These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5463#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 802 fasta sequence [CGACCCACGCGTCCGACACACTACGCAAAATAACTAACATTTGTCGGCTTTGTTTGTGCGAAGAGCTGGACATCCTAGTTCCTGCCGAGGATGTATTCGATTCCTCGCTTACCACGGAGGATGTGGAACGCTTCACCGGTGTACAGATCCCGGCCGATGACAAAGTACCTTACGTGATCTGCACCGACTGTAGAAGTAGTTTAAGAAAATCAGCTGCCTTTCGGAAGTCTTGCGTACGCAATGATCGACTCTATTGCCAATTGTTCTCGGAATTGATCGTCGAGATTCGGAACGAAACGAATCGAAAGCAACCTGCAACGATTGTTCATCACACACCCGATGATGATATCGATGTTACGGTTTTCACCCACCCCGTTCATCCAAAGCAACTGTCTGCTTCTGAGAACAAGCAGCTAGTTAGCGCTGATGAAAGAGATGAAAGAGAAAGCATTGAAACGGAAGCTACCCCTTTAAAATCAACACTCTCGTCTCCTCGCCCGGAACCGATGGCAATTGACGAAACAAGCAACCTGCAGGACCCACCAATACGCACTAGGAAACGACGCAAAAAGTATGCGAATCGTCATGTGGAATACCTGTGTGACATATGTGGCCAAACGACTACCAATTACAAACGACACCAGCTGACGCACACGAAAGAAGTACGAATCCCTTGCCCGCATTGTCCGATACAGATGACGGACAGCTCGAATCTTGCGCGCCACATCGAAGCCGTGCACATGCAGCTGATCATTAAAACGTGCGAATTGTGTGGTAAAGGATTCAAGCATCATAACAGCTA] [+] EMBL BM588588 [CGACCCACGCGTCCGACACACTACGCAAAATAACTAACATTTGTCGGCTTTGTTTGTGCGAAGAGCTGGACATCCTAGTTCCTGCCGAGGATGTATTCGATTCCTCGCTTACCACGGAGGATGTGGAACGCTTCACCGGTGTACAGATCCCGGCCGATGACAAAGTACCTTACGTGATCTGCACCGACTGTAGAAGTAGTTTAAGAAAATCAGCTGCCTTTCGGAAGTCTTGCGTACGCAATGATCGACTCTATTGCCAATTGTTCTCGGAATTGATCGTCGAGATTCGGAACGAAACGAATCGAAAGCAACCTGCAACGATTGTTCATCACACACCCGATGATGATATCGATGTTACGGTTTTCACCCACCCCGTTCATCCAAAGCAACTGTCTGCTTCTGAGAACAAGCAGCTAGTTAGCGCTGATGAAAGAGATGAAAGAGAAAGCATTGAAACGGAAGCTACCCCTTTAAAATCAACACTCTCGTCTCCTCGCCCGGAACCGATGGCAATTGACGAAACAAGCAACCTGCAGGACCCACCAATACGCACTAGGAAACGACGCAAAAAGTATGCGAATCGTCATGT ] [+] EMBL BX607079 [ CTACGCAAAATAACTAACATTTGTCGGCTTTGTTTGTGCGAAGAGCTGGACATCCTAGTTCCTGCCGAGGATGTATTCGATTCCTCTCTTACCACGGAGGATGTGGAACGCTTCACCGGTGTACAGATCCCGGCTGATGACAAAGTACCTTACGTGATCTGCACCGATTGTAGAAGTAGTTTAAGAAAATCAGCTGCCTTTCGGAAGTCTTGCGTACGCAACGATCGACTCTATTGCCAATTGTTCTCGGAATTGATCGTCGAGATTCGGAACGAAACGCATCGAAAGCAACCTGCAACGATTGTTCATCACACACCCGATGATGATATCGATGTTACGGTTTTCACCCACCCCGTTCATCCAAAGCAACTGTCTGCTTCTGAGAACAAGCAGCTAGTTAGCGCTGATGAAAGAGAT TTG GAAAGCATTGAAACAGAAGCTACCCTTTTAAAATCAACACTCTCGTCTCCTCACCCGGAACCGATGGCAATTGACGAAACAAGCAACCTTCAGGACCCACCAATACGCACTAGGAAACGACGCAAAAAGTATGCGAATCGTCATGTGGAATACCTGTGTGACATATGTGGCCAAACGACTACCAATTACAAACGACACCAGCTGACGCACACGAAAGAAGTACGAATCCCTTGCCCGCATTGTCCGATACAGATGACGGACAGCTCGAATCTTGCGCGCCACATCGAAGCCGTGCACATGCAGCTGATCATTAAAACGTGCGAATTGTGTGGTAAAGGATTCAAGCATCATAACAGCTA] consensusID : consensus_5463#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 634 fasta sequence [CCGCCCACGCGTCCGGGAATACCTGTGTGACATATGTGGCCAAACGACTACCAATTACAAACGACACCAGCTGACGCACACGAAAGAAGTACGAATCCCTTGCCCGCATTGTCCGATACAGATGACGGACAGCTCGAATCTTGCGCGCCACATCGAAGCCGTGCACATGCAGCTGATCATTAAAACGTGCGAATTGTGTGGTAAAGGATTCAAGCATCATAACAGCTACAATGCTCATATGCGTGGCGTGCATAATGTTGGGGAAAAATACAAATGCAAGATATGCTACAAAGAGTTCAACAGTACACGTAGCATACAGGAACATACCAGGCGTCGGCATAGTATCGAAACTAAATTTGAATGCAAGGATTGCAGTAAGCGGTTTAAGTGCGGAAGGTCGCTGTATATACACAAACGAGTACATTCCGACAACCGGCCGTATGCTTGCAGCCACTGTCCGAAACGGTTCAAGAGCAGCTTCGGCCGCAATACGCATCAACTCACCCACACGGGCATTATATTTTCCTGCCAGCATTGTGATAAGTCCTATCGGTACAAGGCTCAACTTAACATGCACATGCGAAAACTTCACCCGGAGTTGTTTGCCGAAAACACGGACGGATCTGGTGGACCG] [+] EMBL BM575956 [CCGCCCACGCGTCCGGGAATACCTGTGTGACATATGTGGCCAAACGACTACCAATTACAAACGACACCAGCTGACGCACACGAAAGAAGTACGAATCCCTTGCCCGCATTGTCCGATACAGATGACGGACAGCTCGAATCTTGCGCGCCACATCGAAGCCGTGCACATGCAGCTGATCATTAAAACGTGCGAATTGTGTGGTAAAGGATTCAAGCATCATAACAGCTACAATGCTCATATGCGTGGCGTGCATAATGTTGGGGAAAAATACAAATGCAAGATATGCTACAAAGAGTTCAACAGTACACGTAGCATACAGGAACATACCAGGCGTCGGCATAGTATCGAAACTAAATTTGAATGCAAGGATTGCAGTAAGCGGTTTAAGTGCGGAAGGTCGCTGTATATACACAAACGAGTACATTCCGACAACCGGCCGTATGCTTGCAGCCACTGTCCGAAACGGTTCAAGAGCAGCTTCGGCCGCAATACGCATCAACTCACCCACACGGGCATTATATTTTCCTGCCAGCATTGTGATAAGTCCTATCGGTACAAGGCTCAACTTAACATGCACATGCGAAAACTTCACCCGGAGTTGTTTGCCGAAAACACGGACGGATCTGGTGGACCG] consensusID : consensus_5463#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 393 fasta sequence [ACACTTTACGTGAAATAACTAACATTTGTCGGCTTTGTTTGTGCGAAGAGCTGGACATCCTAGTTCCTGCCAAGAATGTATTTGATTCTTTGCTTACCTCGGAGGATGTGGAACATTTTACCAGCATACAGATCCCAACCGATGACAACGTACCTTACGTGATCTGCACCGATTGTAGAAATGGTTTAAGAAAATCAGTTGCCTTTCGGAAGTCTTGCGTACGCAACGATCGAATCTATCAGCAAATGTTCTCACAATTCATAGCCGAGACTAGGCACGAAACGGATCGAAAGCTACCGCCTGCCACTGTTCACCTCAAATCGGAAGATGATTTCGATGAATGCGAGCATGAATTTCTCGATGAAATTGAAAATGTAAACTGCGATGATACTG] [+] EMBL BX606425 [ACACTTTACGTGAAATAACTAACATTTGTCGGCTTTGTTTGTGCGAAGAGCTGGACATCCTAGTTCCTGCCAAGAATGTATTTGATTCTTTGCTTACCTCGGAGGATGTGGAACATTTTACCAGCATACAGATCCCAACCGATGACAACGTACCTTACGTGATCTGCACCGATTGTAGAAATGGTTTAAGAAAATCAGTTGCCTTTCGGAAGTCTTGCGTACGCAACGATCGAATCTATCAGCAAATGTTCTCACAATTCATAGCCGAGACTAGGCACGAAACGGATCGAAAGCTACCGCCTGCCACTGTTCACCTCAAATCGGAAGATGATTTCGATGAATGCGAGCATGAATTTCTCGATGAAATTGAAAATGTAAACTGCGATGATACTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5463#0 CGACCCACGCGTCCGACACACTACGCAAAA--TAACTAACATTTGTCGGCTTTGTTTGTG 58 consensus_5463#2 ---------------ACACTTTACGTGAAA--TAACTAACATTTGTCGGCTTTGTTTGTG 43 consensus_5463#1 ---------CCGCCCACGCGTCCGGGAATACCTGTGTGACATATGT-GGCCAAACGACTA 50 ** * * * * * * **** *** *** * consensus_5463#0 CGAAGAGCTGGACATCCTAGTTCCTGC-CGAGGATGTATTC--GATTCCTCGCTTACCAC 115 consensus_5463#2 CGAAGAGCTGGACATCCTAGTTCCTGC-CAAGAATGTATTT--GATTCTTTGCTTACCTC 100 consensus_5463#1 CCAATTACAAACGACACCAGCTGACGCACACGAAAGAAGTACGAATCCCTTGCCCGCATT 110 * ** * * * ** * ** * * * * * * ** * * ** * consensus_5463#0 GGAGGATGTGGA------ACGCTTCA---CCGGTGTACAGATCCCGGCCGATGACAAAGT 166 consensus_5463#2 GGAGGATGTGGA------ACATTTTA---CCAGCATACAGATCCCAACCGATGACAACGT 151 consensus_5463#1 GTCCGATACAGATGACGGACAGCTCGAATCTTGCGCGCCACATCGAAGCCGTGCACATGC 170 * *** ** ** * * * * * * ** * * consensus_5463#0 ACCTTACG--TGATCTGCACCGACTGTAG---AAGTAGTTTAAGAAA---ATCAGCTGCC 218 consensus_5463#2 ACCTTACG--TGATCTGCACCGATTGTAG---AAATGGTTTAAGAAA---ATCAGTTGCC 203 consensus_5463#1 AGCTGATCATTAAAACGTGCGAATTGTGTGGTAAAGGATTCAAGCATCATAACAGCTACA 230 * ** * * * * * * *** ** ** *** * * *** * * consensus_5463#0 TT--TCGGAAGTCTTGCGTACGCAATGATCGACTCTATTGCCAATTGTT---CTCGGAAT 273 consensus_5463#2 TT--TCGGAAGTCTTGCGTACGCAACGATCGAATCTATCAGCAAATGTT---CTCACAAT 258 consensus_5463#1 ATGCTCATATGCGTGGCGTGCATAATGTTGGGGAAAAATA-CAAATGCAAGATATGCTAC 289 * ** * * * **** * ** * * * * *** ** * consensus_5463#0 TGATCGTCGAGATTCGGAACGAAACGAATCGAAAGCAACCTGCAACGATTGTTCATCACA 333 consensus_5463#2 TCATAGCCGAGACTAGGCACGAAACGGATCGAAAGCTACCGCCTGCCACTGTTCACCTCA 318 consensus_5463#1 AAAGAGTTCA-ACAGTACACGTAGCATACAGGAACATACCAGGCGTCGGCATA-GTATCG 347 * * * * *** * * * * ** *** * * consensus_5463#0 CACCCGATGATGATATCGATGT-TACGGTTT-TCACCCACCCCGTTCATCCAAAGCAACT 391 consensus_5463#2 AATCGGAAGATGATTTCGATGAATGCGAGCA-TGAATTTCTCGATGAAATTGAAAATGTA 377 consensus_5463#1 AAACTAAATTTGAATGCAAGGATTGCAGTAAGCGGTTTAAGTGCGGAAGGTCGCTGTATA 407 * * * *** * * * * * * consensus_5463#0 GTCTGCTTCTGAGAACAAGCAGCTAGTTAGCGCTGATGAAAGAGATGAAAGAGAAAGCAT 451 consensus_5463#2 AACTGCGA-TGATACTG------------------------------------------- 393 consensus_5463#1 TAC-ACAAACGAGTACATTCCGACAACCGGCCGTATGCTTGCAGCCACTGTCCGAAACGG 466 * * ** consensus_5463#0 TGAAACGGAAGCTACCCCTTTAAAATCAACACTCTCGTCTCCTCGCCCGGAACCGATGGC 511 consensus_5463#2 ------------------------------------------------------------ consensus_5463#1 TTCAAGAGCAGCTTCGGCCGCAATACGCATCAACTCACCCACACGGGCATTATATTTTCC 526 consensus_5463#0 AATTGACGAAACAAGCAACCTGCAGGACCCACCAATACGCACTAGGAAACGACGCAAAAA 571 consensus_5463#2 ------------------------------------------------------------ consensus_5463#1 TGCCAGCATTGTGATAAGTCCTATCGGTACAAGGCTCAACTTAACATGCACATGCGAAAA 586 consensus_5463#0 GTATGCGAATCGTCATGTGGAATACCTGTGTGACATATGTGGCCAAACGACTACCAATTA 631 consensus_5463#2 ------------------------------------------------------------ consensus_5463#1 CTTCACCCGGAGTTGTTTGCCGAAAACACG-GACGGATCTGGTGGACCG----------- 634 consensus_5463#0 CAAACGACACCAGCTGACGCACACGAAAGAAGTACGAATCCCTTGCCCGCATTGTCCGAT 691 consensus_5463#2 ------------------------------------------------------------ consensus_5463#1 ------------------------------------------------------------ consensus_5463#0 ACAGATGACGGACAGCTCGAATCTTGCGCGCCACATCGAAGCCGTGCACATGCAGCTGAT 751 consensus_5463#2 ------------------------------------------------------------ consensus_5463#1 ------------------------------------------------------------ consensus_5463#0 CATTAAAACGTGCGAATTGTGTGGTAAAGGATTCAAGCATCATAACAGCTA 802 consensus_5463#2 --------------------------------------------------- consensus_5463#1 --------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||