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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5448#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1527 fasta sequence
[TCCTGTGGCTTTCTGTGGGTGTTGCAAAGGCGGATGGTGGGGCAAATTTAATGTCAACCATCTCAACCATCTGTGAAAAGAAAACGAGAGTGTCGCGCATTTATCAAAATTCAAAAATATTAACTCTAAATTGAACACCGATTAAATTTAATGGAACACCACCATGGTGGGTGGGTGGTTAAGCGATTAAAAAAAAAACAAACACACACACACACTCGTTTCGGTAACTATTGGCTGTGATTTGGATCAGAAATAATGCACACACTAACATACACATACACACACCCACACACATTTTTAGGCGAAACGTTAAGAAATTGTATTAAGAGTTTTCTACCGCAGCGCGGAACAGGATGGGTGTAGAAAGCGCGTAACAGGACACCGTTAGTTTAAGTATGAAATGTTCATTTTCGGTTTTTCGGTTTTCGGCCAGCACCACTTGCTTGACGAGAGCAGCAAAAGACATTCGTTTAGGTAATGCGAGAAGGAAACAAAGAAGAAAAAAAACACACACACAAACACGGAAAGGAAACGAAACTTCAAAATTTACCAAAAAAAAAAAACAAATTATATATCTGTCTCTTTAACTCTTCGGCCGATCTCTTCCTACCGTCTCCGTTCCTTCCACGCTGGGGGGGAGGGCGAGATACGATAGAAAAGACGGAAGGCAGCTGCAGCAGTCAAATTCCATCAAGACAGCAGCAGCAGCAGCAGTCAAATTCCAACTAGATTTTGAGAGAGGGAGAGAGACATTGCAAAGGAGAGCTAAATTTTTAAACCCAAATCAAACCAAATTTACAATCGCAAATTTCGATACGCTTCTTTTTGGCTTTACTATATTGGATAATTAGGCGAGAGGGGGAGGCAAAATTTTTTGTAACAAAAAGAAAGGGAGAGAAGAAAAAAGAAACAAAATATGAAACTCATTGGATCTCAGTATGATAACGGCATGTGATCAGTTTTGTTTTTCTTTTGAAAACGAAGATATTAAGCAGTATCGTAGACATTTTCATAAGGAGGCGGGGCGTGTATTTAGGCATAAAGGAAACATACGAACTAAATTCTAAATTTAAAATTTGCGGTTAAATTTTTACCTTTTACCTGTTAATCGTTTTTTTATTTGTTTTCGTTTTGGAAATACTTCTTTTGGGCGTCACAACACACTCTCAAACAAGGGAATTTATGGCGTGGTTGAGTAAGCAATGAATAAGAGTGCAGAGGAGCAAATTAAAAAGAGAGAGAGAGAGAGACATATATACTAAACACACCAATTGTGATTCTTTCGGCCATATTTTAAAAACGTTTTCGTTTTCTTAGTCAAAATTTGTTAACGAATAGAAAAAAAAATTGATACCAAATTATGAACGGGGCGCGGGAGCGTCCCCGCCCCGGGCGGCAATCCCAAATGTGATCCTCAAGCAAGTGATTCAAAATTGTAGCGCGCTCGCGTGTGTCCTGTTATTTGGGTTTAAGAAAGTTCGTAGCGAGCGTGTAGTGAGCGGCGGTACATTAGCGTTTAATTATTAT]
[+] EMBL BM633994 [TCCTGTGGCTTTCTGTGGGTGTTGCAAAGGCGGATGGTGGGGCAAATTTAATGTCAACCATCTCAACCATCTGTGAAAAGAAAACGAGAGTGTCGCGCATTTATCAAAATTCAAAAATATTAACTCTAAATTGAACACCGATTAAATTTAATGGAACACCACCATGGTGGGTGGGTGGTTAAGCGATTAAAAAAAAAACAAACACACACACACACTCGTTTCGGTAACTATTGGCTGTGATTTGGATCAGAAATAATGCACACACTAACATACACATACACACACCCACACACATTTTTAGGCGAAACGTTAAGAAATTGTATTAAGAGTTTTCTACCGCAGCGCGGAACAGGATGGGTGTAGAAAGCGCGTAACAGGACACCGTTAGTTTAAGTATGAAATGTTCATTTTCGGTTTTTCGGTTTTCGGCCAGCACCACTTGCTTGACGAGAGCAGCAAAAGACATTCGTTTAGGTAATGCGAGAAGGAAACAAAGAAGAAAAAAAACACACACACAAACACGGAAAGGAAACGAAACTTCAAAATTTACC ]
[+] EMBL BM574982 [ ccgAAAAGACATTCGTTTAGGTAATGCGAGAAGGAAACAAAGAAGAAAAAAAACACACACACAAACACGGAAAGGAAACGAAACTTCAAAATTTACCAAAAAAAAAAAACAAATTATATATCTGTCTCTTTAACTCTTCGGCCGATCTCTTCCTACCGTCTCCGTTCCTTCCACGCTGGGGGGGAGGGCGAGATACGATAGAAAAGACGGAAGGCAGCTGCAGCAGTCAAATTCCATCAAGACAGCAGCAGCAGCAGCAGTCAAATTCCAACTAGATTTTGAGAGAGGGAGAGAGACATTGCAAAGGAGAGCTAAATTTTTAAACCCAAATCAAACCAAATTTACAATCGCAAATTTCGATACGCTTCTTTTTGGCTTTACTATATTGGATAATTAGGCGAGAGGGGGAGGCAAAATTTTTTGTAACAAAAAGAAAGGGAGAGAAGAAAAAAGAAACAAAATATGAAACTCATTGGATCTCAGTATGATAACGGCATGTGATCAGTTTTGTTTTTCTTTTGAAAACGAAGATATTAAGCAGTATCGTAGACATTTTCATAAGGAGGCGGGGCGTGTATTTAGGCATAAA ]
[+] EMBL BM625305 [ ccgCAAAATATGAAACTCATTGGATCTCAGTATGATAACGGCATGTGATCAGTTTTGTTTTTCTTTTGAAAACGAAGATATTAAGCAGTATCGTAGACATTTTCATAAGGAGGCGGGGCGTGTATTTAGGCATAAAGGAAACATACGAACTAAATTCTAAATTTAAAATTTGCGGTTAAATTTTTACCTTTTACCTGTTAATCGTTTTTTTATTTGTTTTCGTTTTGGAAATACTTCTTTTGGGCGTCACAACACACTCTCAAACAAGGGAATTTATGGCGTGGTTGAGTAAGCAATGAATAAGAGTGCAGAGGAGCAAATTAAAAAGAGAGAGAGAGAGAGACATATATACTAAACACACCAATTGTGATTCTTTCGGCCATATTTTAAAAACGTTTTCGTTTTCTTAGTCAAAATTTGTTAACGAATAGAAAAAAAAATTGATACCAAATTATGAACGGGGCGCGGGAGCGTCCCCGCCCCGGGCGGCAATCCCAAATGTGATCCTCAAGCAAGTGATTCAAAATTGTAGCGCGCTCGCGTGTGTCCTGTTATTTGGGTTTAAGAAAGTTCGTAGCGAGCGTGTAGTGAGCGGCGGTACATTAGCGTTTAATTATTAT]
consensusID : consensus_5448#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 537 fasta sequence
[CCGAAAATAAACGAAAACTCAAATCTAACGCAAGGAAAAAAACACACACACACTCGTTTCGGTAACTATTGGCTGTGATTTGGATCAGAAATAATGCACACACTAACATACACACACACACCCACACACATTTTTAGGCGAAACGTTAAGAAATTGTATTAAGAGTTTTCTACCGCAGCGCGGAACAGGATGGCTGTAGAAAGCGCGTAACAGGACACCGTTAGTTTAAGTATGAAATGTTCATTTTCGGTTTTTCGGTTTTCGGCCAGCACCACTTGCTTGACGAGAGCAGCAAAAGACATTCGTTTAGGTAATGCGAGAAGGAAACAAAGAAGAAAAAAAAAACACACACAAACACGGAAAGGAAACGAAACTTCAAAATTTACCAAAAAAAAAAAAAAACAAATTATATATCTGTCTCTTTAACTCTTCGGCCGGTCTCTTCCTACCGTCTCCGTTCCTTCCACGCTGGGGGAGGGCGAGATACGATAGAAAAGACGGAAGGCAGCTGCAGCAGTCAAATTCCATCAAGACAGC]
[+] EMBL BM610770 [CCGAAAATAAACGAAAACTCAAATCTAACGCAAGGAAAAAAACACACACACACTCGTTTCGGTAACTATTGGCTGTGATTTGGATCAGAAATAATGCACACACTAACATACACACACACACCCACACACATTTTTAGGCGAAACGTTAAGAAATTGTATTAAGAGTTTTCTACCGCAGCGCGGAACAGGATGGCTGTAGAAAGCGCGTAACAGGACACCGTTAGTTTAAGTATGAAATGTTCATTTTCGGTTTTTCGGTTTTCGGCCAGCACCACTTGCTTGACGAGAGCAGCAAAAGACATTCGTTTAGGTAATGCGAGAAGGAAACAAAGAAGAAAAAAAAAACACACACAAACACGGAAAGGAAACGAAACTTCAAAATTTACCAAAAAAAAAAAAAAACAAATTATATATCTGTCTCTTTAACTCTTCGGCCGGTCTCTTCCTACCGTCTCCGTTCCTTCCACGCTGGGGGAGGGCGAGATACGATAGAAAAGACGGAAGGCAGCTGCAGCAGTCAAATTCCATCAAGACAGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5448#0 TCCTGTGGCTTTCTGTGGGTGTTGCAAAGGCGGATGGTGGGGCAAATTTAATGTCAACCA 60
consensus_5448#1 ------------------------------------------------------------
consensus_5448#0 TCTCAACCATCTGTGAAAAGAAAACGAGAGTGTCGCGCATTTATCAAAATTCAAAAATAT 120
consensus_5448#1 ------------------------------------------------------------
consensus_5448#0 TAACTCTAAATTGAACACCGATTAAATTTAATGGAACACCACCATGGTGGGTGGGTGGTT 180
consensus_5448#1 ----------------------------------------CCGAAAATAAACGAAAACTC 20
* * * * *
consensus_5448#0 AAGCGATTAAAAAAAAAACAAACACACACACACACTCGTTTCGGTAACTATTGGCTGTGA 240
consensus_5448#1 AAAT--CTAACGCAAGGAAAAAAACACACACACACTCGTTTCGGTAACTATTGGCTGTGA 78
** *** ** * *** *************************************
consensus_5448#0 TTTGGATCAGAAATAATGCACACACTAACATACACATACACACACCCACACACATTTTTA 300
consensus_5448#1 TTTGGATCAGAAATAATGCACACACTAACATACACA--CACACACCCACACACATTTTTA 136
************************************ **********************
consensus_5448#0 GGCGAAACGTTAAGAAATTGTATTAAGAGTTTTCTACCGCAGCGCGGAACAGGATGGGTG 360
consensus_5448#1 GGCGAAACGTTAAGAAATTGTATTAAGAGTTTTCTACCGCAGCGCGGAACAGGATGGCTG 196
********************************************************* **
consensus_5448#0 TAGAAAGCGCGTAACAGGACACCGTTAGTTTAAGTATGAAATGTTCATTTTCGGTTTTTC 420
consensus_5448#1 TAGAAAGCGCGTAACAGGACACCGTTAGTTTAAGTATGAAATGTTCATTTTCGGTTTTTC 256
************************************************************
consensus_5448#0 GGTTTTCGGCCAGCACCACTTGCTTGACGAGAGCAGCAAAAGACATTCGTTTAGGTAATG 480
consensus_5448#1 GGTTTTCGGCCAGCACCACTTGCTTGACGAGAGCAGCAAAAGACATTCGTTTAGGTAATG 316
************************************************************
consensus_5448#0 CGAGAAGGAAACAAAGAAGAAAAAAAACACACACACAAACACGGAAAGGAAACGAAACTT 540
consensus_5448#1 CGAGAAGGAAACAAAGAAGAAAAAAAAAACACACACAAACACGGAAAGGAAACGAAACTT 376
*************************** ********************************
consensus_5448#0 CAAAATTTACCAAAAAAAAAAAA---CAAATTATATATCTGTCTCTTTAACTCTTCGGCC 597
consensus_5448#1 CAAAATTTACCAAAAAAAAAAAAAAACAAATTATATATCTGTCTCTTTAACTCTTCGGCC 436
*********************** **********************************
consensus_5448#0 GATCTCTTCCTACCGTCTCCGTTCCTTCCACGCTGGGGGGGAGGGCGAGATACGATAGAA 657
consensus_5448#1 GGTCTCTTCCTACCGTCTCCGTTCCTTCCACGCTGGGG--GAGGGCGAGATACGATAGAA 494
* ************************************ ********************
consensus_5448#0 AAGACGGAAGGCAGCTGCAGCAGTCAAATTCCATCAAGACAGCAGCAGCAGCAGCAGTCA 717
consensus_5448#1 AAGACGGAAGGCAGCTGCAGCAGTCAAATTCCATCAAGACAGC----------------- 537
*******************************************
consensus_5448#0 AATTCCAACTAGATTTTGAGAGAGGGAGAGAGACATTGCAAAGGAGAGCTAAATTTTTAA 777
consensus_5448#1 ------------------------------------------------------------
consensus_5448#0 ACCCAAATCAAACCAAATTTACAATCGCAAATTTCGATACGCTTCTTTTTGGCTTTACTA 837
consensus_5448#1 ------------------------------------------------------------
consensus_5448#0 TATTGGATAATTAGGCGAGAGGGGGAGGCAAAATTTTTTGTAACAAAAAGAAAGGGAGAG 897
consensus_5448#1 ------------------------------------------------------------
consensus_5448#0 AAGAAAAAAGAAACAAAATATGAAACTCATTGGATCTCAGTATGATAACGGCATGTGATC 957
consensus_5448#1 ------------------------------------------------------------
consensus_5448#0 AGTTTTGTTTTTCTTTTGAAAACGAAGATATTAAGCAGTATCGTAGACATTTTCATAAGG 1017
consensus_5448#1 ------------------------------------------------------------
consensus_5448#0 AGGCGGGGCGTGTATTTAGGCATAAAGGAAACATACGAACTAAATTCTAAATTTAAAATT 1077
consensus_5448#1 ------------------------------------------------------------
consensus_5448#0 TGCGGTTAAATTTTTACCTTTTACCTGTTAATCGTTTTTTTATTTGTTTTCGTTTTGGAA 1137
consensus_5448#1 ------------------------------------------------------------
consensus_5448#0 ATACTTCTTTTGGGCGTCACAACACACTCTCAAACAAGGGAATTTATGGCGTGGTTGAGT 1197
consensus_5448#1 ------------------------------------------------------------
consensus_5448#0 AAGCAATGAATAAGAGTGCAGAGGAGCAAATTAAAAAGAGAGAGAGAGAGAGACATATAT 1257
consensus_5448#1 ------------------------------------------------------------
consensus_5448#0 ACTAAACACACCAATTGTGATTCTTTCGGCCATATTTTAAAAACGTTTTCGTTTTCTTAG 1317
consensus_5448#1 ------------------------------------------------------------
consensus_5448#0 TCAAAATTTGTTAACGAATAGAAAAAAAAATTGATACCAAATTATGAACGGGGCGCGGGA 1377
consensus_5448#1 ------------------------------------------------------------
consensus_5448#0 GCGTCCCCGCCCCGGGCGGCAATCCCAAATGTGATCCTCAAGCAAGTGATTCAAAATTGT 1437
consensus_5448#1 ------------------------------------------------------------
consensus_5448#0 AGCGCGCTCGCGTGTGTCCTGTTATTTGGGTTTAAGAAAGTTCGTAGCGAGCGTGTAGTG 1497
consensus_5448#1 ------------------------------------------------------------
consensus_5448#0 AGCGGCGGTACATTAGCGTTTAATTATTAT 1527
consensus_5448#1 ------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||