These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5459#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1285 fasta sequence [CCGCCAGTCGAGTAGTAAGCATCAGGACGGTACAGCTCTGAGCAAAAGCACAAACCACCGATCCGCGAAGGCAGCGTACATTCTTGGTTGAAGTTTTTTTTTCTCTTGCTACTGCGTGCCCTTGCACCGAAAAGTGCGTAGTGAAGACGGTCAGGGGTGTAGCCTGCGCGAACGGAGGTGCACTTTTTGCTAAATAAAAGCGTTAAGATTCTATAGTTTCGTGAGATTGGATTGGAAAAGGATAGTGAGAGACACTCGAAGTCGTGTTATAAATTTAGAAAAGGATATTGAAAAAGTACATTTTTGGCTGCCGCTCGCTGGACACACTACAGCCCTGGTCCGCGCGGCAAGGGAGAAAGTGACAGCACGGGCGGAGCAGAACAGCAGCGGCGCAAGCGAGAAGTAACTAGCCCGTGTATACTGTGCGAGCGTGCGAGCGGGGCAGCTGCATACATGCGCAACCGGGACGGCACGTTTCGGAATATGGCGACGGTGGAAAAGCTACATTCAGTGTTTTTTAGTGCAAAGTTGAATGTTTCTAGTGAACGATTTTAGTGAGCAAAGTT--------TGTGTGTGTGTGTGTGTGAGAGCGTTTTGAGCGTGCAAAATTAAAGAACATTTTAGTGTGTGATTGAGTGCAACATGTCGATTGAAAACAGTATGGAGACGGCGGAAAGCATGGCTTTCACGCGGCAGTGCGATGAAGTCGATGCGCTCCCCAGCCAGACCGCACAGTCGTCTGGAAGCTGCGAGCCGAATGTGGTCGGCTCGTCGTCGAGCGCAGCAACCGTCGGTGCGAATGGTTGCGCCAGCCGCCACTGCGAAACGATGGGGGCGCTAGTGTGGCTGCTGGCGAAGATGGAGGACGGCGACCGTTGGGACGATGATGGTCGCCGTAATGGGGGGGTTTGGTTTCGCGCCAGGATTCAAACGAACTGTCGGAAGCTAACCGTGATGGCAAGGGGCACCCCGGTGTGGGTAGCAATCAGGGCAATGGTACGGGGGTGCCAATGGCGACAGCGGCCACCATGAGCAATCGGACTGGGGAGGGGCGCTGCCGGCGCAAAAACCGCCGTCGCAAGTCGAACCGCGGCAAATCGAGCTCGAACCGCCCGTACAGCAAGACCCAGTGGAAGTTTCAGTGTCCTCCCGGGGGGCAACCGGGTGGTGGTGGGTGGTGGAGGCCGCCCGGGTGGTGGTGCGGAGAGCAATTGCAACAAACGGCGCCATCTCTACTCGGTGGCGGCCTCGCGCCGCATCACACCGTTTCCTGAAGTCCGATCAGCC] [+] EMBL BM610098 [CCGCCAGTCGAGTAGTAAGCATCAGGACGGTACAGCTCTGAGCAAAAGCACAAACCACCGATCCGCGAAGGCAGCGTACATTCTTGGTTGAAGTTTTTTTTTCTCTTGCTACTGCGTGCCCTTGCACCGAAAAGTGCGTAGTGAAGACGGTCAGGGGTGTAGCCTGCGCGAACGGAGGTGCACTTTTTGCTAAATAAAAGCGTTAAGATTCTATAGTTTCGTGAGATTGGATTGGAAAAGGATAGTGAGAGACACTCGAAGTCGTGTTATAAATTTAGAAAAGGATATTGAAAAAGTACATTTTTGGCTGCCGCTCGCTGGACACACTACAGCCCTGGTCCGCGCGGCAAGGGAGAAAGTGACAGCACGGGCGGAGCAGAACAGCAGCGGCGCAAGCGAGAAGTAACTAGCCCGTGTATACTGTGCGAGCGTGCGAGCGGGGCAGCTGCATACATGCGCAACCGGGACGGCACGTTTCGGAATATGGCGACGGTGGAAAAGCTACATTCAGTGTTTTTTAGTGCAAAGTTGAATGTTTCTAGTGAACGATTTTAGTGAGCAAAGTT TGTGTGTGTGTGTGTGTGAGAGCGTTTTGAGCGTGCAAAATTAAAGAACATTTTAGTGTGTGATTGAGTGCAACATGTCGATTGAAAACAGTATGGAGACGGCGGAAAGCATGG ] [+] EMBL BM575549 [ ccGAAGCAACTAGCCCGTGTATACTGTGCGAGCGTGCGAGCGGGGCAGCTGCATACATGCGCAACCGGGACGGCACGTTTCGGAATATGGCGACGGTGGAAAAGCTACATTCAGTGTTTTTTAGTGCAAAGTTGAATGTTTCTAGTGAACGATTTTAGTGAGCAAAGTTTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGCGTTTTGAGCGTGCAAAATTAAAGAACATTTTAGTGTGTGATTGAGTGCAACATGTCGATTGAAAACAGTATGGAGACGGCGGAAAGCATGGCTTTCACGCGGCAGTGCGATGAAGTCGATGCGCTCCCCAGCCAGACCGCACAGTCGTCTGGAAGCTGCGAGCCGAATGTGGTCGGCTCGTCGTCGAGCGCAGCAACCGTCGGTGCGAATGGTTGCGCCAGCCGCCACTGCGAAACGATGGGGGCGCTAGTGTGGCTGCTGGCGAAGATGGAGGACGGCGACCGTTGGGACGATGATGGTCGCCGTAATGGGGGGGTTTGGTTTCGCGCCAGGATTCA ] [+] EMBL BM630528 [ ccGAAAGCATGGCTTTCACGCGGCAGTGCGATGAAGTCGATGCGCTCCCCAGCCAGACCGCACAGTCGTCTGGAAGCTGCGAGCCGAATGTGGTCGGCTCGTCGTCGAGCGCAGCAACCGTCGGTGCG ATGGTTGCGCCAGCCGCCACTGCG AACGATGGGGGCGCTAGTGTGGCTGCTGGCGAAGATGGAGGACGGCGACCGTT GGACGATGATGGTCGTCGTA GTGGCGGTTTGGTTTCGCGCCAGGATTCAAACGAACTGTCGGAAGCTAACCGTGATGGCAAGGGGCACCCCGGTGTGGGTAGCAATCAGGGCAATGGTACGGGGGTGCCAATGGCGACAGCGGCCACCATGAGCAATCGGACTGGGGAGGGGCGCTGCCGGCGCAAAAACCGCCGTCGCAAGTCGAACCGCGGCAAATCGAGCTCGAACCGCCCGTACAGCAAGACCCAGTGGAAGTTTCAGTGTCCTCCCGGGGGGCAACCGGGTGGTGGTGGGTGGTGGAGGCCGCCCGGGTGGTGGTGCGGAGAGCAATTGCAACAAACGGCGCCATCTCTACTCGGTGGCGGCCTCGCGCCGCATCACACCGTTTCCTGAAGTCCGATCAGCC] consensusID : consensus_5459#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 286 fasta sequence [CCGCGGACGCGTGGGCGGCCTCGCGCCGCATCACACCGTTCCTGAAGTCCGATCAGCCACCGCTAGTGCCATACAACACCAACCGCTTCCTGATGGAGGACCACATGCCGCAAGTGCTCACGCCGTCAGAGGATGAAGAGGACTTCCTGACGAAGGAGTTCTCCAGCGTGTACGAGCGGGAGCGTTTCGAGCGGCTGGAAAGCCTCAGCCACCCGGACCTCGTGCAAGAGTACATAAAGCTCGCGATCGAGTACGAGCAGCTGGTGCGCCGCAACGGCGTCACCGG] [+] EMBL BM585317 [CCGCGGACGCGTGGGCGGCCTCGCGCCGCATCACACCGTTCCTGAAGTCCGATCAGCCACCGCTAGTGCCATACAACACCAACCGCTTCCTGATGGAGGACCACATGCCGCAAGTGCTCACGCCGTCAGAGGATGAAGAGGACTTCCTGACGAAGGAGTTCTCCAGCGTGTACGAGCGGGAGCGTTTCGAGCGGCTGGAAAGCCTCAGCCACCCGGACCTCGTGCAAGAGTACATAAAGCTCGCGATCGAGTACGAGCAGCTGGTGCGCCGCAACGGCGTCACCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5459#0 CCGCCAGTCGAGTAGTAAGCATCAGGACGGTACAGCTCTGAGCAAAAGCACAAACCACCG 60 consensus_5459#1 ------------------------------------------------------------ consensus_5459#0 ATCCGCGAAGGCAGCGTACATTCTTGGTTGAAGTTTTTTTTTCTCTTGCTACTGCGTGCC 120 consensus_5459#1 ------------------------------------------------------------ consensus_5459#0 CTTGCACCGAAAAGTGCGTAGTGAAGACGGTCAGGGGTGTAGCCTGCGCGAACGGAGGTG 180 consensus_5459#1 ------------------------------------------------------------ consensus_5459#0 CACTTTTTGCTAAATAAAAGCGTTAAGATTCTATAGTTTCGTGAGATTGGATTGGAAAAG 240 consensus_5459#1 ------------------------------------------------------------ consensus_5459#0 GATAGTGAGAGACACTCGAAGTCGTGTTATAAATTTAGAAAAGGATATTGAAAAAGTACA 300 consensus_5459#1 ------------------------------------------------------------ consensus_5459#0 TTTTTGGCTGCCGCTCGCTGGACACACTACAGCCCTGGTCCGCGCGGCAAGGGAGAAAGT 360 consensus_5459#1 ------------------------------------------------------------ consensus_5459#0 GACAGCACGGGCGGAGCAGAACAGCAGCGGCGCAAGCGAGAAGTAACTAGCCCGTGTATA 420 consensus_5459#1 ------------------------------------------------------------ consensus_5459#0 CTGTGCGAGCGTGCGAGCGGGGCAGCTGCATACATGCGCAACCGGGACGGCACGTTTCGG 480 consensus_5459#1 ------------------------------------------------------------ consensus_5459#0 AATATGGCGACGGTGGAAAAGCTACATTCAGTGTTTTTTAGTGCAAAGTTGAATGTTTCT 540 consensus_5459#1 ------------------------------------------------------------ consensus_5459#0 AGTGAACGATTTTAGTGAGCAAAGTTTGTGTGTGTGTGTGTGTGAGAGCGTTTTGAGCGT 600 consensus_5459#1 ------------------------------------------------------------ consensus_5459#0 GCAAAATTAAAGAACATTTTAGTGTGTGATTGAGTGCAACATGTCGATTGAAAACAGTAT 660 consensus_5459#1 ------------------------------------------------------------ consensus_5459#0 GGAGACGGCGGAAAGCATGGCTTTCACGCGGCAGTGCGATGAAGTCGATGCGCTCCCCAG 720 consensus_5459#1 ------------------------------------------------------------ consensus_5459#0 CCAGACCGCACAGTCGTCTGGAAGCTGCGAGCCGAATGTGGTCGGCTCGTCGTCGAGCGC 780 consensus_5459#1 -----CCGCGGACGCGTG-GGCGGCCTCGCGCCGCATCACACCGTTCCTGAAGTCCGATC 54 **** * *** ** ** ** **** ** ** * * * consensus_5459#0 AGCAACCGTCGGTGCGAATGGTTGCGCCAGCCGCCACTGCGAAACGATGGGGGCGCTAGT 840 consensus_5459#1 AGCCACCGCTAGTGCCA-----TACAACACCAACCGCTTCCTGATGGAGGACCACATGCC 109 *** **** **** * * * ** * ** ** * * * ** * consensus_5459#0 GTGGCTGCTGGCGAAGATGGAGGACGGCGAC--CGTTGGGACGATGATGGTCGCCGTAAT 898 consensus_5459#1 GCAAGTGCTCACGCCGTCAGAGGATGAAGAGGACTTCCTGACGAAGGAGTTCTCCAGCGT 169 * **** ** * ***** * ** * * ***** * * ** ** * consensus_5459#0 GGGGGGGTTTGGTTTCGCGCCAGGATTCAAACGAACTGTCGGAAGCTAACCGTGATGGCA 958 consensus_5459#1 GTACGAG--CGGGAGCGTTTCGAGCGGCTGGAAAGCCTCAGCCACCCGGACCTCGTGCAA 227 * * * ** ** * * * * * * * * * * ** * consensus_5459#0 AGGGGCACCCCGGTGTGGGTAGCAATCAGGGCAATGGTACGGGGGTGCCAATGGCGACAG 1018 consensus_5459#1 GAGTACATAAAGCTCGCGATCGAGTACGAGCAGCTGGTGCGCCG----CAACGGCGTCAC 283 * ** * * * * * * * **** ** * *** **** ** consensus_5459#0 CGGCCACCATGAGCAATCGGACTGGGGAGGGGCGCTGCCGGCGCAAAAACCGCCGTCGCA 1078 consensus_5459#1 CGG--------------------------------------------------------- 286 *** consensus_5459#0 AGTCGAACCGCGGCAAATCGAGCTCGAACCGCCCGTACAGCAAGACCCAGTGGAAGTTTC 1138 consensus_5459#1 ------------------------------------------------------------ consensus_5459#0 AGTGTCCTCCCGGGGGGCAACCGGGTGGTGGTGGGTGGTGGAGGCCGCCCGGGTGGTGGT 1198 consensus_5459#1 ------------------------------------------------------------ consensus_5459#0 GCGGAGAGCAATTGCAACAAACGGCGCCATCTCTACTCGGTGGCGGCCTCGCGCCGCATC 1258 consensus_5459#1 ------------------------------------------------------------ consensus_5459#0 ACACCGTTTCCTGAAGTCCGATCAGCC 1285 consensus_5459#1 --------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||