These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5456#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1301 fasta sequence [GGCGACGACGCAGCCGTCCGAGTACAGCACCAGCATCAGCGGCCACCCGGTCACGGACGACGGGGTCGTGCTGCGGAAGCCCCCGAAGACTGGCTCGACCGCGATCAAGCGCCGGTCGGGCAACAGGCGTTCGCGCACCAAGCTGAAGCGCCGCTGCTCCATCAACGGCCACTTTTACAACCGGGAAACGTCCTTCTTCACGCCCCCGTACGGCTCGCAGATGAACGTTTGGGTGACGTCGCTCGTCAACACGCAGGAGGTGATCAACCTGCTGCTGGAAAATTATAAGGTCGAATCGAGGGCGGAAAACTTTGCGCTCTTCATCGTGCGCGACAACGGCGAGCAGAAGAAGCTGAAGGACGACGACTATCCGCTCGTGACGCGCGTCATTCTTGGCCCCCACGAGGATATTGCGAAACTGTTCCTAATGGACGGTCAGCAAACGCAGGAAATAAGCAGCGAGGTTGCACAGTTTCTGAACCTTTCCATTCCGGTGCCGCGCTATCTTGGAACGGTTCCACGAGGAGGAGCAACGGGAGCTGCACCGGATTCGGATCAAATTTGCCGAACTGCGAAAGCGCATCGTGCAGCGCATGGAATCGCTTAAAGTTTGGCTGTAGACTCCCCCACACACACCATGGTGACTTTCTGTGTGAAACAATTCCCTCTACTCCCTCCCTACTTCTTCTTCTTCTTCGTCGGCTCACCAAGCAGGGGAGAAGTATTCCCGCAAAACAATGAAAAAAAGCAATCAAAGTGAATAGAAATCATATTTGTTGATGTTTGTTGTTAAGCGAAAGTAGGCACGGGCGCTCGCGAAGAGAAGGACGATAGTTTTTTTTATAAGAAAAAAAAACAAAAAAAAAACGGGACTGGCACAGCACAGAGGGAAGCGAGTTAGCGGTGAAGCGCGTGTTTGTGTGCATCATTTAATCTCATAGCCGCTCCGTTCAGCAAGCTAATCAACGTCAGTGTATAGTTTTAGTACGTTTCACTCGTTTGGCAACCTTTTCTTCTTTTTTTTTTTTAATCGGTGCGAACGCGTCCCCTGGGTCGTGATTGTTTATCGTTTATGATTAACGGAAAAAAATCTTGTCGATCGATTTACTCGAATTGTATTGTAGTATTTTTTTTGTTTGTTTGTTGTAATAAGCTAGTAAATGCAACCACTACTGGTACTCGAAAGTGTGTGTGTGTGTGTGTATGTGTGTGTAAGGGCAAGAGATCGATAGCATAATGCCAAACTGCCAAACGTGAGAGGTCCATCCACGCCTGCAGCATTGAAACAAACGGATAGAAAG] [+] EMBL BX615156 [GGCGACGACGCAGCCGTCCGAGTACAGCACCAGCATCAGCGGCCACCCGGTCACGGACGACGGGGTCGTGCTGCGGAAGCCCCCGAAGACTGGCTCGACCGCGATCAAGCGCCGGTCGGGCAACAGGCGTTCGCGCACCAAGCTGAAGCGCCGCTGCTCCATCAACGGCCACTTTTACAACCGGGAAACGTCCTTCTTCACGCCCCCGTACGGCTCGCAGATGAACGTTTGGGTGACGTCGCTCGTCAACACGCAGGAGGTGATCAACCTGCTGCTGGAAAATTATAAGGTCGAATCGAGGGCGGAAAACTTTGCGCTCTTCATCGTGCGCGACAACGGCGAGCAGAAGAAGCTGAAGGACGACGACTATCCGCTCGTGACGCGCGTCATTCTTGGCCCCCACGAGGATATTGCGAAACTGTTCCTAATGGACGGTCAGCAAACGCAGGAAATAAGCAGCGAGGTTGCACAGTTTCTGAACCTTTCCATTCCGGTGCCGCGCTATCTTGGAACGGTTCCACGAGGAGGAGCAACGGGAGCTGCACCGGATTCGGATCAAATTTGCCGAACTGCGAAAGCGCATCGTGCAGCGCATGGAATCGCTTAAAGTTTGGCTGTAGACTCCCCCACACACACCATGGTGACTTTCTGTGTGAAACAATTCCCTCTACTCCCTCCCTACTTCTTCTTCTTCTTCGTCGGCTCACCAAGCA ] [+] EMBL BM575441 [ ccgCCCACACACACCATAGTGACTTTCTGTCTGAAACAATTCCCTCTACTCCCTCCCTACTTCTTCTTCTTCTTCGTCGGCTCACCAAGCAGGGGAGAAGTATTCCCGCAAAACAATGAAAAAAAGCAATCAAAGTGAATAGAAATCATATTTGTTGATGTTTGTTGTTAAGCGAAAGTAGGCACGGGCGCTCGCGAAGAGAAGGACGATAGTTTTTTTTATAAGAAAAAAAAACAAAAAAAAAACGGGACTGGCACAGCACAGAGGGAAGCGAGTTAGCGGTGAAGCGCGTGTTTGTGTGCATCATTTAATCTCATAGCCGCTCCGTTCAGCAAGCTAATCAACGTCAGTGTATAGTTTTAGTACGTTTCACTCGTTTGGCAACCTTTTCTTCTTTTTTTTTTTTAATCGGTGCGAACGCGTCCCCTGGGTCGTGATTGTTTATCGTTTATGATTAACGGAAAAAAATCTTGTCGATCGATTTACTCGAATTGTATTGTAGTATTTTTTTTGTTTGTTTGTTGTAATAAGCTAGTAAATGCAACCACTACTGGTACTCGAAAGTGTGTGTGTGTGTGTGTATGTGTGTGTAAGGGCAAGAGATCGATAGCATAATGCCAAACTGCCAAACGTGAGAGGTCCATCCACGCCTGCAGCATTGAAACAAACGGATAGAAAG] consensusID : consensus_5456#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 859 fasta sequence [GGGGCGACACCCTTACTCGAATTGTATTGTAGTATTTTTTTTGTTTGTTTGTTGTAATAAGCTAGCAAATGCAACCACTACTGGTACTCGAAAGTGTGTGTGTGTATGTGTGTGTAAGGGCAAGAGATCGATAGCATAATGCCAAACTGCCAAACGTGAGAGGTCCATCCACGCCTGCAGCATTGACTGTCGGCCTGAAACAAACGGATAGAAAGCGATCGAGGCGAAGAAAATAGAAACAGAGCGAACGAAGAGTAAGAGCAGCAGGAAACACACTCAAACACTATTGTGTATAGGGCAAGCAATACGTAACACAGCAAAAAAAAAGAAGCAAAACACCACGCACGAAACCTCAACATATTTATCTCCCCACAAGACTCATTCAGGGACTCATAAAAAAAAAAAGAGCTAACCAAACAAAGTGCTACCGATATGAACAAAGAAAAACACACATACAAACATAGAACGATGGCAAGTGAAATTTCGATTCGATGCCAACCGATTTAGAGTAGTAGCGTACGGCGGAAAGGCTATTTAGTGTATTGCCTTTCGGGATCGCGTATCAACCGTAAACCACCCCCAGACTGACAGTCCAGGTGCTTCCGCCTAGAGCCTCATAAAACATGTTCGTGGTTGAAATCAATGGCGGCCATGTGCGCCTGTTCGCCGATCAATGCTGGGTGCAGGAAAGCATTGACAGGATAGGCACGGCTTAAGAGGAGCGTTTCGAGCCAACTAGCAAGCGTTATCGTTTGACCTTTCCTTTCTCAAATACAGCGGTTCTGTTTGCAGTGCTATTTGGTTAGCTGGCGCGTTTATTTTTAGTTGAATTTATTTCCATACCTAACAATGGCATATT] [+] EMBL CNS096OR [GGGGCGACACCCTTACTCGAATTGTATTGTAGTATTTTTTTTGTTTGTTTGTTGTAATAAGCTAGCAAATGCAACCACTACTGGTACTCGAAAGTGTGTGTGTGTATGTGTGTGTAAGGGCAAGAGATCGATAGCATAATGCCAAACTGCCAAACGTGAGAGGTCCATCCACGCCTGCAGCATTGACTGTCGGCCTGAAACAAACGGATAGAAAGCGATCGAGGCGAAGAAAATAGAAACAGAGCGAACGAAGAGTAAGAGCAGCAGGAAACACACTCAAACACTATTGTGTATAGGGCAAGCAATACGTAACACAGCAAAAAAAAAGAAGCAAAACACCACGCACGAAACCTCAACATATTTATCTCCCCACAAGACTCATTCAGGGACTCATAAAAAAAAAAAGAGCTAACCAAACAAAGTGCTACCGATATGAACAAAGAAAAACACACATACAAACATAGAACGATGGCAAGTGAAATTTCGATTCGATGCCAACCGATTTAGAGTAGTAGCGTACGGCGGAAAGGCTATTTAGTGTATTGCCTTTCGGGATCGCGTATCAACCGTAAACCACCCCCAGACTGACAGTCCAGGTGCTTCCGCCTAGAGCCTCATAAAACATGTTCGTGGTTGAAATCAATGGCGGCCATGTGCGCCTGTTCGCCGATCAATGCTGGGTGCAGGAAAGCATTGACAGGATAGGCACGGCTTAAGAGGAGCGTTTCGAGCCAACTAGCAAGCGTTATCGTTTGACCTTTCCTTTCTCAAATACAGCGGTTCTGTTTGCAGTGCTATTTGGTTAGCTGGCGCGTTTATTTTTAGTTGAATTTATTTCCATACCTAACAATGGCATATT] consensusID : consensus_5456#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 665 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGTTTATCGTTTATGATTAACGGAAAAAAATCTTGTCGATCGATTTACTCGAATTGTATTGTAGTATTTTTTTGTTTGTTTGTTGTAATAAGCTAGTAAATGCAACCACTACTGGTACTCGAAAGTGTGTGTGTGTGTATGTGTGTGTAAGGGCAAGAGATCGATAGCATAATGCCAAACTGCCAAACGTGAGAGGTCCATCCACGCCTGCAGCATTGACTGTTGGCCTGAAACAAACGGATAGAAAGCGATCGAGGCGGAGGAAATAGAAACAGAGCGAACGAAGAGTAAGAGCAGCAGGAAACACACTCAAACACTATTGTGTATAGGGCAAGCAATACGTAACACAGCAAAAAAAAAGAAGCAAAACACCACGCACGAAACCTCAACATATTTATCTCCCCACAAGACTCATTCAGGGACTCATCCGAAGCGTTAGAGCTAACCAAACAAAGTGCTACCGATATGAACAAAGAAAAACACACATACAAACATAGAACGATGGCAAGTGAAATTTCGATTTGATGCCAACCGATTTAGAGTAGTAGCGTACGGCGGAAAGGCTATGTAGTGTATTGCCTTTCGGGATCGCGTATCAACCGTAAACCACCCCCAGACTGACAGTCCAGGTGCTTCCGC] [+] EMBL BM617134 [CCGCCCACGCGTCCGCCCACGCGTCCGGTTTATCGTTTATGATTAACGGAAAAAAATCTTGTCGATCGATTTACTCGAATTGTATTGTAGTATTTTTTTGTTTGTTTGTTGTAATAAGCTAGTAAATGCAACCACTACTGGTACTCGAAAGTGTGTGTGTGTGTATGTGTGTGTAAGGGCAAGAGATCGATAGCATAATGCCAAACTGCCAAACGTGAGAGGTCCATCCACGCCTGCAGCATTGACTGTTGGCCTGAAACAAACGGATAGAAAGCGATCGAGGCGGAGGAAATAGAAACAGAGCGAACGAAGAGTAAGAGCAGCAGGAAACACACTCAAACACTATTGTGTATAGGGCAAGCAATACGTAACACAGCAAAAAAAAAGAAGCAAAACACCACGCACGAAACCTCAACATATTTATCTCCCCACAAGACTCATTCAGGGACTCATCCGAAGCGTTAGAGCTAACCAAACAAAGTGCTACCGATATGAACAAAGAAAAACACACATACAAACATAGAACGATGGCAAGTGAAATTTCGATTTGATGCCAACCGATTTAGAGTAGTAGCGTACGGCGGAAAGGCTATGTAGTGTATTGCCTTTCGGGATCGCGTATCAACCGTAAACCACCCCCAGACTGACAGTCCAGGTGCTTCCGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5456#1 ------------------------------------------------------------ consensus_5456#2 ------------------------------------CCGCCCACGCGTCCGCCCACGCGT 24 consensus_5456#0 GGCGACGACGCAGCCGTCCGAGTACAGCACCAGCATCAGCGGCCACCCGGTCACGGACGA 60 consensus_5456#1 ----------------------------------GGGGCGACACCCTTACTCGAATTGTA 26 consensus_5456#2 CCGGTTTATCGTTTATGATTAACGGAAAAAAATCTTGTCGATCGATTTACTCGAATTGTA 84 consensus_5456#0 CGGGGTCGTGCTGCGGAAGCCCCCGAAGACTGGCTCGACCGCGATCAAGCGCCGGTCGGG 120 * * * * * * consensus_5456#1 TTGTAGTATTTTTTTTGTTTGTTTGTTGTAATAAGCTAGCAAATGCAACCACTACTGGTA 86 consensus_5456#2 TTGTAGTATTTTTTT-GTTTGTTTGTTGTAATAAGCTAGTAAATGCAACCACTACTGGTA 143 consensus_5456#0 CAACAGGCGTTCGCGCACCAAGCTGAAGCGCCGCTGCTCCATCAACGGCCACTTTTACAA 180 ** ** ** * * * ***** * * consensus_5456#1 CTCGAAAGTGTGTGTGTG--TATGTGTGTGTAAGG---GCAAGAGATCGATAGCATAATG 141 consensus_5456#2 CTCGAAAGTGTGTGTGTGTGTATGTGTGTGTAAGG---GCAAGAGATCGATAGCATAATG 200 consensus_5456#0 CCGGGAAACGTCCTTCTT--CACGCCCCCGTACGGCTCGCAGATGAACGTTTGGGTGACG 238 * * ** ** * * * * *** ** *** ** ** * * * * * consensus_5456#1 CCAAACTGCCAAACGTGAGAGGT---CCATCCACGCCTGCAGCATTG---------ACTG 189 consensus_5456#2 CCAAACTGCCAAACGTGAGAGGT---CCATCCACGCCTGCAGCATTG---------ACTG 248 consensus_5456#0 TCGCTCGTCAACACGCAGGAGGTGATCAACCTGCTGCTGGAAAATTATAAGGTCGAATCG 298 * * * * *** ***** * * * * *** * *** * * consensus_5456#1 TCGGCCTGAAACAAACGGATAGAAAGCGATCGAGGCGAAGAAAATAGAAACAGAGCGAAC 249 consensus_5456#2 TTGGCCTGAAACAAACGGATAGAAAGCGATCGAGGCGGAGGAAATAGAAACAGAGCGAAC 308 consensus_5456#0 AGGGCGGAAAACTTTGCGCTCTTCATCGTGCGCGACAACGGCGAGCAGAAGAAGCTGAAG 358 *** **** * * * ** ** * * * * ** * *** consensus_5456#1 GAAGAGTAAGAGCAGCAGGAAACACAC-TCA-----AACACTATTGTGTATAGGGC-AAG 302 consensus_5456#2 GAAGAGTAAGAGCAGCAGGAAACACAC-TCA-----AACACTATTGTGTATAGGGC-AAG 361 consensus_5456#0 GACGACGACTATCCGCTCGTGACGCGCGTCATTCTTGGCCCCCACGAGGATATTGCGAAA 418 ** ** * * * ** * ** * * *** * * * * *** ** ** consensus_5456#1 CAATACGTAAC--ACAGCAAAAAAA---AAGAAGCAAAACACCA---CGCACGAAACCTC 354 consensus_5456#2 CAATACGTAAC--ACAGCAAAAAAA---AAGAAGCAAAACACCA---CGCACGAAACCTC 413 consensus_5456#0 CTGTTCCTAATGGACGGTCAGCAAACGCAGGAAATAAGCAGCGAGGTTGCACAGTTTCTG 478 * * * *** ** * * *** * *** ** * * **** ** consensus_5456#1 AACATATTTATCTCCCCACAAGACTCATTCAG---GGACTCATAAAAAAAAAAAGAGCTA 411 consensus_5456#2 AACATATTTATCTCCCCACAAGACTCATTCAG---GGACTCATCCGAAGCGTTAGAGCTA 470 consensus_5456#0 AACCTTTCCATTCCGGTGCCGCGCTATCTTGGAACGGTTCCACGAGGAGGAGCAACGGGA 538 *** * * ** * * ** * * ** ** * * * * consensus_5456#1 ACCAAACAAAGTGCTA--CCGATATGAACAAAGAAAAACACACATACAAACATAGAACGA 469 consensus_5456#2 ACCAAACAAAGTGCTA--CCGATATGAACAAAGAAAAACACACATACAAACATAGAACGA 528 consensus_5456#0 GCTGCACCGGATTCGGATCAAATTTGCCGAACTGCGAAAGCGCAT-CGTGCAGCGCATGG 597 * ** * * * ** ** ** ** * *** * ** * * * consensus_5456#1 TGGCAAGTGAAATTTCGAT-TCGATGCCAACCGATTTAGAGTAGTAGCGTACGGCGGAAA 528 consensus_5456#2 TGGCAAGTGAAATTTCGAT-TTGATGCCAACCGATTTAGAGTAGTAGCGTACGGCGGAAA 587 consensus_5456#0 AATCGCTTAAAGTTTGGCTGTAGACTCCCCCACACACACCATGGTGACTTTCTGTGTGAA 657 * * ** *** * * * ** ** * * * * ** * * * * * ** consensus_5456#1 GG-------------------CTATTTAGTGTATTGCCTTTCGGGATCGCGTATCAACCG 569 consensus_5456#2 GG-------------------CTATGTAGTGTATTGCCTTTCGGGATCGCGTATCAACCG 628 consensus_5456#0 ACAATTCCCTCTACTCCCTCCCTACTTCTTCTTCTTCTTCGTCGGCTCACCAAGCAGGGG 717 *** * * * * * * ** ** * * ** * consensus_5456#1 TAAACCACCCCC--AGACTGACAGTCCAGGTGCTTCCGCCTAGAGCCTCATAAAACATGT 627 consensus_5456#2 TAAACCACCCCC--AGACTGACAGTCCAGGTGCTTCCGC--------------------- 665 consensus_5456#0 AGAAGTATTCCCGCAAAACAATGAAAAAAAGCAATCAAAGTGAATAGAAATCATATTTGT 777 ** * *** * * * * ** consensus_5456#1 TCGTGGTTGAAATCAATGGCGGCCATGTGCGCCTGTTCGCCGATCAATGCTGGGTGCAGG 687 consensus_5456#2 ------------------------------------------------------------ consensus_5456#0 TGATGTTTGTTGTTAAGCGAAAGTAGGCACGGGCGCTCGCGAAGAGAAGGACGATAGTTT 837 consensus_5456#1 AAAGCATTGACAGGATAGGCACGGCTTAAGAGGAGCGTTTCGAGCCAACTAGCAAGCG-- 745 consensus_5456#2 ------------------------------------------------------------ consensus_5456#0 TTTTTATAAGAAAAAAAAACAAAAAAAAAACGGGACTGGCACAGCACAGAGGGAAGCGAG 897 consensus_5456#1 TTATCGTTTGACCTTTCCTTTCTCAAATACAGCGGTTCTGTTTGCAGTGCTATTTGGTTA 805 consensus_5456#2 ------------------------------------------------------------ consensus_5456#0 TTAGCGGTGAAGCGCGTGTTTGTGTGCATCATTTAATCTCATAGCCGCTCCGTTCAGCAA 957 consensus_5456#1 GCTGGC--GCGTTTATTTTTAGTTGAATTTATTTCCATAC--CTAACAATGGCATATT-- 859 consensus_5456#2 ------------------------------------------------------------ consensus_5456#0 GCTAATCAACGTCAGTGTATAGTTTTAGTACGTTTCACTCGTTTGGCAACCTTTTCTTCT 1017 consensus_5456#1 ------------------------------------------------------------ consensus_5456#2 ------------------------------------------------------------ consensus_5456#0 TTTTTTTTTTTAATCGGTGCGAACGCGTCCCCTGGGTCGTGATTGTTTATCGTTTATGAT 1077 consensus_5456#1 ------------------------------------------------------------ consensus_5456#2 ------------------------------------------------------------ consensus_5456#0 TAACGGAAAAAAATCTTGTCGATCGATTTACTCGAATTGTATTGTAGTATTTTTTTTGTT 1137 consensus_5456#1 ------------------------------------------------------------ consensus_5456#2 ------------------------------------------------------------ consensus_5456#0 TGTTTGTTGTAATAAGCTAGTAAATGCAACCACTACTGGTACTCGAAAGTGTGTGTGTGT 1197 consensus_5456#1 ------------------------------------------------------------ consensus_5456#2 ------------------------------------------------------------ consensus_5456#0 GTGTGTATGTGTGTGTAAGGGCAAGAGATCGATAGCATAATGCCAAACTGCCAAACGTGA 1257 consensus_5456#1 -------------------------------------------- consensus_5456#2 -------------------------------------------- consensus_5456#0 GAGGTCCATCCACGCCTGCAGCATTGAAACAAACGGATAGAAAG 1301 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||