensus_5440#1      GAAGCACCATCATATTGCACAAATGATTGTTGATGTTGTAGATGCGAGCGTAAATTGTTA 320
consensus_5440#2      GAAGCACCATCATATTGCACAAATGATTGTTGATGTTGTAGATGCGAGCGTAAATTGTTA 475
                      ************************************************************

consensus_5440#0      CATTAATTTTA-GCTTAGTTTCTATCCATTCCACATTGTAATAGTAGCTAAAACCGCACC 363
consensus_5440#1      CATTAATTTTA-GCTTAGTTTCTATCCATTCCGCATTGTAATAGTAGCAAAAACCGCACC 379
consensus_5440#2      CATTAATTTTNAGCTTAGTTTCTATCCATTCCGCATTG---------------------- 513
                      **********  ******************** *****                      

consensus_5440#0      TTTCGTGCAGTTTTCTTTAACTTTTTCAGTTTGATTTATACCATTTTACTGAACAAAAGA 423
consensus_5440#1      TTTCGTGCAGTTTTCTTTAACTTTTTCAGTTTGATTTATACCATTTTTCTGAACAAAAGA 439
consensus_5440#2      ------------------------------------------------------------
                                                                                  

consensus_5440#0      TCAAACTAACTCGTAATGATTGAAGAAAGGAAAATAGAATAACGGCCATAATGGTTAAAA 483
consensus_5440#1      TCAAAGTAACTCGTAATGATTGAAGAAAGGAAA-----ATAACGGCCATAATGGTTAAAA 494
consensus_5440#2      ------------------------------------------------------------
                                                                                  

consensus_5440#0      -TTGCAA-TACTTAATGTAAGGAAGCGTACGCAAGCAGCGTAA-GGCAGCAAAAGGTAGA 540
consensus_5440#1      ATTGCAAATACTTAATGTAAGGAAGCGTACGCAAGCAGCGTAAAGGCAGGCAAAAANGGG 554
consensus_5440#2      ------------------------------------------------------------
                                                                                  

consensus_5440#0      TAGAACAAATCGTTCATGACTGGGGGTGCAATCAGGTTAATTGTTTTTTTAAGTTTAATT 600
consensus_5440#1      TA---CAGATAGAACAAGATTCGG--TTCCATTGGA--ACCTGGGGGGGGTTGCCAAATT 607
consensus_5440#2      ------------------------------------------------------------
                                                                                  

consensus_5440#0      TTAGGGATTCACATGCCCTGTAACAGATAACG-ACAGAGTACAGAACAATTTCATTA--- 656
consensus_5440#1      CCAGAAAGGCTTAAAGGGCTTCACAGTGAACTTGTTGAGTACTNNGCCGTCTTAAAAGGT 667
consensus_5440#2      ------------------------------------------------------------
                                                                                  

consensus_5440#0      TTTTGGCATAAAGTAAACGTAGACTGATTTTGTTGATCGTAATGGAACAAGGATGGAACA 716
consensus_5440#1      TTTTCANACTGNTCTGGGNGGGAATTCCCACATTGGCCCCTGGTAACCAGGAATTACANA 727
consensus_5440#2      ------------------------------------------------------------
                                                                                  

consensus_5440#0      AAGGGACAGGATTATTGTGTGTTAGAATTAGCATTGATTGCTGTATTGTACGTGTGAATT 776
consensus_5440#1      CG---------------------------------------------------------- 729
consensus_5440#2      ------------------------------------------------------------
                                                                                  

consensus_5440#0      GGATGTGTTATTTTTTCACAAAACGTTTTGGACTACTAAACACTTTGATTGGAATCATAA 836
consensus_5440#1      ------------------------------------------------------------
consensus_5440#2      ------------------------------------------------------------
                                                                                  

consensus_5440#0      AAAAAAAAAAAAAAAAGGCCACATGTGCCCGGGC 870
consensus_5440#1      ----------------------------------
consensus_5440#2      ----------------------------------