These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5466#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 924 fasta sequence [CCGCCCACGCGTCCGCACAGAACCACCATCGTAGCAATTTTGGCATCATTTTGCTAAAATGGGTGAAATATGTCGTCTTTGCCTGGACTCGCTGCCCAAATGTACCGGAATATCGATAAAAAATGAACAATTTAAGGAAGAGTTGAAGGCTGCTTTTCGTTTTGAAATTGATTATAAATCTAACCTACCGGAGCTTGTGTGTGATCGATGCCGAGATACAGTTTCGCATATACACACCTACATCCAGGATGTGTGGTCCAACCAGCAGAGTTTGCTCTTAGAGGCTAACACTACTGTCGTTCAGCCAGAGGAATATTTGGTCGAGAAAGACGTAAGTGACACAAAGTTGTTTGAAAAGGAAGAACTGCCAAAGATGCAGGAACCCGGCGTAGTACAGGATCTGCAGATTGAGTTCGTTCAGCCTGATCCGGATCCGATCGGTTTGAATGATGACGATGCTAACGAAAAACGCAACATTGCCAGTAGTGAGGACGACGATGATACGCTGCAAGTGAAGGAAAAGGAACCGGCGGAAACGGCGGAAACGGCGGATCAACCCAGTAGCAAGAAGGCTAAGACATCGGTCTCCAATAAACCGAAAAAGACGCGTGCAAATCGAAAGGAAAACGACAAGATCATCGACGAGTTTTACACCATGGCAGTGTGAGATCTGTTCGGCACCTGCAAATAACTTTGGGACGTTGGTAAACCATTACCGTGCGGAGCACGATATAAAGGGCTACGTGCGGTGCTGCGATAAGCAGTACTTTAATCGGTCCTACCTGGTAGACCACATTGCATCGCACAAAGGATTAACGCGGTGCGAGATTTGCGACCGTACTTACAAAACAATGCGCTACCTGAACCAGCACATGAGTGAGAGTCACAGCCAGCGAGATGCAAAACCATTCAAATGTACCCAAT] [+] EMBL BM583001 [CCGCCCACGCGTCCGCACAGAACCACCATCGTAGCAATTTTGGCATCATTTTGCTAAAATGGGTGAAATATGTCGTCTTTGCCTGGACTCGCTGCCCAAATGTACCGGAATATCGATAAAAAATGAACAATTTAAGGAAGAGTTGAAGGCTGCTTTTCGTTTTGAAATTGATTATAAATCTAACCTACCGGAGCTTGTGTGTGATCGATGCCGAGATACAGTTTCGCATATACACACCTACATCCAGGATGTGTGGTCCAACCAGCAGAGTTTGCTCTTAGAGGCTAACACTACTGTCGTTCAGCCAGAGGAATATTTGGTCGAGAAAGACGTAAGTGACACAAAGTTGTTTGAAAAGGAAGAACTGCCAAAGATGCAGGAACCCGGCGTAGTACAGGATCTGCAGATTGAGTTCGTTCAGCCTGATCCGGATCCGATCGGTTTGAATGATGACGATGCTAACGAAAAACGCAACATTGCCAGTAGTGAGGACGACGATGATACGCTGCAAGTGAAGGAAAAGGAACCGGCGGAAACGGCGGAAACGGCGGATCAACCCAGTAGCAAGAAGGCTAAGACATCGGTCTCCAATAAACCGAAAAAGACGCGTGCAAATCGAAAGGAAAACGACAAGATCATCGACGAGTTTTACACCATGGCAGTGTGAGATCTGTTCGGCACCTGCAAATAACTTTGGGACGTTGGTAAA ] [+] EMBL BM632399 [ ccgAGCAATTTTGGCATCATTTTGCTAAAATGGGTGAAATATGTCGTCTTTGCCTGGACTCGCTGCCCAAATGTACCGGAATATCGATAAAAAATGAACAATTTAAGGAAGAGTTGAAGGCTGCTTTTCGTTTTGAAATTGATTATAAATCTAACCTACCGGAGCTTGTGTGTGATCGATGCCGAGATACAGTTTCGCATATACACACCTACATCCAGGATGTGTGGTCCAACCAGCAGAGTTTGCTCTTAGAGGCTAACACTACTGTCGTTCAGCCAGAGGAATATTTGGTCGAGAAAGACGTAAGTGACACAAAGTTGTTTGAAAAGGAAGAACTGCCAAAGATGCAGGAACCCGGCGTAGTACAGGATCTGCAGATTGAGTTCGTTCAGCCTGATCCGGATCCGATCGGTTTGAATGATGACGATGCTAACGAAAAACGCAACATTGCCAGTAGTGAGGACGACGATGATACGCTGCAAGTGAAGGAAAAGGAACCGGCGGAAACGGCGGAAACGGCGGATCAACCCAGTAGCAAGAAGGCTAAGACATCGGTCTCCAATAAACCGAAAAAGACGCGTGCAAATCGAAAGG ] [+] EMBL BM576165 [ ccGCAGAGTTTGCTCTTAGAGGCTAACACTACTGTCGTTCAGCCAGAGGAATATTTGGTCGAGAAAGACGTAAGTGACACAAAGTTGTTTGAAAAGGAAGAACTGCCAAAGATACAGGAACCCGGCGTAGTACAGGATCTGCAGATTGAGTTCGTTCAGCCTGATCCGGATCCGATCGGTTTGAATGATGACGATGCTAACGAAAAACGCAACATTGCCAGTAGTGAGGACGACGATGATACGCTGCAAGTGAAGGAAAAGGAACCGGCGGAAACGGCGGAAACGGCGGATCAACCCAGTAGCAAGAAGGCTAAGACATCGGTCTCCGATAAACCGAAAAAGACGCGTGCAAATCGAAAGGAAAACGACAAGATCATCGACGAGTTTTACACCATGG AGTGTGAGATCTGTTCGGCACCTGCAAATAACTTTGGGACGTTGATAAACCATTACCGTGCGGAGCACGATATAAAGGGCTACGTGCGGTGCTGCGATAAGCAGTACTTTAATCGGTCCTACCTGGTAGACCACATTGCATCGCACAAAGGATTAACGCGGTGCGAGATTTGCGACCGTACTTACAAAACAATGCGCTACCTGAACCAGCACATGAGTGAGAGTCACAGCCAGCGAGATGCAAAACCATTCAAATGTACCCAAT] consensusID : consensus_5466#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 618 fasta sequence [CCGGAAACAGTAAACACATAACCACCATCGTAGCAATTTTGGCATCATTTTGCTAAAATGGGTGAAATATGTCGTCTTTGCCTGGACTCGCTGCCCAAATGTACCGGAATATCGATAAAAAATGAACAATTTAAGGAAGAGTTGAAGGCTGCTTTTCGTTTTGAAATTGATTATAAATCTAACCTACCGGAGCTTGTGTGTGATCGATGCCGAGACACAGTTTCGCATATACACACCTACATCCAGGATGTGTGGTCCAACCAGCAGAGTTTGCTCTTAGAGGCTAACACTACTGTCGTTCAGCCAGAGGAATATTTGGTCGAGAAAGACGTAAGTGACACAAAGTTGTTTGAAAAGGAAGAACTGCCAAAGATACAGGAACCCGGCGTAGTACAGGATCTGCAGATTGAGTTCGTTCAGCCTGATCCGGATCCGATCGGTTTGAATGATGACGATGCTAACGAAAAACGCAACATTGCCAGTAGTGAGGACGACGATGATACGCTGCAAGTGAAGGAAAAGGAACCGGCGGAAACGGCGGAAACGGCGGATCAACCCAGTAGCAAGAAGGCTAAGACATCGGTCTCCGATAAACCGAAAAAGACGCGTGCAAATCGA] [+] EMBL BM595662 [CCGGAAACAGTAAACACATAACCACCATCGTAGCAATTTTGGCATCATTTTGCTAAAATGGGTGAAATATGTCGTCTTTGCCTGGACTCGCTGCCCAAATGTACCGGAATATCGATAAAAAATGAACAATTTAAGGAAGAGTTGAAGGCTGCTTTTCGTTTTGAAATTGATTATAAATCTAACCTACCGGAGCTTGTGTGTGATCGATGCCGAGACACAGTTTCGCATATACACACCTACATCCAGGATGTGTGGTCCAACCAGCAGAGTTTGCTCTTAGAGGCTAACACTACTGTCGTTCAGCCAGAGGAATATTTGGTCGAGAAAGACGTAAGTGACACAAAGTTGTTTGAAAAGGAAGAACTGCCAAAGATACAGGAACCCGGCGTAGTACAGGATCTGCAGATTGAGTTCGTTCAGCCTGATCCGGATCCGATCGGTTTGAATGATGACGATGCTAACGAAAAACGCAACATTGCCAGTAGTGAGGACGACGATGATACGCTGCAAGTGAAGGAAAAGGAACCGGCGGAAACGGCGGAAACGGCGGATCAACCCAGTAGCAAGAAGGCTAAGACATCGGTCTCCGATAAACCGAAAAAGACGCGTGCAAATCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5466#0 CCGCCCACGCGTCCGCACAGAACCACCATCGTAGCAATTTTGGCATCATTTTGCTAAAAT 60 consensus_5466#1 CCGGAAACA-GTAAACACATAACCACCATCGTAGCAATTTTGGCATCATTTTGCTAAAAT 59 *** ** ** **** **************************************** consensus_5466#0 GGGTGAAATATGTCGTCTTTGCCTGGACTCGCTGCCCAAATGTACCGGAATATCGATAAA 120 consensus_5466#1 GGGTGAAATATGTCGTCTTTGCCTGGACTCGCTGCCCAAATGTACCGGAATATCGATAAA 119 ************************************************************ consensus_5466#0 AAATGAACAATTTAAGGAAGAGTTGAAGGCTGCTTTTCGTTTTGAAATTGATTATAAATC 180 consensus_5466#1 AAATGAACAATTTAAGGAAGAGTTGAAGGCTGCTTTTCGTTTTGAAATTGATTATAAATC 179 ************************************************************ consensus_5466#0 TAACCTACCGGAGCTTGTGTGTGATCGATGCCGAGATACAGTTTCGCATATACACACCTA 240 consensus_5466#1 TAACCTACCGGAGCTTGTGTGTGATCGATGCCGAGACACAGTTTCGCATATACACACCTA 239 ************************************ *********************** consensus_5466#0 CATCCAGGATGTGTGGTCCAACCAGCAGAGTTTGCTCTTAGAGGCTAACACTACTGTCGT 300 consensus_5466#1 CATCCAGGATGTGTGGTCCAACCAGCAGAGTTTGCTCTTAGAGGCTAACACTACTGTCGT 299 ************************************************************ consensus_5466#0 TCAGCCAGAGGAATATTTGGTCGAGAAAGACGTAAGTGACACAAAGTTGTTTGAAAAGGA 360 consensus_5466#1 TCAGCCAGAGGAATATTTGGTCGAGAAAGACGTAAGTGACACAAAGTTGTTTGAAAAGGA 359 ************************************************************ consensus_5466#0 AGAACTGCCAAAGATGCAGGAACCCGGCGTAGTACAGGATCTGCAGATTGAGTTCGTTCA 420 consensus_5466#1 AGAACTGCCAAAGATACAGGAACCCGGCGTAGTACAGGATCTGCAGATTGAGTTCGTTCA 419 *************** ******************************************** consensus_5466#0 GCCTGATCCGGATCCGATCGGTTTGAATGATGACGATGCTAACGAAAAACGCAACATTGC 480 consensus_5466#1 GCCTGATCCGGATCCGATCGGTTTGAATGATGACGATGCTAACGAAAAACGCAACATTGC 479 ************************************************************ consensus_5466#0 CAGTAGTGAGGACGACGATGATACGCTGCAAGTGAAGGAAAAGGAACCGGCGGAAACGGC 540 consensus_5466#1 CAGTAGTGAGGACGACGATGATACGCTGCAAGTGAAGGAAAAGGAACCGGCGGAAACGGC 539 ************************************************************ consensus_5466#0 GGAAACGGCGGATCAACCCAGTAGCAAGAAGGCTAAGACATCGGTCTCCAATAAACCGAA 600 consensus_5466#1 GGAAACGGCGGATCAACCCAGTAGCAAGAAGGCTAAGACATCGGTCTCCGATAAACCGAA 599 ************************************************* ********** consensus_5466#0 AAAGACGCGTGCAAATCGAAAGGAAAACGACAAGATCATCGACGAGTTTTACACCATGGC 660 consensus_5466#1 AAAGACGCGTGCAAATCGA----------------------------------------- 618 ******************* consensus_5466#0 AGTGTGAGATCTGTTCGGCACCTGCAAATAACTTTGGGACGTTGGTAAACCATTACCGTG 720 consensus_5466#1 ------------------------------------------------------------ consensus_5466#0 CGGAGCACGATATAAAGGGCTACGTGCGGTGCTGCGATAAGCAGTACTTTAATCGGTCCT 780 consensus_5466#1 ------------------------------------------------------------ consensus_5466#0 ACCTGGTAGACCACATTGCATCGCACAAAGGATTAACGCGGTGCGAGATTTGCGACCGTA 840 consensus_5466#1 ------------------------------------------------------------ consensus_5466#0 CTTACAAAACAATGCGCTACCTGAACCAGCACATGAGTGAGAGTCACAGCCAGCGAGATG 900 consensus_5466#1 ------------------------------------------------------------ consensus_5466#0 CAAAACCATTCAAATGTACCCAAT 924 consensus_5466#1 ------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||