These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5453#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1196 fasta sequence [ATCGGGGGCTAACGACACACTTCAAGGGCGATCAGTTCCCGGCCGGCATAATTGAAGGTCCACCAGGACCGCCAGGACCTCCTGGTCCACCGGGAGAAAAGGGTGACCCAGGACCAGAAGGACCGCCAGGACCGCAAGGCGAGAAAGTACCGCGAGGCAAGCGTGGCAAACGGGGACCGCCGGGACTGGACGGGATGAAGGGCGCACAGGGCGAAACCGGCAACAAGGGCGAACGGGGCGATCCAGGACTGCCCGGAACGGATGGCATCCCGGGCCAGGAGGGACCACGAGGTGAGAAGGGCGGCAAGGGTGATCCGGGCCCGATCGGCAAGCGGGGACGGAAGGGCGATCGTGGTGACAAGGGTGACCAGGGCGTGCCCGGACTGGACGCACCGTGCCCGCTGGGGATGGATGGACTACCCCTGCCCGGATGTGGTTGGCGTGCGCCGAAAGTGTATCAGGAACCGATCGTGCCGTCACCACCCCACAAGGACTATCTGCCCGATGTGACCGGAACCGAGAACGAAAGTGAATACGTCGAGGAGGAGGACGACGGGGCGCCCGAAACCGAGGACTACGAAGAGGAGTACGTGGAGAACGAAAATGGAAACTGATTCCAACCCCCGTTGACGGTTTAGGGCGGTACAGGGCAGACGTTTGGTCGTAGACTTGGGTGGAAACGGGAAATGTTAAATTTTACCAACAAACAATTAACATTCCACTGGCTGGTGTCCTTTTTTTGTTGCGCGATTGCGGTCATCTTGCTGTGTGTAGTTTTTACATGACCATCCCTTCTTTTCCATATTACCGCATTTGTGAATGGGAACGAGTTTGCCCTTTTGGTTTTTGTCCGCTCACGTTGTTGCTGATGTGTTTCCACTTTAATGCTATTATTTGCGTTGCGTTGATTAATTTATTTCGATTGCTGGCGTGAGCCCATTTTTTCATCTTGCTTTTACCATTTCCGATGGGCCAATGTATGTAAATGAAACTGCCAAAACGGAAAAGGGGAAATGGAAGCCTCCCGTACCTTCGTCAACGCGCGTGCCGCCATTCGTGGAAATGCGCACGGGCGAAATGATAGATGTAAATTAATTTAAGCTACACAATCCGTATCAGATTTTTATTTTCGCAGCATAATTTATGGGAACACACACGGGAACACACCACACACACATTCAGTTTTACATTTATGA] [+] EMBL BX615217 [ATCGGGGGCTAACGACACACTTCAAGGGCGATCAGTTCCCGGCCGGCATAATTGAAGGTCCACCAGGACCGCCAGGACCTCCTGGTCCACCGGGAGAAAAGGGTGACCCAGGACCAGAAGGACCGCCAGGACCGCAAGGCGAGAAAGTACCGCGAGGCAAGCGTGGCAAACGGGGACCGCCGGGACTGGACGGGATGAAGGGCGCACAGGGCGAAACCGGCAACAAGGGCGAACGGGGCGATCCAGGACTGCCCGGAACGGATGGCATCCCGGGCCAGGAGGGACCACGAGGTGAGAAGGGCGGCAAGGGTGATCCGGGCCCGATCGGCAAGCGGGGACGGAAGGGCGATCGTGGTGACAAGGGTGACCAGGGCGTGCCCGGACTGGACGCACCGTGCCCGCTGGGGATGGATGGACTACCCCTGCCCGGATGTGGTTGGCGTGCGCCGAAAGTGTATCAGGAACCGATCGTGCCGTCACCAC ] [+] EMBL BM626329 [ ccgATTGAAGGTCCACCAGGACCGCCAGGACCTCCTGGTCCACCGGGAGAAAAGGGTGACCCAGGACCAGAAGGACCGCCAGGACCGCAAGGCGAGAAAGGACCGCGAGGCAAGCGTGGCAAACGGGGACCGCCGGGACTGGACGGGATGAAGGGCGCACAGGGCGAAACCGGCAACAAGGGCGAACGGGGCGATCCAGGACTGCCCGGAACGGATGGCATCCCGGGCCAGGAGGGACCACGAGGTGAGAAGGGCGGCAAGGGTGATCCGGGCCCGATCGGCAAGCGGGGACGGAAGGGCGATCGTGGTGACAAGGGTGACCAGGGCGTGCCCGGACTGGACGCACCGTGCCCGCTGGGGATGGATGGACTACCCCTGCCCGGATGTGGTTGGCGTGCGCCGAAAGTGTATCAGGAACCGATCGTGCCGTCACCACCCCACAAGGACTATCTGCCCGATGTGACCGGAACCGAGAACGAAAGTGAATACGTCGAGGAGGAGGACGACGGGGCGCCCGAAACCGAGGACTACGAAGAGGAGTACGTGGAGAACGAAAATGGAAACTGATTCCAACCCCCGTTGACGGTTTAGGGCGGTACAGGGCAGACGTTTGGTCGTAGACTTGGGTGGAAACGGGAAATGTTAAATTTTACCAACAAACAATTAACATTCCACTGGCTGGTGTCCT ] [+] EMBL BX610251 [ TGCCCGGATGTGGTTGGCGTGCGCCGAAAGTGTATCAGGAACCGATCGTGCCGTCACCACCCCACAAGGACTATCTGCCCGATGTGACCGGAACCGAGAACGAAAGTGAATACGTCGAGGAGGAGGACGACGGGGCGCCCGAAACCGAGGACTACGAAGAGGAGTACGTGGAGAACGAAAATGGAAACTGATTCCAACCCCCGTTGACGGTTTAGGGCGGTACAGGG AGACGTTTGGTCGTAGACTTGGGTGG AACGGGAAATGTTAAATTTTACCAACAAACAATTAACATTCCACTGGCTGGTGTCCTTTTTTTGTTGCGCGATTGCGGTCATCTTGCTGTGTGTAGTTTTTACATGACCATCCCTTCTTTTCCATATTACCGCATTTGTGAATGGGAACGAGTTTGCCCTTTTGGTTTTTGTCCGCTCACGTTGTTGCTGATGTGTTTCCACTTTAATGCTATTATTTGCGTTGCGTTGATTAATTTATTTCGATTGCTGGCGTGAGCCCATTTTTTCATCTTGCTTTTACCATTTCCGATGGGCCAATGTATGTAAATGAAACTGCCAAAACGGAAAAGGGGAAATGGAAGCCTCCCGTACCTTCGTCAACGCGCGTGCCGCCATTCGTGGAAATGCGCACGGGCGAAATGATAGATGTAAATTAATTTAAGCTACACAATCCGTATCAGATTTTTATTTTCGCAGCATAATTTATGGGAACACACACGGGAACACACCACACACACATTCAGTTTTACATTTATGA] consensusID : consensus_5453#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 638 fasta sequence [CCGGTAGGTCCACCGGGACCGCCCGGACCACCTGGACGCGATGGAACACCCGGCACCAAGGGTGAAGCAGGTGAAGTGGGAGCTCCGGGATCGCTTGGACCGCGCGGTCTGGACGGAATGCCGGGAGAGCCGGGTATTGAGGGTCCTCCCGGATTGCCGGGCTATCAGGGCCCGCCGGGCGAGAAGGGCGATCCAGGCGATATCGGACCTCCAGGACTTATGGGGCCGCCTGGTTTGCCGGGTCCACCGGGCTACCCAGGAGTAAAAGGCGACAAAGGAGATCGAGGAGATTCCTTCCGGAAAATGCGACGGCGACAAGATCACGAAGGCATGGCCGACGAACCGTATCGGGATGTTGTGTATGGACCGCCGGGACCACCGGGACCACCGGGTCCGCTCGGACATCCGGGACCACCGGGACCGCGAGGCTACGATGGCAAGAAGGGCGACCGAGGCGAAAAAGGACAGAAGGGCGAATATGGACCAATGGGATTACCGGGTCCAATGGGAATGCGTGGAGATTCCGGTCCAGTGGGCCCTGTGGGCAAACCAGGACATCCGGGACCGCCGGGACTGGACGGGATGAAGGGCGCACAGGGCGAAACCGGCAACAAGGGCGAACGGGGCGATCCAGGACT] [+] EMBL BM575361 [CCGGTAGGTCCACCGGGACCGCCCGGACCACCTGGACGCGATGGAACACCCGGCACCAAGGGTGAAGCAGGTGAAGTGGGAGCTCCGGGATCGCTTGGACCGCGCGGTCTGGACGGAATGCCGGGAGAGCCGGGTATTGAGGGTCCTCCCGGATTGCCGGGCTATCAGGGCCCGCCGGGCGAGAAGGGCGATCCAGGCGATATCGGACCTCCAGGACTTATGGGGCCGCCTGGTTTGCCGGGTCCACCGGGCTACCCAGGAGTAAAAGGCGACAAAGGAGATCGAGGAGATTCCTTCCGGAAAATGCGACGGCGACAAGATCACGAAGGCATGGCCGACGAACCGTATCGGGATGTTGTGTATGGACCGCCGGGACCACCGGGACCACCGGGTCCGCTCGGACATCCGGGACCACCGGGACCGCGAGGCTACGATGGCAAGAAGGGCGACCGAGGCGAAAAAGGACAGAAGGGCGAATATGGACCAATGGGATTACCGGGTCCAATGGGAATGCGTGGAGATTCCGGTCCAGTGGGCCCTGTGGGCAAACCAGGACATCCGGGACCGCCGGGACTGGACGGGATGAAGGGCGCACAGGGCGAAACCGGCAACAAGGGCGAACGGGGCGATCCAGGACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5453#0 ATCGGGGGCTAACGACACACTTCAAGGGCGATCAGTTCCCGGCCGGCATAATTGAAGGTC 60 consensus_5453#1 ---------------------------CCGGTAGGTCC---ACCGGGACCGCC--CGGAC 28 ** * ** * **** * ** * consensus_5453#0 CACCAGGACCGCCAGGACCTCCTGGTCCACCGGGAGAAAAGGGTGACCCAGGACCAGAAG 120 consensus_5453#1 CACCTGGACGCGATGGAACACCCGGCACCAAGGGTGAAGCAGGTGAAGTGGGAGCTCCGG 88 **** **** *** * ** ** * *** *** ***** *** * * consensus_5453#0 GACCGCCAGGACCGCAAGGCGAGAAAGTACCGCGAGGCAAGCGTGGCAAACGGGGACCGC 180 consensus_5453#1 GATCGCTTGGACCGCGCGGTCTGGACGGAATGCCGGGAGAGCCGGGTATTGAGGGTCCTC 148 ** *** ******* ** * * * * ** ** *** ** * *** ** * consensus_5453#0 CGGGACTGGACGGGATGAAGGGCGCACAGGGCGAAACCGGCAACAAGGGCGAACGGGGCG 240 consensus_5453#1 CCGGATTGCCGGGCTATCAGGGCCCGCCGGGCGAGAAGGGCGATCCAGGCGATATCGGAC 208 * *** ** ** ***** * * ****** * *** * ***** ** consensus_5453#0 ATCCAGGACTGCCCGGAACGGATGGCATCCCGGGCCAGGAGGGACCACGAGGTGAGAAGG 300 consensus_5453#1 CTCCAGGACTTATGGGGCCGCCTGGTTTGCCGGGTCCACCGGGCTACCCAGGAGTAAAAG 268 ********* ** ** *** * ***** * *** * *** * ** * consensus_5453#0 GCGGCAAGGGTGATCCGGGCCCGATCGGCAAGCGGGGACGGAAGGGCGATCGTGGTGACA 360 consensus_5453#1 GCGACAAAGGAGATCGAGG--AGATTC-CTTCCGGA-----AAATGCGAC---GGCGACA 317 *** *** ** **** ** *** * *** ** **** ** **** consensus_5453#0 AGGGTGACCAGGGCGTGCCCGGACTGGACGCACCGTGCCCGCTGGGGATGGATGGACTAC 420 consensus_5453#1 AGA-TCACGAAGGCATGGCCG------ACGAACCGTATCGGGATGTTGTGTATGGACCGC 370 ** * ** * *** ** *** *** ***** * * * ** ****** * consensus_5453#0 CCCTGCCCGGATGTGGTTGGCGTGCGCCGAAAGTGTATCAGGAACCGATCGTGCCGTCAC 480 consensus_5453#1 CGGGACC--ACCGGGACCACCGGGT-CCGCTCGGACATCCGGGACCACCGGGACCG---C 424 * ** * * ** * *** * *** ** *** * *** * consensus_5453#0 CACCCCACAAGGACTATCTGCCCGATGTGACCGGAACCGAGAACGAAAGTGAATACGTCG 540 consensus_5453#1 GAGGCTACGATGGCAAGAAGGGCGACCGAGGCGAAA--AAGGACAGAAGGGCGAATATGG 482 * * ** * * * * * *** ** ** ** ** *** * * * * consensus_5453#0 AGGAGGAGGACGACGGGGCGC--CCGAAAC---CGAGGACTACGAAGAGGAGTACGTGGA 595 consensus_5453#1 ACCAATGGGATTACCGGGTCCAATGGGAATGCGTGGAGATTCCGGTCCAGTGGGCCCTGT 542 * * *** ** *** * * ** * ** * ** * * * * consensus_5453#0 GAACGAAAATGGAAA-CTGATTCCAACCCCCGTTGACGGTTTAGGGCG-GTACAGGGCAG 653 consensus_5453#1 GGGCAAACCAGGACATCCGGGACCGCCGGGACTGGACGGGATGAAGGGCGCACAGGGCGA 602 * * ** *** * * * ** * * ***** * * * * ******* consensus_5453#0 ACGTTTGGTCGTAGACTTGGGTGGAAACGGGAAATGTTAAATTTTACCAACAAACAATTA 713 consensus_5453#1 A------ACCGGCAACAAGGGCG-AACGGGGCGATCCAGGACT----------------- 638 * ** ** *** * ** *** ** * * consensus_5453#0 ACATTCCACTGGCTGGTGTCCTTTTTTTGTTGCGCGATTGCGGTCATCTTGCTGTGTGTA 773 consensus_5453#1 ------------------------------------------------------------ consensus_5453#0 GTTTTTACATGACCATCCCTTCTTTTCCATATTACCGCATTTGTGAATGGGAACGAGTTT 833 consensus_5453#1 ------------------------------------------------------------ consensus_5453#0 GCCCTTTTGGTTTTTGTCCGCTCACGTTGTTGCTGATGTGTTTCCACTTTAATGCTATTA 893 consensus_5453#1 ------------------------------------------------------------ consensus_5453#0 TTTGCGTTGCGTTGATTAATTTATTTCGATTGCTGGCGTGAGCCCATTTTTTCATCTTGC 953 consensus_5453#1 ------------------------------------------------------------ consensus_5453#0 TTTTACCATTTCCGATGGGCCAATGTATGTAAATGAAACTGCCAAAACGGAAAAGGGGAA 1013 consensus_5453#1 ------------------------------------------------------------ consensus_5453#0 ATGGAAGCCTCCCGTACCTTCGTCAACGCGCGTGCCGCCATTCGTGGAAATGCGCACGGG 1073 consensus_5453#1 ------------------------------------------------------------ consensus_5453#0 CGAAATGATAGATGTAAATTAATTTAAGCTACACAATCCGTATCAGATTTTTATTTTCGC 1133 consensus_5453#1 ------------------------------------------------------------ consensus_5453#0 AGCATAATTTATGGGAACACACACGGGAACACACCACACACACATTCAGTTTTACATTTA 1193 consensus_5453#1 ------------------------------------------------------------ consensus_5453#0 TGA 1196 consensus_5453#1 --- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||