cluster # 5451

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Anopheles gambiae
cluster # 5451 cluster # 5451 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5451#0 length = 856 sequences # 2

consensus_5451#1 length = 698 sequences # 2

consensusID : consensus_5451#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 856
fasta sequence

                              [CGGACTTCAAATTACGTTGGTCTTGCCTATACGGGAACGATTTAGAAGATTGTGGAAAATATTGCATTCGCCCAATACGACAGCTGTTTGCAATTTCATTGCATTGAGCAGTATGGATTGGGCACAGAATAATCTATCCTATCCAAAACAGGGTACTTTTGTGTTTTCTCACCATTTGTACCAAGAAAATGGGATAACATTCCAACAGAAAAAGGTCTAACGTTTGCTGCTCTTCGAAGACTTTTTAGAAAATACGTNGAATGTAGGTGTAGTGTATAATTTACCGTAATTTTCGAACAACCAGCGCGCTGCGACCGAGGCAGCGGCCATCGTCAAACATCATCCCACTTTAGGGAGTTCCGTGTATTCTACAGAAAAAAAAACTCCGCAGTGCATCTTCAATAGCCTCAAGCCTCTGCCAAGTGAATCGTTGTTTTCAATTGAAAATCGTCAAGTTCTACGTGTGATATTTGTTTCGCTANCATAGCAACAGGCGAGAACGCAAGATTGTGGGATTCATCTTAAGCGAAAAGATGGTTGTGCAAGTTTTTACGCTCCCATATCTGTGAAACACCGAATAACGGCAGCTTGGCCGATGAAACGTATTACGCGAACCCCCTGATTAGCTCAATCAATTTAAAGATACCTGTGTCGGTGTAATGAGACGGCTTCTTTATTGCAGAACAATTACAGAAAATCTTACCAGCGATAAGATTCAGCAACCGTTTTACGCATGATAGTGCACGATAAACCAATCCATATAAGTCAATAAGTGACGTGGAAAACGTGAATCTGGCTTAAATTTAATGGTCATTGGCTGCCCTGATAAACGTGATAAGTTCTAGNTTCTTACAGT]

[+] EMBL BX624357             [CGGACTTCAAATTACGTTGGTCTTGCCTATACGGGAACGATTTAGAAGATTGTGGAAAATATTGCATTCGCCCAATACGACAGCTGTTTGCAATTTCATTGCATTGAGCAGTATGGATTGGGCACAGAATAATCTATCCTATCCAAAACAGGGTACTTTTGTGTTTTCTCACCATTTGTACCAAGAAAATGGGATAACATTCCAACAGAAAAAGGTCTAACGTTTGCTGCTCTTCGAAGACTTTTTAGAAAATACGTNGAATGTAGGTGTAGTGTATAATTTACCGTAATTTTCGAACAACCAGCGCGCTGCGACCGAGGCAGCGGCCATCGTCAAACATCATCCCACTTTAGGGAGTTCCGTGTATTCTACAGAAAAAAAAACTCCGCAGTGCATCTTCAATAGCCTCAAGCCTCTGCCAAGTGAATCGTTGTTTTCAATTGAAAATCGTCAAGTTCTACGTGTGATATTTGTTTCGCTANCATAG                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BX627719             [                                                   GTGGAAAATATTGCATTCGCCCAATACGACAGCTGTTTGCAATTTCATTGCATTGAGCAGTATGGATTGGGCACAGAATAATCTATCCTATCCAAAACAGGGTACTTTTGTGTTTTCTCACCATTTGTACCAAGAAAATGGGATAACATTCCAACAGAAAAAGGTCTAACGTTTGCTGCTCTTCGAAGACTTTTTAGAAAATACGTTGAATGTAGGTGTAGTGTATAATTTACCGTAATTTTCGAACAACCAGCGCGCTGCGACCGAGGCAGCGGCCATCGTCAAACATCATCCCACTTTAGGGAGTTCCGTGTATCCTACAGAAAAAAAAACTCCGCAGTGCATCTTCAATAGCTTCAAGCATCTGCCAAGTGAATCGTTGTTTTCAATTGAAAATCGTCAAGTTCTACGTGTGATATTTGTTTCGCTACCATAGCAACAGGCGAGAACGCAAGATTGTGGGATTCATCTTAAGCGAAAAGATGGTTGTGCAAGTTTTTACGCTCCCATATCTGTGAAACACCGAATAACGGCAGCTTGGCCGATGAAACGTATTACGCGAACCCCCTGATTAGCTCAATCAATTTAAAGATACCTGTGTCGGTGTAATGAGACGGCTTCTTTATTGCAGAACAATTACAGAAAATCTTACCAGCGATAAGATTCAGCAACCGTTTTACGCATGATAGTGCACGATAAACCAATCCATATAAGTCAATAAGTGACGTGGAAAACGTGAATCTGGCTTAAATTTAATGGTCATTGGCTGCCCTGATAAACGTGATAAGTTCTAGNTTCTTACAGT]




>consensus_5451#0
CGGACTTCAAATTACGTTGGTCTTGCCTATACGGGAACGATTTAGAAGATTGTGGAAAAT
ATTGCATTCGCCCAATACGACAGCTGTTTGCAATTTCATTGCATTGAGCAGTATGGATTG
GGCACAGAATAATCTATCCTATCCAAAACAGGGTACTTTTGTGTTTTCTCACCATTTGTA
CCAAGAAAATGGGATAACATTCCAACAGAAAAAGGTCTAACGTTTGCTGCTCTTCGAAGA
CTTTTTAGAAAATACGTNGAATGTAGGTGTAGTGTATAATTTACCGTAATTTTCGAACAA
CCAGCGCGCTGCGACCGAGGCAGCGGCCATCGTCAAACATCATCCCACTTTAGGGAGTTC
CGTGTATTCTACAGAAAAAAAAACTCCGCAGTGCATCTTCAATAGCCTCAAGCCTCTGCC
AAGTGAATCGTTGTTTTCAATTGAAAATCGTCAAGTTCTACGTGTGATATTTGTTTCGCT
ANCATAGCAACAGGCGAGAACGCAAGATTGTGGGATTCATCTTAAGCGAAAAGATGGTTG
TGCAAGTTTTTACGCTCCCATATCTGTGAAACACCGAATAACGGCAGCTTGGCCGATGAA
ACGTATTACGCGAACCCCCTGATTAGCTCAATCAATTTAAAGATACCTGTGTCGGTGTAA
TGAGACGGCTTCTTTATTGCAGAACAATTACAGAAAATCTTACCAGCGATAAGATTCAGC
AACCGTTTTACGCATGATAGTGCACGATAAACCAATCCATATAAGTCAATAAGTGACGTG
GAAAACGTGAATCTGGCTTAAATTTAATGGTCATTGGCTGCCCTGATAAACGTGATAAGT
TCTAGNTTCTTACAGT

consensusID : consensus_5451#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 698
fasta sequence

                              [CCGGGACGGCAGAATGGAGAAGAAACAGTTGTGCGTTTTTCAATCAGTATCAGCATAAGTAGCAAACGTAGCAAACAAACAAATTTTCACGTCGAGCTCAGTGTGGAATGGAGTGTGTGTGAATGTGTGCGTGATACACCGTGTTGAATGTAGGTGTAGTGTATAATTTACCGTAATTTTCGAACAACCAGCGCGCTGCGACCGAGGCAGCGGCCATCGTCAAACATCATCCCACTTTAGGGAGTTCCGTGTATCCTACAG-AAAAAAAAACTCCGCAGTGCATCTTCAATAGCTTCAAGCATCTGCCAAGTGAATCGTTGTTTTCAATTGAAAATCGTCAAGTTCTACGTGTGATATTTGTTTCGCTACCATAGCAACAGGCGAGAACGCAAGATTGTGGGATTCATCTTAAGCGAAAAGATGGTTGTGCAAGTTTTTACGCTCCCATATCTGTGAAACACCGAATAACGGCAGCTTGGCCGATGAAACGTATTACGCGAACCCCCTGATTAGCTCAATCAATTTAAAGATACCTGTGTCGGTGTAATGAGACGGCTTCTTTATTGCAGGAGAATTACAGTAAATCTTACCAGCGATAAGATTCAGCAACCGTTTTACGCATGATAGTGCACGATAAACCAATCCATATAAGTCAATAAGTGACGTGAAAACGTGAATCTGGCTTAAATTTAAATGGT]

[+] EMBL BM575319             [CCGGGACGGCAGAATGGAGAAGAAACAGTTGTGCGTTTTTCAATCAGTATCAGCATAAGTAGCAAACGTAGCAAACAAACAAATTTTCACGTCGAGCTCAGTGTGGAATGGAGTGTGTGTGAATGTGTGCGTGATACACCGTGTTGAATGTAGGTGTAGTGTATAATTTACCGTAATTTTCGAACAACCAGCGCGCTGCGACCGAGGCAGCGGCCATCGTCAAACATCATCCCACTTTAGGGAGTTCCGTGTATCCTACAG AAAAAAAAACTCCGCAGTGCATCTTCAATAGCTTCAAGCATCTGCCAAGTGAATCGTTGTTTTCAATTGAAAATCGTCAAGTTCTACGTGTGATATTTGTTTCGCTACCATAGCAACAGGCGAGAACGCAAGATTGTGGGATTCATCTTAAGCGAAAAGATGGTTGTGCAAGTTTTTACGCTCCCATATCTGTGAAACACCGAATAACGGCAGCTTGGCCGATGAAACGTATTACGCGAACCCCCTGATTAGCTCAATCAATTTAA                                                                                                                                                                           ]
[+] EMBL BM649391             [                                                         ccgAGCAAACGTAGCAAACAAACAAATTTTCACGTCGAGCTCAGTGTGGAATGGAGTGTGTGTGAATGTGTGCGTGATACACCGTGTTGAATGTAGGTGTAGTGTATAATTTACCGTAATTTTCGAACAACCAGCGCGCTGCGACCGAGGTAGCGGCCATCGTCAAACATCATCCCACTTTAGGGAGTTCCGTGTATCCTACAGAAAAAAAAAACTCCGCAGTGCATCTTCAATAGCTTCAAGCATCTGCCAAGTGAATCGTTGTTTTCAATTGAAAATCGTCAAGTTCTACGTGTGATATTTGTTTCGCTACCATAGCAACAGGCGAGAACGCAAGATTGTGGGATTCATCTTAAGCGAAAAGATGGTTGTGCAAGTTTTTACGCTCCCATATCTGTGAAACACCGAATAACGGCAGCTTGGCCGATGAAACGTATTACGCGAACCCCCTGATTAGCTCAATCAATTTAAAGATACCTGTGTCGGTGTAATGAGACGGCTTCTTTATTGCAGGAGAATTACAGTAAATCTTACCAGCGATAAGATTCAGCAACCGTTTTACGCATGATAGTGCACGATAAACCAATCCATATAAGTCAATAAGTGACGTGAAAACGTGAATCTGGCTTAAATTTAAATGGT]




>consensus_5451#1
CCGGGACGGCAGAATGGAGAAGAAACAGTTGTGCGTTTTTCAATCAGTATCAGCATAAGT
AGCAAACGTAGCAAACAAACAAATTTTCACGTCGAGCTCAGTGTGGAATGGAGTGTGTGT
GAATGTGTGCGTGATACACCGTGTTGAATGTAGGTGTAGTGTATAATTTACCGTAATTTT
CGAACAACCAGCGCGCTGCGACCGAGGCAGCGGCCATCGTCAAACATCATCCCACTTTAG
GGAGTTCCGTGTATCCTACAGAAAAAAAAACTCCGCAGTGCATCTTCAATAGCTTCAAGC
ATCTGCCAAGTGAATCGTTGTTTTCAATTGAAAATCGTCAAGTTCTACGTGTGATATTTG
TTTCGCTACCATAGCAACAGGCGAGAACGCAAGATTGTGGGATTCATCTTAAGCGAAAAG
ATGGTTGTGCAAGTTTTTACGCTCCCATATCTGTGAAACACCGAATAACGGCAGCTTGGC
CGATGAAACGTATTACGCGAACCCCCTGATTAGCTCAATCAATTTAAAGATACCTGTGTC
GGTGTAATGAGACGGCTTCTTTATTGCAGGAGAATTACAGTAAATCTTACCAGCGATAAG
ATTCAGCAACCGTTTTACGCATGATAGTGCACGATAAACCAATCCATATAAGTCAATAAG
TGACGTGAAAACGTGAATCTGGCTTAAATTTAAATGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5451#0      CGGACTTCAAATTACGTTGGTCTTGCCTATACGGGAACGATTTAGAAGATTGTGGAAAAT 60
consensus_5451#1      ------------------------------------------------------------
                                                                                  

consensus_5451#0      ATTGCATTCGCCCAATACGACAGCTGTTTGCAATTTCATTGCATTGAGCAGTATGGATTG 120
consensus_5451#1      --------------------------------------------CCGGGACGGCAGAATG 16
                                                                     * *     ** **

consensus_5451#0      GGCACAGAATAATCTATCCTATCCAAAACAGGGTACTTTTGTGTTTTCTCACCATTTGTA 180
consensus_5451#1      GAGAAGAAACAGTTGTGCGTTTTTCAATCAGTATCAGCATAAGT------AGCAAACGTA 70
                      *  *   ** * *    * * *   ** ***  *     *  **      * **   ***

consensus_5451#0      CCAAGAAAATGGGATAACATTCCAA---CAGAAAAAGGTCTAACGTTTGCTGCTCTTCGA 237
consensus_5451#1      GCAAACAAACAAATTTTCACGTCGAGCTCAGTGTGGAATGGAGTGTGTGTGAATGTGTGC 130
                       ***  ***     *  **   * *   ***       *  *  ** **    * *  * 

consensus_5451#0      AGACTTTTTAGAAAATACGTNGAATGTAGGTGTAGTGTATAATTTACCGTAATTTTCGAA 297
consensus_5451#1      G------TGATACACCGTGTTGAATGTAGGTGTAGTGTATAATTTACCGTAATTTTCGAA 184
                             * * * *    ** ***************************************

consensus_5451#0      CAACCAGCGCGCTGCGACCGAGGCAGCGGCCATCGTCAAACATCATCCCACTTTAGGGAG 357
consensus_5451#1      CAACCAGCGCGCTGCGACCGAGGCAGCGGCCATCGTCAAACATCATCCCACTTTAGGGAG 244
                      ************************************************************

consensus_5451#0      TTCCGTGTATTCTACAGAAAAAAAAACTCCGCAGTGCATCTTCAATAGCCTCAAGCCTCT 417
consensus_5451#1      TTCCGTGTATCCTACAGAAAAAAAAACTCCGCAGTGCATCTTCAATAGCTTCAAGCATCT 304
                      ********** ************************************** ****** ***

consensus_5451#0      GCCAAGTGAATCGTTGTTTTCAATTGAAAATCGTCAAGTTCTACGTGTGATATTTGTTTC 477
consensus_5451#1      GCCAAGTGAATCGTTGTTTTCAATTGAAAATCGTCAAGTTCTACGTGTGATATTTGTTTC 364
                      ************************************************************

consensus_5451#0      GCTANCATAGCAACAGGCGAGAACGCAAGATTGTGGGATTCATCTTAAGCGAAAAGATGG 537
consensus_5451#1      GCTACCATAGCAACAGGCGAGAACGCAAGATTGTGGGATTCATCTTAAGCGAAAAGATGG 424
                      **** *******************************************************

consensus_5451#0      TTGTGCAAGTTTTTACGCTCCCATATCTGTGAAACACCGAATAACGGCAGCTTGGCCGAT 597
consensus_5451#1      TTGTGCAAGTTTTTACGCTCCCATATCTGTGAAACACCGAATAACGGCAGCTTGGCCGAT 484
                      ************************************************************

consensus_5451#0      GAAACGTATTACGCGAACCCCCTGATTAGCTCAATCAATTTAAAGATACCTGTGTCGGTG 657
consensus_5451#1      GAAACGTATTACGCGAACCCCCTGATTAGCTCAATCAATTTAAAGATACCTGTGTCGGTG 544
                      ************************************************************

consensus_5451#0      TAATGAGACGGCTTCTTTATTGCAGAACAATTACAGAAAATCTTACCAGCGATAAGATTC 717
consensus_5451#1      TAATGAGACGGCTTCTTTATTGCAGGAGAATTACAGTAAATCTTACCAGCGATAAGATTC 604
                      ************************* * ******** ***********************

consensus_5451#0      AGCAACCGTTTTACGCATGATAGTGCACGATAAACCAATCCATATAAGTCAATAAGTGAC 777
consensus_5451#1      AGCAACCGTTTTACGCATGATAGTGCACGATAAACCAATCCATATAAGTCAATAAGTGAC 664
                      ************************************************************

consensus_5451#0      GTGGAAAACGTGAATCTGGCTTAAATTTAA-TGGTCATTGGCTGCCCTGATAAACGTGAT 836
consensus_5451#1      GTG-AAAACGTGAATCTGGCTTAAATTTAAATGGT------------------------- 698
                      *** ************************** ****                         

consensus_5451#0      AAGTTCTAGNTTCTTACAGT 856
consensus_5451#1      --------------------