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Anopheles gambiae
cluster # 5448 cluster # 5448       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5448#0 length = 1527 sequences # 3  
consensus_5448#1 length = 537 sequences # 1  

consensusID : consensus_5448#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1527
fasta sequence
                              [TCCTGTGGCTTTCTGTGGGTGTTGCAAAGGCGGATGGTGGGGCAAATTTAATGTCAACCATCTCAACCATCTGTGAAAAGAAAACGAGAGTGTCGCGCATTTATCAAAATTCAAAAATATTAACTCTAAATTGAACACCGATTAAATTTAATGGAACACCACCATGGTGGGTGGGTGGTTAAGCGATTAAAAAAAAAACAAACACACACACACACTCGTTTCGGTAACTATTGGCTGTGATTTGGATCAGAAATAATGCACACACTAACATACACATACACACACCCACACACATTTTTAGGCGAAACGTTAAGAAATTGTATTAAGAGTTTTCTACCGCAGCGCGGAACAGGATGGGTGTAGAAAGCGCGTAACAGGACACCGTTAGTTTAAGTATGAAATGTTCATTTTCGGTTTTTCGGTTTTCGGCCAGCACCACTTGCTTGACGAGAGCAGCAAAAGACATTCGTTTAGGTAATGCGAGAAGGAAACAAAGAAGAAAAAAAACACACACACAAACACGGAAAGGAAACGAAACTTCAAAATTTACCAAAAAAAAAAAACAAATTATATATCTGTCTCTTTAACTCTTCGGCCGATCTCTTCCTACCGTCTCCGTTCCTTCCACGCTGGGGGGGAGGGCGAGATACGATAGAAAAGACGGAAGGCAGCTGCAGCAGTCAAATTCCATCAAGACAGCAGCAGCAGCAGCAGTCAAATTCCAACTAGATTTTGAGAGAGGGAGAGAGACATTGCAAAGGAGAGCTAAATTTTTAAACCCAAATCAAACCAAATTTACAATCGCAAATTTCGATACGCTTCTTTTTGGCTTTACTATATTGGATAATTAGGCGAGAGGGGGAGGCAAAATTTTTTGTAACAAAAAGAAAGGGAGAGAAGAAAAAAGAAACAAAATATGAAACTCATTGGATCTCAGTATGATAACGGCATGTGATCAGTTTTGTTTTTCTTTTGAAAACGAAGATATTAAGCAGTATCGTAGACATTTTCATAAGGAGGCGGGGCGTGTATTTAGGCATAAAGGAAACATACGAACTAAATTCTAAATTTAAAATTTGCGGTTAAATTTTTACCTTTTACCTGTTAATCGTTTTTTTATTTGTTTTCGTTTTGGAAATACTTCTTTTGGGCGTCACAACACACTCTCAAACAAGGGAATTTATGGCGTGGTTGAGTAAGCAATGAATAAGAGTGCAGAGGAGCAAATTAAAAAGAGAGAGAGAGAGAGACATATATACTAAACACACCAATTGTGATTCTTTCGGCCATATTTTAAAAACGTTTTCGTTTTCTTAGTCAAAATTTGTTAACGAATAGAAAAAAAAATTGATACCAAATTATGAACGGGGCGCGGGAGCGTCCCCGCCCCGGGCGGCAATCCCAAATGTGATCCTCAAGCAAGTGATTCAAAATTGTAGCGCGCTCGCGTGTGTCCTGTTATTTGGGTTTAAGAAAGTTCGTAGCGAGCGTGTAGTGAGCGGCGGTACATTAGCGTTTAATTATTAT]

[+] EMBL BM633994             [TCCTGTGGCTTTCTGTGGGTGTTGCAAAGGCGGATGGTGGGGCAAATTTAATGTCAACCATCTCAACCATCTGTGAAAAGAAAACGAGAGTGTCGCGCATTTATCAAAATTCAAAAATATTAACTCTAAATTGAACACCGATTAAATTTAATGGAACACCACCATGGTGGGTGGGTGGTTAAGCGATTAAAAAAAAAACAAACACACACACACACTCGTTTCGGTAACTATTGGCTGTGATTTGGATCAGAAATAATGCACACACTAACATACACATACACACACCCACACACATTTTTAGGCGAAACGTTAAGAAATTGTATTAAGAGTTTTCTACCGCAGCGCGGAACAGGATGGGTGTAGAAAGCGCGTAACAGGACACCGTTAGTTTAAGTATGAAATGTTCATTTTCGGTTTTTCGGTTTTCGGCCAGCACCACTTGCTTGACGAGAGCAGCAAAAGACATTCGTTTAGGTAATGCGAGAAGGAAACAAAGAAGAAAAAAAACACACACACAAACACGGAAAGGAAACGAAACTTCAAAATTTACC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL BM574982             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ccgAAAAGACATTCGTTTAGGTAATGCGAGAAGGAAACAAAGAAGAAAAAAAACACACACACAAACACGGAAAGGAAACGAAACTTCAAAATTTACCAAAAAAAAAAAACAAATTATATATCTGTCTCTTTAACTCTTCGGCCGATCTCTTCCTACCGTCTCCGTTCCTTCCACGCTGGGGGGGAGGGCGAGATACGATAGAAAAGACGGAAGGCAGCTGCAGCAGTCAAATTCCATCAAGACAGCAGCAGCAGCAGCAGTCAAATTCCAACTAGATTTTGAGAGAGGGAGAGAGACATTGCAAAGGAGAGCTAAATTTTTAAACCCAAATCAAACCAAATTTACAATCGCAAATTTCGATACGCTTCTTTTTGGCTTTACTATATTGGATAATTAGGCGAGAGGGGGAGGCAAAATTTTTTGTAACAAAAAGAAAGGGAGAGAAGAAAAAAGAAACAAAATATGAAACTCATTGGATCTCAGTATGATAACGGCATGTGATCAGTTTTGTTTTTCTTTTGAAAACGAAGATATTAAGCAGTATCGTAGACATTTTCATAAGGAGGCGGGGCGTGTATTTAGGCATAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BM625305             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ccgCAAAATATGAAACTCATTGGATCTCAGTATGATAACGGCATGTGATCAGTTTTGTTTTTCTTTTGAAAACGAAGATATTAAGCAGTATCGTAGACATTTTCATAAGGAGGCGGGGCGTGTATTTAGGCATAAAGGAAACATACGAACTAAATTCTAAATTTAAAATTTGCGGTTAAATTTTTACCTTTTACCTGTTAATCGTTTTTTTATTTGTTTTCGTTTTGGAAATACTTCTTTTGGGCGTCACAACACACTCTCAAACAAGGGAATTTATGGCGTGGTTGAGTAAGCAATGAATAAGAGTGCAGAGGAGCAAATTAAAAAGAGAGAGAGAGAGAGACATATATACTAAACACACCAATTGTGATTCTTTCGGCCATATTTTAAAAACGTTTTCGTTTTCTTAGTCAAAATTTGTTAACGAATAGAAAAAAAAATTGATACCAAATTATGAACGGGGCGCGGGAGCGTCCCCGCCCCGGGCGGCAATCCCAAATGTGATCCTCAAGCAAGTGATTCAAAATTGTAGCGCGCTCGCGTGTGTCCTGTTATTTGGGTTTAAGAAAGTTCGTAGCGAGCGTGTAGTGAGCGGCGGTACATTAGCGTTTAATTATTAT]


>consensus_5448#0 TCCTGTGGCTTTCTGTGGGTGTTGCAAAGGCGGATGGTGGGGCAAATTTAATGTCAACCA TCTCAACCATCTGTGAAAAGAAAACGAGAGTGTCGCGCATTTATCAAAATTCAAAAATAT TAACTCTAAATTGAACACCGATTAAATTTAATGGAACACCACCATGGTGGGTGGGTGGTT AAGCGATTAAAAAAAAAACAAACACACACACACACTCGTTTCGGTAACTATTGGCTGTGA TTTGGATCAGAAATAATGCACACACTAACATACACATACACACACCCACACACATTTTTA GGCGAAACGTTAAGAAATTGTATTAAGAGTTTTCTACCGCAGCGCGGAACAGGATGGGTG TAGAAAGCGCGTAACAGGACACCGTTAGTTTAAGTATGAAATGTTCATTTTCGGTTTTTC GGTTTTCGGCCAGCACCACTTGCTTGACGAGAGCAGCAAAAGACATTCGTTTAGGTAATG CGAGAAGGAAACAAAGAAGAAAAAAAACACACACACAAACACGGAAAGGAAACGAAACTT CAAAATTTACCAAAAAAAAAAAACAAATTATATATCTGTCTCTTTAACTCTTCGGCCGAT CTCTTCCTACCGTCTCCGTTCCTTCCACGCTGGGGGGGAGGGCGAGATACGATAGAAAAG ACGGAAGGCAGCTGCAGCAGTCAAATTCCATCAAGACAGCAGCAGCAGCAGCAGTCAAAT TCCAACTAGATTTTGAGAGAGGGAGAGAGACATTGCAAAGGAGAGCTAAATTTTTAAACC CAAATCAAACCAAATTTACAATCGCAAATTTCGATACGCTTCTTTTTGGCTTTACTATAT TGGATAATTAGGCGAGAGGGGGAGGCAAAATTTTTTGTAACAAAAAGAAAGGGAGAGAAG AAAAAAGAAACAAAATATGAAACTCATTGGATCTCAGTATGATAACGGCATGTGATCAGT TTTGTTTTTCTTTTGAAAACGAAGATATTAAGCAGTATCGTAGACATTTTCATAAGGAGG CGGGGCGTGTATTTAGGCATAAAGGAAACATACGAACTAAATTCTAAATTTAAAATTTGC GGTTAAATTTTTACCTTTTACCTGTTAATCGTTTTTTTATTTGTTTTCGTTTTGGAAATA CTTCTTTTGGGCGTCACAACACACTCTCAAACAAGGGAATTTATGGCGTGGTTGAGTAAG CAATGAATAAGAGTGCAGAGGAGCAAATTAAAAAGAGAGAGAGAGAGAGACATATATACT AAACACACCAATTGTGATTCTTTCGGCCATATTTTAAAAACGTTTTCGTTTTCTTAGTCA AAATTTGTTAACGAATAGAAAAAAAAATTGATACCAAATTATGAACGGGGCGCGGGAGCG TCCCCGCCCCGGGCGGCAATCCCAAATGTGATCCTCAAGCAAGTGATTCAAAATTGTAGC GCGCTCGCGTGTGTCCTGTTATTTGGGTTTAAGAAAGTTCGTAGCGAGCGTGTAGTGAGC GGCGGTACATTAGCGTTTAATTATTAT



consensusID : consensus_5448#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 537
fasta sequence
                              [CCGAAAATAAACGAAAACTCAAATCTAACGCAAGGAAAAAAACACACACACACTCGTTTCGGTAACTATTGGCTGTGATTTGGATCAGAAATAATGCACACACTAACATACACACACACACCCACACACATTTTTAGGCGAAACGTTAAGAAATTGTATTAAGAGTTTTCTACCGCAGCGCGGAACAGGATGGCTGTAGAAAGCGCGTAACAGGACACCGTTAGTTTAAGTATGAAATGTTCATTTTCGGTTTTTCGGTTTTCGGCCAGCACCACTTGCTTGACGAGAGCAGCAAAAGACATTCGTTTAGGTAATGCGAGAAGGAAACAAAGAAGAAAAAAAAAACACACACAAACACGGAAAGGAAACGAAACTTCAAAATTTACCAAAAAAAAAAAAAAACAAATTATATATCTGTCTCTTTAACTCTTCGGCCGGTCTCTTCCTACCGTCTCCGTTCCTTCCACGCTGGGGGAGGGCGAGATACGATAGAAAAGACGGAAGGCAGCTGCAGCAGTCAAATTCCATCAAGACAGC]

[+] EMBL BM610770             [CCGAAAATAAACGAAAACTCAAATCTAACGCAAGGAAAAAAACACACACACACTCGTTTCGGTAACTATTGGCTGTGATTTGGATCAGAAATAATGCACACACTAACATACACACACACACCCACACACATTTTTAGGCGAAACGTTAAGAAATTGTATTAAGAGTTTTCTACCGCAGCGCGGAACAGGATGGCTGTAGAAAGCGCGTAACAGGACACCGTTAGTTTAAGTATGAAATGTTCATTTTCGGTTTTTCGGTTTTCGGCCAGCACCACTTGCTTGACGAGAGCAGCAAAAGACATTCGTTTAGGTAATGCGAGAAGGAAACAAAGAAGAAAAAAAAAACACACACAAACACGGAAAGGAAACGAAACTTCAAAATTTACCAAAAAAAAAAAAAAACAAATTATATATCTGTCTCTTTAACTCTTCGGCCGGTCTCTTCCTACCGTCTCCGTTCCTTCCACGCTGGGGGAGGGCGAGATACGATAGAAAAGACGGAAGGCAGCTGCAGCAGTCAAATTCCATCAAGACAGC]


>consensus_5448#1 CCGAAAATAAACGAAAACTCAAATCTAACGCAAGGAAAAAAACACACACACACTCGTTTC GGTAACTATTGGCTGTGATTTGGATCAGAAATAATGCACACACTAACATACACACACACA CCCACACACATTTTTAGGCGAAACGTTAAGAAATTGTATTAAGAGTTTTCTACCGCAGCG CGGAACAGGATGGCTGTAGAAAGCGCGTAACAGGACACCGTTAGTTTAAGTATGAAATGT TCATTTTCGGTTTTTCGGTTTTCGGCCAGCACCACTTGCTTGACGAGAGCAGCAAAAGAC ATTCGTTTAGGTAATGCGAGAAGGAAACAAAGAAGAAAAAAAAAACACACACAAACACGG AAAGGAAACGAAACTTCAAAATTTACCAAAAAAAAAAAAAAACAAATTATATATCTGTCT CTTTAACTCTTCGGCCGGTCTCTTCCTACCGTCTCCGTTCCTTCCACGCTGGGGGAGGGC GAGATACGATAGAAAAGACGGAAGGCAGCTGCAGCAGTCAAATTCCATCAAGACAGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5448#0      TCCTGTGGCTTTCTGTGGGTGTTGCAAAGGCGGATGGTGGGGCAAATTTAATGTCAACCA 60
consensus_5448#1      ------------------------------------------------------------
                                                                                  

consensus_5448#0      TCTCAACCATCTGTGAAAAGAAAACGAGAGTGTCGCGCATTTATCAAAATTCAAAAATAT 120
consensus_5448#1      ------------------------------------------------------------
                                                                                  

consensus_5448#0      TAACTCTAAATTGAACACCGATTAAATTTAATGGAACACCACCATGGTGGGTGGGTGGTT 180
consensus_5448#1      ----------------------------------------CCGAAAATAAACGAAAACTC 20
                                                               * *   *    *     * 

consensus_5448#0      AAGCGATTAAAAAAAAAACAAACACACACACACACTCGTTTCGGTAACTATTGGCTGTGA 240
consensus_5448#1      AAAT--CTAACGCAAGGAAAAAAACACACACACACTCGTTTCGGTAACTATTGGCTGTGA 78
                      **     ***   **  * *** *************************************

consensus_5448#0      TTTGGATCAGAAATAATGCACACACTAACATACACATACACACACCCACACACATTTTTA 300
consensus_5448#1      TTTGGATCAGAAATAATGCACACACTAACATACACA--CACACACCCACACACATTTTTA 136
                      ************************************  **********************

consensus_5448#0      GGCGAAACGTTAAGAAATTGTATTAAGAGTTTTCTACCGCAGCGCGGAACAGGATGGGTG 360
consensus_5448#1      GGCGAAACGTTAAGAAATTGTATTAAGAGTTTTCTACCGCAGCGCGGAACAGGATGGCTG 196
                      ********************************************************* **

consensus_5448#0      TAGAAAGCGCGTAACAGGACACCGTTAGTTTAAGTATGAAATGTTCATTTTCGGTTTTTC 420
consensus_5448#1      TAGAAAGCGCGTAACAGGACACCGTTAGTTTAAGTATGAAATGTTCATTTTCGGTTTTTC 256
                      ************************************************************

consensus_5448#0      GGTTTTCGGCCAGCACCACTTGCTTGACGAGAGCAGCAAAAGACATTCGTTTAGGTAATG 480
consensus_5448#1      GGTTTTCGGCCAGCACCACTTGCTTGACGAGAGCAGCAAAAGACATTCGTTTAGGTAATG 316
                      ************************************************************

consensus_5448#0      CGAGAAGGAAACAAAGAAGAAAAAAAACACACACACAAACACGGAAAGGAAACGAAACTT 540
consensus_5448#1      CGAGAAGGAAACAAAGAAGAAAAAAAAAACACACACAAACACGGAAAGGAAACGAAACTT 376
                      *************************** ********************************

consensus_5448#0      CAAAATTTACCAAAAAAAAAAAA---CAAATTATATATCTGTCTCTTTAACTCTTCGGCC 597
consensus_5448#1      CAAAATTTACCAAAAAAAAAAAAAAACAAATTATATATCTGTCTCTTTAACTCTTCGGCC 436
                      ***********************   **********************************

consensus_5448#0      GATCTCTTCCTACCGTCTCCGTTCCTTCCACGCTGGGGGGGAGGGCGAGATACGATAGAA 657
consensus_5448#1      GGTCTCTTCCTACCGTCTCCGTTCCTTCCACGCTGGGG--GAGGGCGAGATACGATAGAA 494
                      * ************************************  ********************

consensus_5448#0      AAGACGGAAGGCAGCTGCAGCAGTCAAATTCCATCAAGACAGCAGCAGCAGCAGCAGTCA 717
consensus_5448#1      AAGACGGAAGGCAGCTGCAGCAGTCAAATTCCATCAAGACAGC----------------- 537
                      *******************************************                 

consensus_5448#0      AATTCCAACTAGATTTTGAGAGAGGGAGAGAGACATTGCAAAGGAGAGCTAAATTTTTAA 777
consensus_5448#1      ------------------------------------------------------------
                                                                                  

consensus_5448#0      ACCCAAATCAAACCAAATTTACAATCGCAAATTTCGATACGCTTCTTTTTGGCTTTACTA 837
consensus_5448#1      ------------------------------------------------------------
                                                                                  

consensus_5448#0      TATTGGATAATTAGGCGAGAGGGGGAGGCAAAATTTTTTGTAACAAAAAGAAAGGGAGAG 897
consensus_5448#1      ------------------------------------------------------------
                                                                                  

consensus_5448#0      AAGAAAAAAGAAACAAAATATGAAACTCATTGGATCTCAGTATGATAACGGCATGTGATC 957
consensus_5448#1      ------------------------------------------------------------
                                                                                  

consensus_5448#0      AGTTTTGTTTTTCTTTTGAAAACGAAGATATTAAGCAGTATCGTAGACATTTTCATAAGG 1017
consensus_5448#1      ------------------------------------------------------------
                                                                                  

consensus_5448#0      AGGCGGGGCGTGTATTTAGGCATAAAGGAAACATACGAACTAAATTCTAAATTTAAAATT 1077
consensus_5448#1      ------------------------------------------------------------
                                                                                  

consensus_5448#0      TGCGGTTAAATTTTTACCTTTTACCTGTTAATCGTTTTTTTATTTGTTTTCGTTTTGGAA 1137
consensus_5448#1      ------------------------------------------------------------
                                                                                  

consensus_5448#0      ATACTTCTTTTGGGCGTCACAACACACTCTCAAACAAGGGAATTTATGGCGTGGTTGAGT 1197
consensus_5448#1      ------------------------------------------------------------
                                                                                  

consensus_5448#0      AAGCAATGAATAAGAGTGCAGAGGAGCAAATTAAAAAGAGAGAGAGAGAGAGACATATAT 1257
consensus_5448#1      ------------------------------------------------------------
                                                                                  

consensus_5448#0      ACTAAACACACCAATTGTGATTCTTTCGGCCATATTTTAAAAACGTTTTCGTTTTCTTAG 1317
consensus_5448#1      ------------------------------------------------------------
                                                                                  

consensus_5448#0      TCAAAATTTGTTAACGAATAGAAAAAAAAATTGATACCAAATTATGAACGGGGCGCGGGA 1377
consensus_5448#1      ------------------------------------------------------------
                                                                                  

consensus_5448#0      GCGTCCCCGCCCCGGGCGGCAATCCCAAATGTGATCCTCAAGCAAGTGATTCAAAATTGT 1437
consensus_5448#1      ------------------------------------------------------------
                                                                                  

consensus_5448#0      AGCGCGCTCGCGTGTGTCCTGTTATTTGGGTTTAAGAAAGTTCGTAGCGAGCGTGTAGTG 1497
consensus_5448#1      ------------------------------------------------------------
                                                                                  

consensus_5448#0      AGCGGCGGTACATTAGCGTTTAATTATTAT 1527
consensus_5448#1      ------------------------------
                                                    




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)