These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_546#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 678 fasta sequence [GACCCACGCGTCCGCGGACGCGTGGGTCGGGTTCGACTTCTTGCGCAAGCTGCTCACTAGCAAAGACGTGCCGGATGATTGTCCCGCCTCGGTTTATCAGAGTGTGGCTCTTTCGATTCTGAGCTGCTTCTGCGATGACGAGCAGCTCGCCACGCACCAGGACATGCTAGACAGCATACCCGTGTTCATGGGGATCGTATCGACGTGCGACGACGACGAGTACGACGACAATCTGATCATTATCAACGAGGCGTACCACTGTCTGCAGAGCATTTCGCTGTACGAAAGTGGCCGGTTGGCGCTGCGCCAGCATGATGTCATCACGAAAATGGCGCAGATCTACACGCAGCGCAGCTTCCAGATCGATGAAGCACTCACGCTAATCGTGACACTGGTCGCCCGCTTTGGAGCGAACTCGTGGGACAACGATCCGAAGTTGTTCCATGCGCTGTTGCAGCGCGTTTCGCTCGACTTTGAAACCGACCACGCGGAGCGCAAGTTCGAGCTGGCGGAGATGATCAGCTCGCTGCTGTTCCACTGTCGCCGAGATCTGGTGGCCCGGACGGTGCAGGGCGAAATCTGGCCCGAATGCTTGTACAAGGGTATTAGCGATATTTTGAAAAGCAAAATCGGCAAGGCACAGCGCGATCCGGCCCTAAAGCTGGCAGCGAATGCGGT] [+] EMBL BM641398 [GACCCACGCGTCCGCGGACGCGTGGGTCGGGTTCGACTTCTTGCGCAAGCTGCTCACTAGCAAAGACGTGCCGGATGATTGTCCCGCCTCGGTTTATCAGAGTGTGGCTCTTTCGATTCTGAGCTGCTTCTGCGATGACGAGCAGCTCGCCACGCACCAGGACATGCTAGACAGCATACCCGTGTTCATGGGGATCGTATCGACGTGCGACGACGACGAGTACGACGACAATCTGATCATTATCAACGAGGCGTACCACTGTCTGCAGAGCATTTCGCTGTACGAAAGTGGCCGGTTGGCGCTGCGCCAGCATGATGTCATCACGAAAATGGCGCAGATCTACACGCAGCGCAGCTTCCAGATCGATGAAGCACTCACGCTAATCGTGACACTGGTCGCCCGCTTTGGAGCGAACTCGTGGGACAACGATCCGAAGTTGTTCCATGCGCTGTTGCAGCGCGTTTCGCTCGACTTTGAAACCGACCACGCGGAGCGCAAGTTCGAGCTGGCGGAGATGATCAGCTCGCTGCTGTTCCACTGTCGCCGAGATCTGGTGGCCCGGACGGTGCAGGGCGAAATCTGGCCCGAATGCTTGTACAAGGGTATTAGCGATATTTTGAAAAGCAAAATCGGCAAGGCACAGCGCGATCCGGCCCTAAAGCTGGCAGCGAATGCGGT] consensusID : consensus_546#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 643 fasta sequence [CCGAAAACTGAAAACAGTTCAATTAAGTAACGCAAAGAAACCACACGAAAAGTATCCCAAGTCGCAACAAAAATGTCAGGCGAAGTGAGTGAACCCATTAAAAAATGCTCGTTGATATTGAAAAATGCCAAGAGTGACACGGAAAAGTTTGCCGCCCTGTTCATGGTGACGAAACTGATCAAGGGGAAGGACTGCAACCAGGCCGGCAAACGGTTGCTGTTCGAGTCGATCGGGTTCGACTTCTTGCGCAAGCTGCTCACTAGCAAAGACGTGCCGGATGATTGTCCCGCCTCTGTTTATCAGAGTGTGGCTCTTTCGATTCTGAGCTGCTTCTGCGATGATGAGCAGCTCGCCACGCACCAGGACATGCTAGACAGCATACCCGTGTTCATGGGGATCCGTGTCGACGTGCGACGACGACGAGTACGACGACAATCTGATCATTATCAACGAGGCGTACCACTGTCTGCAGAGGCATTTCGCTGTACGAAAGGTGGCCGGTTGGCGCTGCGCCAGCATGATGTCATCACGAAAATGGCGCAGATCTACACGCAGCGCAGCTTCCAGATCGATGAAGCACTCACGCTAATCGTAACACTGGTCGCCCGCTTTGGAGCGAACTCGTGGGAAAACGAATCCGAAG] [+] EMBL BM621842 [CCGAAAACTGAAAACAGTTCAATTAAGTAACGCAAAGAAACCACACGAAAAGTATCCCAAGTCGCAACAAAAATGTCAGGCGAAGTGAGTGAACCCATTAAAAAATGCTCGTTGATATTGAAAAATGCCAAGAGTGACACGGAAAAGTTTGCCGCCCTGTTCATGGTGACGAAACTGATCAAGGGGAAGGACTGCAACCAGGCCGGCAAACGGTTGCTGTTCGAGTCGATCGGGTTCGACTTCTTGCGCAAGCTGCTCACTAGCAAAGACGTGCCGGATGATTGTCCCGCCTCTGTTTATCAGAGTGTGGCTCTTTCGATTCTGAGCTGCTTCTGCGATGATGAGCAGCTCGCCACGCACCAGGACATGCTAGACAGCATACCCGTGTTCATGGGGATCCGTGTCGACGTGCGACGACGACGAGTACGACGACAATCTGATCATTATCAACGAGGCGTACCACTGTCTGCAGAGGCATTTCGCTGTACGAAAGGTGGCCGGTTGGCGCTGCGCCAGCATGATGTCATCACGAAAATGGCGCAGATCTACACGCAGCGCAGCTTCCAGATCGATGAAGCACTCACGCTAATCGTAACACTGGTCGCCCGCTTTGGAGCGAACTCGTGGGAAAACGAATCCGAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_546#0 ------------------------------------------------------------ consensus_546#1 CCGAAAACTGAAAACAGTTCAATTAAGTAACGCAAAGAAACCACACGAAAAGTATCCCAA 60 consensus_546#0 ------------------------------------------------------------ consensus_546#1 GTCGCAACAAAAATGTCAGGCGAAGTGAGTGAACCCATTAAAAAATGCTCGTTGATATTG 120 consensus_546#0 ------------------------------------------------------------ consensus_546#1 AAAAATGCCAAGAGTGACACGGAAAAGTTTGCCGCCCTGTTCATGGTGACGAAACTGATC 180 consensus_546#0 --------------------GACC--CACGCGTCCGCGGA-CGCGTGGGTCGGGTTCGAC 37 consensus_546#1 AAGGGGAAGGACTGCAACCAGGCCGGCAAACGGTTGCTGTTCGAGTCGATCGGGTTCGAC 240 * ** ** ** ** * ** ** * *********** consensus_546#0 TTCTTGCGCAAGCTGCTCACTAGCAAAGACGTGCCGGATGATTGTCCCGCCTCGGTTTAT 97 consensus_546#1 TTCTTGCGCAAGCTGCTCACTAGCAAAGACGTGCCGGATGATTGTCCCGCCTCTGTTTAT 300 ***************************************************** ****** consensus_546#0 CAGAGTGTGGCTCTTTCGATTCTGAGCTGCTTCTGCGATGACGAGCAGCTCGCCACGCAC 157 consensus_546#1 CAGAGTGTGGCTCTTTCGATTCTGAGCTGCTTCTGCGATGATGAGCAGCTCGCCACGCAC 360 ***************************************** ****************** consensus_546#0 CAGGACATGCTAGACAGCATACCCGTGTTCATGGGGATC-GTATCGACGTGCGACGACGA 216 consensus_546#1 CAGGACATGCTAGACAGCATACCCGTGTTCATGGGGATCCGTGTCGACGTGCGACGACGA 420 *************************************** ** ***************** consensus_546#0 CGAGTACGACGACAATCTGATCATTATCAACGAGGCGTACCACTGTCTGCAGAG-CATTT 275 consensus_546#1 CGAGTACGACGACAATCTGATCATTATCAACGAGGCGTACCACTGTCTGCAGAGGCATTT 480 ****************************************************** ***** consensus_546#0 CGCTGTACGAAAG-TGGCCGGTTGGCGCTGCGCCAGCATGATGTCATCACGAAAATGGCG 334 consensus_546#1 CGCTGTACGAAAGGTGGCCGGTTGGCGCTGCGCCAGCATGATGTCATCACGAAAATGGCG 540 ************* ********************************************** consensus_546#0 CAGATCTACACGCAGCGCAGCTTCCAGATCGATGAAGCACTCACGCTAATCGTGACACTG 394 consensus_546#1 CAGATCTACACGCAGCGCAGCTTCCAGATCGATGAAGCACTCACGCTAATCGTAACACTG 600 ***************************************************** ****** consensus_546#0 GTCGCCCGCTTTGGAGCGAACTCGTGGGACAACGA-TCCGAAGTTGTTCCATGCGCTGTT 453 consensus_546#1 GTCGCCCGCTTTGGAGCGAACTCGTGGGAAAACGAATCCGAAG----------------- 643 ***************************** ***** ******* consensus_546#0 GCAGCGCGTTTCGCTCGACTTTGAAACCGACCACGCGGAGCGCAAGTTCGAGCTGGCGGA 513 consensus_546#1 ------------------------------------------------------------ consensus_546#0 GATGATCAGCTCGCTGCTGTTCCACTGTCGCCGAGATCTGGTGGCCCGGACGGTGCAGGG 573 consensus_546#1 ------------------------------------------------------------ consensus_546#0 CGAAATCTGGCCCGAATGCTTGTACAAGGGTATTAGCGATATTTTGAAAAGCAAAATCGG 633 consensus_546#1 ------------------------------------------------------------ consensus_546#0 CAAGGCACAGCGCGATCCGGCCCTAAAGCTGGCAGCGAATGCGGT 678 consensus_546#1 --------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||