These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5470#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 978 fasta sequence [TTGGGCCGATGATCTTGATTTGGACCTCAGCAATGAGCTCTCCAGCAACGGATACATTAGTGATTCGCTGTTGAATTTCCCTGTGTTCAAGCAAGAACTTCCATCTCCTCCTCAGAAGCATTCTCATCATCAGCAACACTCTCAACAACAACAACAACAACAGCAACAACAACATCAACTCCATCAACAACAGCAGCAAAGTTTGCACCAGCAGGCTGCTACTACTGCCGCTGCCGCTGGAATGTAGAAGGCTAAACACAGGCTGTTAGTTATACGCGCGACACTAATCCCAGCGAGAACGGCGAGATTCATTTCTCCTTTCCTTT-CCTGTTTGTTATATCAAACGAAGTTGTACCCGTTGGCTTAGTCCACCAATTTACATACAATAAAACTAGTATCGCAGAACGCTGAACACGCTAACGCTACGAACGAACGAACGGATGCGGGCATAAGAACGGAGAGAACGGATTAACAGCGACAAACGGAAACTAACGCAATCGAACCTTATCGACAATTAGCATTGTACTTTACATTGGTAGTTTAAAACAAACAAAAAATCCCTTACCGATTGATAGCAACAAATAGCAACCATTCAACAGTGTGACGTCAACTGCAGCATATGAACTAAAACAATTAAATATCCTCAATGTAGACAAACTGAAGGTACCCGTGAGCGCACGAACACGAGAGGTGCATACNATAGGAGCATAAAACACGGTACCGTATACCGTTTATTTCTACCCTAATACTACAATTTGTTTGATTACCATTTACTTTTATTTTGTTGTTTACGTTACTTGATAGCAACTGCCGAATGTATGCCCCCATAACAGTATGTGTATGTGGCCCCTGCCCGTCACAACAGCCAATGCTTCTTATCCGGACGCTACCTTACTTAGCTAAAGCAATATTTCAGTTATCGGCTTTTACAACGTTGGTGGTTTTTTCGACTATTGCACAGTGCACAGATGCTTATTG] [+] EMBL BX628797 [TTGGGCCGATGATCTTGATTTGGACCTCAGCAATGAGCTCTCCAGCAACGGATACATTAGTGATTCGCTGTTGAATTTCCCTGTGTTCAAGCAAGAACTTCCATCTCCTCCTCAGAAGCATTCTCATCATCAGCAACACTCTCAACAACAACAACAACAACAGCAACAACAACATCAACTCCATCAACAACAGCAGCAAAGTTTGCACCAGCAGGCTGCTACTACTGCCGCTGCCGCTGGAATGTAGAAGGCTAAACACAGGCTGTTAGTTATACGCGCGACACTAATCCCAGCGAGAACGGCGAGATTCATTTCTCCTTTCCTTT CCTGTTTGTTATATCAAACGAAGTTGTACCCGTTGGCTTAGTCCACCAATTTACATACAATAAAACTAGTATCGCAGAACGCTGAACACGCTAACGCTACGAACGAACGAACGGATGCGGGCATAAGAACGGAGAGAACGGATTAACAGCGACAAACGGAAACTAACGCAATCGAACCTTATCGACAATTAGCATTGTACTTTACATTGGTAGTTTAAAACAAACAAAAAATCCCTTACCGATTGATAGCAACAAATAGCAACCATTCAACAGTGTGACGTCAACTGCAGCATATGAACTAAAACAATTAAATATCCTCAATGTAGACAAACTGAAGGTACCCGTGAGCGCACGAACACGAGAGGTGCATACNATAGGAGCATAAAACACGGTACCGTATACCGTTTA ] [+] EMBL BM606938 [ ccGCGAGGACGGCGAGATTCATTTCTCCTTTCCTTTCCCATTTTGTTATATCAAACGAAGTTGTACCCGTTGGCTTAGTCCACCAATTTACATACAATAAAACTAGTATCGCAGAACGCTGAACACGCTAACGCTACGAACGAACGAACGGATGCGGGCATAAGAACGGAGAGAACGGATTAACAGCGACAAACGGAAACTAACGCAATCGAACCTTATCGACAATTAGCATTGTACTTTACATTGGTAGTTTAAAACAAAC AAAAATCCCTTACCGATTGATAGCAACAAATAGTAACCATTCAACCGTGTGACGTCAACTGCAGCATATGAACTAAAACAATTAAATATCCTCAATGTAGACAAACTGAAGGTACCCGTGAGCACACGAACACGAGAGGTGCATACAATAGGAGCATAAAACACGGTACCGTATACCGTTTATTTCTACCCTAATACTACAATTTGTTTGATTACCATTTACTTTTATTTTGTTGTTTACGTTACTTGATAGCAACTGCCGAATGTATGCCCCCATAACAGTATGTGTATGTGGCCCCTGCCCGTCACAACAGCCAATGCTTCTTATCCGGACGCTACCTTACTTAGCTAAAGCAATATTTCAGTTATCGGCTTTTACAACGTTGGTGGTTTTTTCGACTATTGCACAGTGCACAGATGCTTATTG] consensusID : consensus_5470#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 647 fasta sequence [CCGCGGACGCGTGGGCAGGCTGTTAGTTATACGCGCGACACTAATCCCAGCGAGGACGGCGAGATTCATTTCTCCTTTCCTTTCCCATTTTGTTATATCAAACGAAGTTGTACCCGTTGGCTTAGTCCACCAATTTACATACAATAAAACTAGTATCGCAGAACGCTGAACACGCTAACGCTACGAACGAACGAACGGATGCGGGCATAAGAACGGAGAGAACGGATTAACAGCGACAAACGGAAACTAACGCAATCGAACCTTATCGACAATTAGCATTGTACTTTACATTGGTAGTTTAAAACAAACAAAAATCCCTTACCGATTGATAGCAACAAATAGTAACCATTCAACCGTGTGACGTCAACTGCAGCATATGAACTAAAACAATTAAATATCCTCAATGTAGACAAACTGAAGGTACCCGTGAGCACACGAACACGAGAGGTGCATACAATAGGAGCATAAAACACGGTACCGTATACCGTTTATTTCTACCCTAATACTACAATTTGTTTGATTACCATTTACTTTTATTTTGTTGTTTACGTTACTTGATAGCAACTGCCGAATGTATGCCCCCATAACAGTATGTGTATGTGGCCCCTGCCCGTCACAACAGCCAATGCTTCTTATCCGGACGCTAC] [+] EMBL BM594909 [CCGCGGACGCGTGGGCAGGCTGTTAGTTATACGCGCGACACTAATCCCAGCGAGGACGGCGAGATTCATTTCTCCTTTCCTTTCCCATTTTGTTATATCAAACGAAGTTGTACCCGTTGGCTTAGTCCACCAATTTACATACAATAAAACTAGTATCGCAGAACGCTGAACACGCTAACGCTACGAACGAACGAACGGATGCGGGCATAAGAACGGAGAGAACGGATTAACAGCGACAAACGGAAACTAACGCAATCGAACCTTATCGACAATTAGCATTGTACTTTACATTGGTAGTTTAAAACAAACAAAAATCCCTTACCGATTGATAGCAACAAATAGTAACCATTCAACCGTGTGACGTCAACTGCAGCATATGAACTAAAACAATTAAATATCCTCAATGTAGACAAACTGAAGGTACCCGTGAGCACACGAACACGAGAGGTGCATACAATAGGAGCATAAAACACGGTACCGTATACCGTTTATTTCTACCCTAATACTACAATTTGTTTGATTACCATTTACTTTTATTTTGTTGTTTACGTTACTTGATAGCAACTGCCGAATGTATGCCCCCATAACAGTATGTGTATGTGGCCCCTGCCCGTCACAACAGCCAATGCTTCTTATCCGGACGCTAC] consensusID : consensus_5470#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 549 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGCATAAAACACGGTACCGTATACCGTTTATTTCTACCCTAATACTACAATTTGTTTGATTACCATTTACTTTTACTTTGTTGTTTACGTTACTTGATAGCAACTGCCGAATGTATGTCCCCATAACAGTATGTGTATGTGGCCCCTGCCCGTCACAACAGCCAATGCTTCTTATCCGGACGCTACCTTACTTAGCTAAAGCAATATTTCAGTTATCGGCTTTTACAACGTTGGTGGTTTTTTCGACTAGTGCACAGAAGCTTATTGGAAACGAAATTATTCTTCAAAACACGCAAAAATGACGGAGAAACAAAACTCTAAGCAAACAATTTCAATTCCACCACAAGCGAGAAACTTCTGCAGCATGCAAACAAACAAAAATCAAATTACTTTAACGAAATCCTGTAGCAGTAGAGATTAAAATTCGAATAAAGCATACTGTTATTTAGAGTAAGGAATCTGTAAAGTGATATAAGCGTAGGGAGGAAAAGAAAAGCCACAGCTAAACGTGTTTAACCCTCCC] [+] EMBL BM576475 [CCGCCCACGCGTCCGCCCACGCGTCCGGCATAAAACACGGTACCGTATACCGTTTATTTCTACCCTAATACTACAATTTGTTTGATTACCATTTACTTTTACTTTGTTGTTTACGTTACTTGATAGCAACTGCCGAATGTATGTCCCCATAACAGTATGTGTATGTGGCCCCTGCCCGTCACAACAGCCAATGCTTCTTATCCGGACGCTACCTTACTTAGCTAAAGCAATATTTCAGTTATCGGCTTTTACAACGTTGGTGGTTTTTTCGACTAGTGCACAGAAGCTTATTGGAAACGAAATTATTCTTCAAAACACGCAAAAATGACGGAGAAACAAAACTCTAAGCAAACAATTTCAATTCCACCACAAGCGAGAAACTTCTGCAGCATGCAAACAAACAAAAATCAAATTACTTTAACGAAATCCTGTAGCAGTAGAGATTAAAATTCGAATAAAGCATACTGTTATTTAGAGTAAGGAATCTGTAAAGTGATATAAGCGTAGGGAGGAAAAGAAAAGCCACAGCTAAACGTGTTTAACCCTCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5470#0 TTGGGCCGATGATCTTGATTTGGACCTCAGCAATGAGCTCTCCAGCAACGGATACATTAG 60 consensus_5470#1 ------------------------------------------------------------ consensus_5470#2 ------------------------------------------------------------ consensus_5470#0 TGATTCGCTGTTGAATTTCCCTGTGTTCAAGCAAGAACTTCCATCTCCTCCTCAGAAGCA 120 consensus_5470#1 ------------------------------------------------------------ consensus_5470#2 ------------------------------------------------------------ consensus_5470#0 TTCTCATCATCAGCAACACTCTCAACAACAACAACAACAACAGCAACAACAACATCAACT 180 consensus_5470#1 ------------------------------------------------------------ consensus_5470#2 ------------------------------------------------------------ consensus_5470#0 CCATCAACAACAGCAGCAAAGTTTGCACCAGCAGGCTGCTACTACTGCCGCTGCCGCTGG 240 consensus_5470#1 ------------------------------------------------------------ consensus_5470#2 ------------------------------------------------------------ consensus_5470#0 AATGTAGAAGGCTAAACACAGGCTGTTAGTTATACGCGCGACACTAATCCCAGCGAGAAC 300 consensus_5470#1 -CCGCGGACGCGTGGGC--AGGCTGTTAGTTATACGCGCGACACTAATCCCAGCGAGGAC 57 consensus_5470#2 -------------CCGCCCACGCGTCCGCCCACGCGTCCGGCATAAAACACGGTACCGTA 47 * * ** * ** ** ** ** * * * consensus_5470#0 GGCGAGATTCATTTCTCCTTTCCTTTCCTGTTT-GTTATATCAAACGAAGTTGTACCCGT 359 consensus_5470#1 GGCGAGATTCATTTCTCCTTTCCTTTCCCATTTTGTTATATCAAACGAAGTTGTACCCGT 117 consensus_5470#2 TACCG--TTTATTTCTACCCTAATACTACAATTTGTTTGATTA-------CCATTTACTT 98 * ** ****** * * * ** *** ** * * * * consensus_5470#0 TGGCTTAGTCCACCAATTTACATACAATAAAACTAGTATCGCAGAACGCTGAACACGCTA 419 consensus_5470#1 TGGCTTAGTCCACCAATTTACATACAATAAAACTAGTATCGCAGAACGCTGAACACGCTA 177 consensus_5470#2 TTACTTTGTT-----GTTTACGTTACTTGATAGCA--ACTGCCGAATGTATGTCCCCATA 151 * *** ** ***** * * * * * * ** *** * * * ** consensus_5470#0 ACGCTACGAACGAACGAACGGATGCGGGCATAAGAACGGAGAGAACGGATTAACAGCGAC 479 consensus_5470#1 ACGCTACGAACGAACGAACGGATGCGGGCATAAGAACGGAGAGAACGGATTAACAGCGAC 237 consensus_5470#2 ACAGTATGTGTATGTGGCC---CCTGCCCGTCACAACAGCCAATGCTTCTTATC-----C 203 ** ** * * * * * * * *** * * * *** * * consensus_5470#0 AAACGGAAACTAACGCAATCGAACCTTATCGACAATTAGCATTGTACTTTACATTGGTAG 539 consensus_5470#1 AAACGGAAACTAACGCAATCGAACCTTATCGACAATTAGCATTGTACTTTACATTGGTAG 297 consensus_5470#2 GGACGCTACCTTACTTAGCTAAAGCAATATTTCAGTTATCGGCTTTTACAACGTTGGTGG 263 *** * ** ** * ** * ** *** * * ** ***** * consensus_5470#0 TTTAAAACAAACAAAAAATCCCTTACCGATTGATAGCAACAAATAGCAACCATTCAACAG 599 consensus_5470#1 TTTAAAACAAACAAAAA-TCCCTTACCGATTGATAGCAACAAATAGTAACCATTCAACCG 356 consensus_5470#2 TTTTT-----TCGACTAGTGCACAGAAGCTTATTGGAAACGAA-ATTATTCTTCAAAACA 317 *** * * * * * * ** * * *** ** * * * * ** consensus_5470#0 TGTGACGTCAACTGCAGCATATGAACTAAAACAATTAAATATCCTCAATGTAGACAAACT 659 consensus_5470#1 TGTGACGTCAACTGCAGCATATGAACTAAAACAATTAAATATCCTCAATGTAGACAAACT 416 consensus_5470#2 CGCAAAAATGACGGAGAAACAAAACTCTAAGCA----AACAATTTCAATTCCACCACAAG 373 * * ** * * * * ** ** ** * ***** ** * consensus_5470#0 GAAGGTACCCGTG-AGCGCACGAACACGAGAGGTGCATACNATAGGAGCATAAAACACGG 718 consensus_5470#1 GAAGGTACCCGTG-AGCACACGAACACGAGAGGTGCATACAATAGGAGCATAAAACACGG 475 consensus_5470#2 CGAGAAACTTCTGCAGCATGCAAACAAACAAAAATCAAATTACTTTAACG-AAATCCTGT 432 ** ** ** *** * **** * ** * * * * *** * * consensus_5470#0 TACCGTATACCGTTTATTTCTACCCTAATACTACAATTTGTTTGATTACCATTTACTTTT 778 consensus_5470#1 TACCGTATACCGTTTATTTCTACCCTAATACTACAATTTGTTTGATTACCATTTACTTTT 535 consensus_5470#2 AGCAGTAGAGATTAAAATTCGAATAAAGCA-TACTGTTATTTAGAGTA--AGGAATCTGT 489 * *** * * * *** * * * *** ** ** ** ** * * * * consensus_5470#0 ATTTTGTTGTTTACGTTACTTG-ATAGCAACTGCCGAATGTATGCCCCCATAACAGTATG 837 consensus_5470#1 ATTTTGTTGTTTACGTTACTTG-ATAGCAACTGCCGAATGTATGCCCCCATAACAGTATG 594 consensus_5470#2 AAAGTGATATAAGCGTAGGGAGGAAAAGAAAAGCCACAGCTAAACGTGTTTAACCCTCCC 549 * ** * * *** * * * ** *** * ** * **** * consensus_5470#0 TGTATGTGGCCCCTGCCCGTCACAACAGCCAATGCTTCTTATCCGGACGCTACCTTACTT 897 consensus_5470#1 TGTATGTGGCCCCTGCCCGTCACAACAGCCAATGCTTCTTATCCGGACGCTAC------- 647 consensus_5470#2 ------------------------------------------------------------ consensus_5470#0 AGCTAAAGCAATATTTCAGTTATCGGCTTTTACAACGTTGGTGGTTTTTTCGACTATTGC 957 consensus_5470#1 ------------------------------------------------------------ consensus_5470#2 ------------------------------------------------------------ consensus_5470#0 ACAGTGCACAGATGCTTATTG 978 consensus_5470#1 --------------------- consensus_5470#2 --------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||