cluster # 546

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Anopheles gambiae
cluster # 546 cluster # 546 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_546#0 length = 678 sequences # 1

consensus_546#1 length = 643 sequences # 1

consensusID : consensus_546#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 678
fasta sequence

                              [GACCCACGCGTCCGCGGACGCGTGGGTCGGGTTCGACTTCTTGCGCAAGCTGCTCACTAGCAAAGACGTGCCGGATGATTGTCCCGCCTCGGTTTATCAGAGTGTGGCTCTTTCGATTCTGAGCTGCTTCTGCGATGACGAGCAGCTCGCCACGCACCAGGACATGCTAGACAGCATACCCGTGTTCATGGGGATCGTATCGACGTGCGACGACGACGAGTACGACGACAATCTGATCATTATCAACGAGGCGTACCACTGTCTGCAGAGCATTTCGCTGTACGAAAGTGGCCGGTTGGCGCTGCGCCAGCATGATGTCATCACGAAAATGGCGCAGATCTACACGCAGCGCAGCTTCCAGATCGATGAAGCACTCACGCTAATCGTGACACTGGTCGCCCGCTTTGGAGCGAACTCGTGGGACAACGATCCGAAGTTGTTCCATGCGCTGTTGCAGCGCGTTTCGCTCGACTTTGAAACCGACCACGCGGAGCGCAAGTTCGAGCTGGCGGAGATGATCAGCTCGCTGCTGTTCCACTGTCGCCGAGATCTGGTGGCCCGGACGGTGCAGGGCGAAATCTGGCCCGAATGCTTGTACAAGGGTATTAGCGATATTTTGAAAAGCAAAATCGGCAAGGCACAGCGCGATCCGGCCCTAAAGCTGGCAGCGAATGCGGT]

[+] EMBL BM641398             [GACCCACGCGTCCGCGGACGCGTGGGTCGGGTTCGACTTCTTGCGCAAGCTGCTCACTAGCAAAGACGTGCCGGATGATTGTCCCGCCTCGGTTTATCAGAGTGTGGCTCTTTCGATTCTGAGCTGCTTCTGCGATGACGAGCAGCTCGCCACGCACCAGGACATGCTAGACAGCATACCCGTGTTCATGGGGATCGTATCGACGTGCGACGACGACGAGTACGACGACAATCTGATCATTATCAACGAGGCGTACCACTGTCTGCAGAGCATTTCGCTGTACGAAAGTGGCCGGTTGGCGCTGCGCCAGCATGATGTCATCACGAAAATGGCGCAGATCTACACGCAGCGCAGCTTCCAGATCGATGAAGCACTCACGCTAATCGTGACACTGGTCGCCCGCTTTGGAGCGAACTCGTGGGACAACGATCCGAAGTTGTTCCATGCGCTGTTGCAGCGCGTTTCGCTCGACTTTGAAACCGACCACGCGGAGCGCAAGTTCGAGCTGGCGGAGATGATCAGCTCGCTGCTGTTCCACTGTCGCCGAGATCTGGTGGCCCGGACGGTGCAGGGCGAAATCTGGCCCGAATGCTTGTACAAGGGTATTAGCGATATTTTGAAAAGCAAAATCGGCAAGGCACAGCGCGATCCGGCCCTAAAGCTGGCAGCGAATGCGGT]




>consensus_546#0
GACCCACGCGTCCGCGGACGCGTGGGTCGGGTTCGACTTCTTGCGCAAGCTGCTCACTAG
CAAAGACGTGCCGGATGATTGTCCCGCCTCGGTTTATCAGAGTGTGGCTCTTTCGATTCT
GAGCTGCTTCTGCGATGACGAGCAGCTCGCCACGCACCAGGACATGCTAGACAGCATACC
CGTGTTCATGGGGATCGTATCGACGTGCGACGACGACGAGTACGACGACAATCTGATCAT
TATCAACGAGGCGTACCACTGTCTGCAGAGCATTTCGCTGTACGAAAGTGGCCGGTTGGC
GCTGCGCCAGCATGATGTCATCACGAAAATGGCGCAGATCTACACGCAGCGCAGCTTCCA
GATCGATGAAGCACTCACGCTAATCGTGACACTGGTCGCCCGCTTTGGAGCGAACTCGTG
GGACAACGATCCGAAGTTGTTCCATGCGCTGTTGCAGCGCGTTTCGCTCGACTTTGAAAC
CGACCACGCGGAGCGCAAGTTCGAGCTGGCGGAGATGATCAGCTCGCTGCTGTTCCACTG
TCGCCGAGATCTGGTGGCCCGGACGGTGCAGGGCGAAATCTGGCCCGAATGCTTGTACAA
GGGTATTAGCGATATTTTGAAAAGCAAAATCGGCAAGGCACAGCGCGATCCGGCCCTAAA
GCTGGCAGCGAATGCGGT

consensusID : consensus_546#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 643
fasta sequence

                              [CCGAAAACTGAAAACAGTTCAATTAAGTAACGCAAAGAAACCACACGAAAAGTATCCCAAGTCGCAACAAAAATGTCAGGCGAAGTGAGTGAACCCATTAAAAAATGCTCGTTGATATTGAAAAATGCCAAGAGTGACACGGAAAAGTTTGCCGCCCTGTTCATGGTGACGAAACTGATCAAGGGGAAGGACTGCAACCAGGCCGGCAAACGGTTGCTGTTCGAGTCGATCGGGTTCGACTTCTTGCGCAAGCTGCTCACTAGCAAAGACGTGCCGGATGATTGTCCCGCCTCTGTTTATCAGAGTGTGGCTCTTTCGATTCTGAGCTGCTTCTGCGATGATGAGCAGCTCGCCACGCACCAGGACATGCTAGACAGCATACCCGTGTTCATGGGGATCCGTGTCGACGTGCGACGACGACGAGTACGACGACAATCTGATCATTATCAACGAGGCGTACCACTGTCTGCAGAGGCATTTCGCTGTACGAAAGGTGGCCGGTTGGCGCTGCGCCAGCATGATGTCATCACGAAAATGGCGCAGATCTACACGCAGCGCAGCTTCCAGATCGATGAAGCACTCACGCTAATCGTAACACTGGTCGCCCGCTTTGGAGCGAACTCGTGGGAAAACGAATCCGAAG]

[+] EMBL BM621842             [CCGAAAACTGAAAACAGTTCAATTAAGTAACGCAAAGAAACCACACGAAAAGTATCCCAAGTCGCAACAAAAATGTCAGGCGAAGTGAGTGAACCCATTAAAAAATGCTCGTTGATATTGAAAAATGCCAAGAGTGACACGGAAAAGTTTGCCGCCCTGTTCATGGTGACGAAACTGATCAAGGGGAAGGACTGCAACCAGGCCGGCAAACGGTTGCTGTTCGAGTCGATCGGGTTCGACTTCTTGCGCAAGCTGCTCACTAGCAAAGACGTGCCGGATGATTGTCCCGCCTCTGTTTATCAGAGTGTGGCTCTTTCGATTCTGAGCTGCTTCTGCGATGATGAGCAGCTCGCCACGCACCAGGACATGCTAGACAGCATACCCGTGTTCATGGGGATCCGTGTCGACGTGCGACGACGACGAGTACGACGACAATCTGATCATTATCAACGAGGCGTACCACTGTCTGCAGAGGCATTTCGCTGTACGAAAGGTGGCCGGTTGGCGCTGCGCCAGCATGATGTCATCACGAAAATGGCGCAGATCTACACGCAGCGCAGCTTCCAGATCGATGAAGCACTCACGCTAATCGTAACACTGGTCGCCCGCTTTGGAGCGAACTCGTGGGAAAACGAATCCGAAG]




>consensus_546#1
CCGAAAACTGAAAACAGTTCAATTAAGTAACGCAAAGAAACCACACGAAAAGTATCCCAA
GTCGCAACAAAAATGTCAGGCGAAGTGAGTGAACCCATTAAAAAATGCTCGTTGATATTG
AAAAATGCCAAGAGTGACACGGAAAAGTTTGCCGCCCTGTTCATGGTGACGAAACTGATC
AAGGGGAAGGACTGCAACCAGGCCGGCAAACGGTTGCTGTTCGAGTCGATCGGGTTCGAC
TTCTTGCGCAAGCTGCTCACTAGCAAAGACGTGCCGGATGATTGTCCCGCCTCTGTTTAT
CAGAGTGTGGCTCTTTCGATTCTGAGCTGCTTCTGCGATGATGAGCAGCTCGCCACGCAC
CAGGACATGCTAGACAGCATACCCGTGTTCATGGGGATCCGTGTCGACGTGCGACGACGA
CGAGTACGACGACAATCTGATCATTATCAACGAGGCGTACCACTGTCTGCAGAGGCATTT
CGCTGTACGAAAGGTGGCCGGTTGGCGCTGCGCCAGCATGATGTCATCACGAAAATGGCG
CAGATCTACACGCAGCGCAGCTTCCAGATCGATGAAGCACTCACGCTAATCGTAACACTG
GTCGCCCGCTTTGGAGCGAACTCGTGGGAAAACGAATCCGAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_546#0      ------------------------------------------------------------
consensus_546#1      CCGAAAACTGAAAACAGTTCAATTAAGTAACGCAAAGAAACCACACGAAAAGTATCCCAA 60
                                                                                 

consensus_546#0      ------------------------------------------------------------
consensus_546#1      GTCGCAACAAAAATGTCAGGCGAAGTGAGTGAACCCATTAAAAAATGCTCGTTGATATTG 120
                                                                                 

consensus_546#0      ------------------------------------------------------------
consensus_546#1      AAAAATGCCAAGAGTGACACGGAAAAGTTTGCCGCCCTGTTCATGGTGACGAAACTGATC 180
                                                                                 

consensus_546#0      --------------------GACC--CACGCGTCCGCGGA-CGCGTGGGTCGGGTTCGAC 37
consensus_546#1      AAGGGGAAGGACTGCAACCAGGCCGGCAAACGGTTGCTGTTCGAGTCGATCGGGTTCGAC 240
                                         * **  **  **   ** *  ** ** * ***********

consensus_546#0      TTCTTGCGCAAGCTGCTCACTAGCAAAGACGTGCCGGATGATTGTCCCGCCTCGGTTTAT 97
consensus_546#1      TTCTTGCGCAAGCTGCTCACTAGCAAAGACGTGCCGGATGATTGTCCCGCCTCTGTTTAT 300
                     ***************************************************** ******

consensus_546#0      CAGAGTGTGGCTCTTTCGATTCTGAGCTGCTTCTGCGATGACGAGCAGCTCGCCACGCAC 157
consensus_546#1      CAGAGTGTGGCTCTTTCGATTCTGAGCTGCTTCTGCGATGATGAGCAGCTCGCCACGCAC 360
                     ***************************************** ******************

consensus_546#0      CAGGACATGCTAGACAGCATACCCGTGTTCATGGGGATC-GTATCGACGTGCGACGACGA 216
consensus_546#1      CAGGACATGCTAGACAGCATACCCGTGTTCATGGGGATCCGTGTCGACGTGCGACGACGA 420
                     *************************************** ** *****************

consensus_546#0      CGAGTACGACGACAATCTGATCATTATCAACGAGGCGTACCACTGTCTGCAGAG-CATTT 275
consensus_546#1      CGAGTACGACGACAATCTGATCATTATCAACGAGGCGTACCACTGTCTGCAGAGGCATTT 480
                     ****************************************************** *****

consensus_546#0      CGCTGTACGAAAG-TGGCCGGTTGGCGCTGCGCCAGCATGATGTCATCACGAAAATGGCG 334
consensus_546#1      CGCTGTACGAAAGGTGGCCGGTTGGCGCTGCGCCAGCATGATGTCATCACGAAAATGGCG 540
                     ************* **********************************************

consensus_546#0      CAGATCTACACGCAGCGCAGCTTCCAGATCGATGAAGCACTCACGCTAATCGTGACACTG 394
consensus_546#1      CAGATCTACACGCAGCGCAGCTTCCAGATCGATGAAGCACTCACGCTAATCGTAACACTG 600
                     ***************************************************** ******

consensus_546#0      GTCGCCCGCTTTGGAGCGAACTCGTGGGACAACGA-TCCGAAGTTGTTCCATGCGCTGTT 453
consensus_546#1      GTCGCCCGCTTTGGAGCGAACTCGTGGGAAAACGAATCCGAAG----------------- 643
                     ***************************** ***** *******                 

consensus_546#0      GCAGCGCGTTTCGCTCGACTTTGAAACCGACCACGCGGAGCGCAAGTTCGAGCTGGCGGA 513
consensus_546#1      ------------------------------------------------------------
                                                                                 

consensus_546#0      GATGATCAGCTCGCTGCTGTTCCACTGTCGCCGAGATCTGGTGGCCCGGACGGTGCAGGG 573
consensus_546#1      ------------------------------------------------------------
                                                                                 

consensus_546#0      CGAAATCTGGCCCGAATGCTTGTACAAGGGTATTAGCGATATTTTGAAAAGCAAAATCGG 633
consensus_546#1      ------------------------------------------------------------
                                                                                 

consensus_546#0      CAAGGCACAGCGCGATCCGGCCCTAAAGCTGGCAGCGAATGCGGT 678
consensus_546#1      ---------------------------------------------