cluster # 5452

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Anopheles gambiae
cluster # 5452 cluster # 5452 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5452#0 length = 752 sequences # 3

consensus_5452#1 length = 178 sequences # 1

consensusID : consensus_5452#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 752
fasta sequence

                              [CCGATTCGGACGCGCGTTTTGTGCTCGCTCGGGTACCACACACCACAACGGCGTGATGAGATAAAACAATAGAATTCCTCCTGCCGTGGGGCTGACTGACAAAACAGCGAGTCAACAGCTCATTTCATCTTCCACATCTTCCGACGATGCAACTACATTCAGTGACAGTTTTATACCCTCCGGTGGTGAAATAGTGAAACAACAAAACGAAACAAAAAAAAAACAAAGCAAAAAATAAACCCAAGTGCAAACTCTAGTGCAAATACCGACTACGTAAAGCCTACAGAGAGCGCGTTGCCAACAGCAGGGCAGCACGAGCACGACGAAAAAAAAAACGCTCTGCGAAACTGTGCGGCAGTTTCCAGCATGATATCCTTTACGATCAAACCAGCACTGGAAGGCGTTAGAACGACGACAGACGGACGTGTGAAGAACGTGCCAACAGCGGTCGCAGTGAAACCGGAAGCAGCAGCAGCAGCAGTCGCACTGTAGTGAGCGGCAGAGAAAGTAATAAAACAATCTACCAAACGCAATCCGAGGGAAGAAAAAAAGGGAAAGAGTTCTGTCTGTCTGCAGCGAGACGAGCGTAGGAAGAGCAAAACCCATCAACTAGCGAAGAAGCAGCAGAACAAGAAAGGGCAACGTT-CCCCCAGCTCCACGCCAGCGAGACAACGGAAATCATTCGATTTTCTCTCGATGAAAATCCAATCGATAAACGAACGGAAAAAGGCTGCCAGCGCCTAAGGAGAGTA]

[+] EMBL BM638511             [CCGATTCGGACGCGCGTTTTGTGCTCGCTCGGGTACCACACACCACAACGGCGTGATGAGATAAAACAATAGAATTCCTCCTGCCGTGGGGCTGACTGACAAAACAGCGAGTCAACAGCTCATTTCATCTTCCACATCTTCCGACGATGCAACTACATTCAGTGACAGTTTTATACCCTCCGGTGGTGAAATAGTGAAACAACAAAACGAAACAAAAAAAAAACAAAGCAAAAAATAAACCCAAGTGCAAACTCTAGTGCAAATACCGACTACGTAAAGCCTACTGAGAGCGCGTTGCCAACAGCAGGGCAGCACGAGCACGACGAAAAAAAAAACGCTCTGCGAAACTGTGCGGCAGTTTCCAGCATGATATCCTTTACGATCAAACCAGCACTGGAAGGCGTTAGAACGACGACAGACGGACGTGTGAAGAACGTGCCAACAGCGGTCGCAGTGAAACCGGAAGCAGCAGCAGCAGCAGTCGCACTGTAGTGAGCGGCAGAGAAAGTAATAAAACAATCTACCAAACGCAATCCGAGGGAAGAAAAAAAGGGAAAGAGTTCTGTCTGTCTGCAGCGAGACGAGCGTAGGAAGAGCAAAACCCATCAACTAGCGAAGAAGCAGCAGAACAAGAA                                                                                                                      ]
[+] EMBL BM635076             [                                                                                      ccgaGCTGACTGACAAAACAGCGAGTCAACAGCTCATTTCATCTTCCACATCTTCCGACGATGCAACTACATTCAGTGACAGTTTTATACCCTCCGGTGGTGAAATAGTGAAACAACAAAACG      AAAAAAAACAAAGCAAAAAATAAACCCAAGTGCAAACTCTAGTGCAAATACCGACTACGTAAAGCCTACAGAGAGCGCGTTGCCAACAGCAGGGCAGCACGAGCACGACGAAAAAAAAAACGCTCTGCGAAACTGTGCGGCAGTTTCCAGCATGATATCCTTTACGATCAAACCAGCACTGGAAGGCGTTAGAACGACGACAGACGGACGTGTGAAGAACGTGCCAACAGCGGTCGCAGTGAAACCGGAAGCAGCAGCAGCAGCAGTCGCACTGTAGTGAGCGGCAGAGAAAGTAATAAAACAATCTACCAAACGCAATCCGAGGGAAGAAAAAAAGGGAAAGAGTTCTGTCTGTCTGCAGCGAGACGAGCGTAGGAAGAGCAAAACCCATCAACTAGCGAAGAAGCAGCAGAACAAGAAAGGGCAACGTTCCCCCCAGCTCCACGCCAGCGAGACAACGGAAATCATTCGATTTTCTCTCGATGAAAATCCAATCGATAAAC                                   ]
[+] EMBL BM651910             [                                                                                                                                                                                                                                                        ccgCTCTAGTGCAAATACCGACTACGTAAAGCCTACAGAGAGCGCGTTGCCAACAGCAGGGCAGCACGAGCACGACGAAAAAAAAAACGCTCTGCGAAACTGTGCGGCAGTTTCCAGCATGATATCCTTTACGATCAAACCAGCACTGGAAGGCGTTAGAACGACGACAGACGGACGTGTGAAGAACGTGCCAACAGCGGTCGCAGTGAAACCGGAAGCAGCAGCAGCAGCAGTCGCACTGTAGTGAGCGGCAGAGAAAGTAATAAAACAATCTACCAAACGCAATCCGAGGGAAGAAAAAAAGGGAAAGAGTTCTGTCTGTCTGCAGCGAGACGAGCGTAGGAAGAGCAAAACCCATCAACTAGCGAAGAAGCAGCAGAACAAGAAAGGGCAACGTT CCCCCAGCTCCACGCCAGCGAGACAACGGAAATCATTCGATTTTCTCTCGATGAAAATCCAATCGATAAACGAACGGAAAAAGGCTGCCAGCGCCTAAGGAGAGTA]




>consensus_5452#0
CCGATTCGGACGCGCGTTTTGTGCTCGCTCGGGTACCACACACCACAACGGCGTGATGAG
ATAAAACAATAGAATTCCTCCTGCCGTGGGGCTGACTGACAAAACAGCGAGTCAACAGCT
CATTTCATCTTCCACATCTTCCGACGATGCAACTACATTCAGTGACAGTTTTATACCCTC
CGGTGGTGAAATAGTGAAACAACAAAACGAAACAAAAAAAAAACAAAGCAAAAAATAAAC
CCAAGTGCAAACTCTAGTGCAAATACCGACTACGTAAAGCCTACAGAGAGCGCGTTGCCA
ACAGCAGGGCAGCACGAGCACGACGAAAAAAAAAACGCTCTGCGAAACTGTGCGGCAGTT
TCCAGCATGATATCCTTTACGATCAAACCAGCACTGGAAGGCGTTAGAACGACGACAGAC
GGACGTGTGAAGAACGTGCCAACAGCGGTCGCAGTGAAACCGGAAGCAGCAGCAGCAGCA
GTCGCACTGTAGTGAGCGGCAGAGAAAGTAATAAAACAATCTACCAAACGCAATCCGAGG
GAAGAAAAAAAGGGAAAGAGTTCTGTCTGTCTGCAGCGAGACGAGCGTAGGAAGAGCAAA
ACCCATCAACTAGCGAAGAAGCAGCAGAACAAGAAAGGGCAACGTTCCCCCAGCTCCACG
CCAGCGAGACAACGGAAATCATTCGATTTTCTCTCGATGAAAATCCAATCGATAAACGAA
CGGAAAAAGGCTGCCAGCGCCTAAGGAGAGTA

consensusID : consensus_5452#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 178
fasta sequence

                              [TTATACCCTCCGGGGGTGAAATAGTGAAACAACAACACGAAAAAAAACAAAGCCAAAAGTAAACCCAAGTGCAAACTCTAGTGCAAATACCGACTACGAAAAGCCTACAGAGAGCGCGTTGCCAACAGCAGGGCAGCACGAGCACGACGATAAGAAAAACGGTCTGCGAAACTGTGCG]

[+] EMBL BM575320             [TTATACCCTCCGGGGGTGAAATAGTGAAACAACAACACGAAAAAAAACAAAGCCAAAAGTAAACCCAAGTGCAAACTCTAGTGCAAATACCGACTACGAAAAGCCTACAGAGAGCGCGTTGCCAACAGCAGGGCAGCACGAGCACGACGATAAGAAAAACGGTCTGCGAAACTGTGCG]




>consensus_5452#1
TTATACCCTCCGGGGGTGAAATAGTGAAACAACAACACGAAAAAAAACAAAGCCAAAAGT
AAACCCAAGTGCAAACTCTAGTGCAAATACCGACTACGAAAAGCCTACAGAGAGCGCGTT
GCCAACAGCAGGGCAGCACGAGCACGACGATAAGAAAAACGGTCTGCGAAACTGTGCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5452#0      CCGATTCGGACGCGCGTTTTGTGCTCGCTCGGGTACCACACACCACAACGGCGTGATGAG 60
consensus_5452#1      ------------------------------------------------------------
                                                                                  

consensus_5452#0      ATAAAACAATAGAATTCCTCCTGCCGTGGGGCTGACTGACAAAACAGCGAGTCAACAGCT 120
consensus_5452#1      ------------------------------------------------------------
                                                                                  

consensus_5452#0      CATTTCATCTTCCACATCTTCCGACGATGCAACTACATTCAGTGACAGTTTTATACCCTC 180
consensus_5452#1      --------------------------------------------------TTATACCCTC 10
                                                                        **********

consensus_5452#0      CGGTGGTGAAATAGTGAAACAACAAAACGAAACAAAAAAAAAACAAAGCAAAAAATAAAC 240
consensus_5452#1      CGGGGGTGAAATAGTGAAACAACAACACGAA------AAAAAACAAAGCCAAAAGTAAAC 64
                      *** ********************* *****      ************ **** *****

consensus_5452#0      CCAAGTGCAAACTCTAGTGCAAATACCGACTACGTAAAGCCTACAGAGAGCGCGTTGCCA 300
consensus_5452#1      CCAAGTGCAAACTCTAGTGCAAATACCGACTACGAAAAGCCTACAGAGAGCGCGTTGCCA 124
                      ********************************** *************************

consensus_5452#0      ACAGCAGGGCAGCACGAGCACGACGAAAAAAAAAACGCTCTGCGAAACTGTGCGGCAGTT 360
consensus_5452#1      ACAGCAGGGCAGCACGAGCACGACGATAAGAAAAACGGTCTGCGAAACTGTGCG------ 178
                      ************************** ** ******* ****************      

consensus_5452#0      TCCAGCATGATATCCTTTACGATCAAACCAGCACTGGAAGGCGTTAGAACGACGACAGAC 420
consensus_5452#1      ------------------------------------------------------------
                                                                                  

consensus_5452#0      GGACGTGTGAAGAACGTGCCAACAGCGGTCGCAGTGAAACCGGAAGCAGCAGCAGCAGCA 480
consensus_5452#1      ------------------------------------------------------------
                                                                                  

consensus_5452#0      GTCGCACTGTAGTGAGCGGCAGAGAAAGTAATAAAACAATCTACCAAACGCAATCCGAGG 540
consensus_5452#1      ------------------------------------------------------------
                                                                                  

consensus_5452#0      GAAGAAAAAAAGGGAAAGAGTTCTGTCTGTCTGCAGCGAGACGAGCGTAGGAAGAGCAAA 600
consensus_5452#1      ------------------------------------------------------------
                                                                                  

consensus_5452#0      ACCCATCAACTAGCGAAGAAGCAGCAGAACAAGAAAGGGCAACGTTCCCCCAGCTCCACG 660
consensus_5452#1      ------------------------------------------------------------
                                                                                  

consensus_5452#0      CCAGCGAGACAACGGAAATCATTCGATTTTCTCTCGATGAAAATCCAATCGATAAACGAA 720
consensus_5452#1      ------------------------------------------------------------
                                                                                  

consensus_5452#0      CGGAAAAAGGCTGCCAGCGCCTAAGGAGAGTA 752
consensus_5452#1      --------------------------------