cluster # 5472

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Anopheles gambiae
cluster # 5472 cluster # 5472 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5472#0 length = 659 sequences # 3

consensus_5472#1 length = 604 sequences # 1

consensusID : consensus_5472#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 659
fasta sequence

                              [CCGAAATCGGGCACAGTCGCGAACGATCGCTTCACCGGTGCACTACGGCACACTAGAGCTCGATACACTGCACAACGTGTACTGCGGGCAAGAGATCGTGGGTTTTGCGGTTTTGGTAGCTTCGGTGCTTAGTACGAAATATTGAACGGAGCTCATCATGGGTGAGGAAAAAGTAAAAGATGACCCGTCGGCACCATCCGCACCGGGATACAGTGTTGGTGACTTTAATTCTACAACCAAACTAGCCGAATCGCAAATCATCTCCGATGCCGAGTACAACCCGTTCGAGCACCGACAGATCGACAAGCCGAACAGTACGACCGGTTCGCTGATCCACCTGCTGAAGAGTTCGCTCGGCACGGGCATTCTGGCCATGCCGGTGGCGTTCAAAAATGCCGGCCTACTGTTCGGTGCGATCGGTACCGTCATCATCGGGCTGATCTGTACTCACTGCGTGCATATACTGGTAAAAACATCCCACATGGTTTGCCAGCGGACAAGGATACCGGTGCTGGGATTTGCCGAAACAGCTGAGCGTGTCTTCCAGTATGGACCAGCAAAACTTCGACCTCTGGCCGGCTTTTCAAAAGCCTTCGTTGACTATGCCCTGATGGCGACGTACTTCAGTGCCGGGTGCGTGTACATCGTGTTCATCGCGA]

[+] EMBL BM576755             [CCGAAATCGGGCACAGTCGCGAACGATCGCTTCACCGGTGCACTACGGCACACTAGAGCTCGATACACTGCACAACGTGTACTGCGGGCAAGAGATCGTGGGTTTTGCGGTTTTGGTAGCTTCGGTGCTTAGTACGAAATATTGAACGGAGCTCATCATGGGTGAGGAAAAAGTAAAAGATGACCCGTCGGCACCATCCGCACCGGGATACAGTGTTGGTGACTTTAATTCTACAACCAAACTAGCCGAATCGCAAATCATCTCCGATGCCGAGTACAACCCGTTCGAGCACCGACAGATCGACAAGCCGAACAGTACGACCGGTTCGCTGATCCACCTGCTGAAGAGTTCGCTCGGCACGGGCATTCTGGCCATGCCGGTGGCGTTCAAAAATGCCGGCCTACTGTTCGGTGCGATCGGTACCGTCATCATCGGGCTGATCTGTACTCACTGCGTGCATATACTGGTAAAAACATCCCACATGGTTTGCCAGCGGACAAGGATACCGGTGCTGGGATTTGCCGAAACAGCTGAGCGTGTCTTCCAGTATGGACCAGCAAAACTTCGACCTCTGGCCGGCTTTTCAAAAGCCTTCGTTGACTATGCCCTGATGGCGACGTACTTCAGTGCCGGGTGCGTGTACATCGTGTTCATCGCGA]
[+] EMBL BM583523             [                    ccgCGATCGCTTCACCGGTGCACTACGGCACACTAGAGCTCGATACACTGCACAACGTGTACTGCGGGCAAGAGATCGTGGGTTTTGCGGTTTTGGTAGCTTCGGTGCTTAGTACGAAATATTGAACGGAGCTCATCATGGGTGAGGAAAAAGTAAAAGATGACCCGTCGGCACCATCCGCACCGGGATACAGTGTTGGTGACTTTAATTCTACAACCAAACTAGCCGAATCGCAAATCATCTCCGATGCCGAGTACAACCCGTTCGAGCACCGACAGATCGACAAACCGAACAGTACGACCGGTTCGCTGATCCACCTGCTGAAGAGTTCGCTCGGCACGGGCATTCTGGCCATGCCGGTGGCGTTCAGAAATGCCGGCCTACTGTTCGGTGCGATCGGTACCGTCATCATCGGGCTGATCTGTACTCACTGCGTGC  ATACTGGTAAAAACATCCCACATGGTTTGCCAGCGGACAAGGA                                                                                                                                                            ]
[+] EMBL BM638247             [                                                                       ccgACGTGTACTGCGGGCAAGAGATCGTGGGTTTTGCGGTTTTGGTAGCTTCGGTGCTTAGTACGAAATATTGAACGGAGCTCATCATGGGTGAGGAAAAAGTAAAAGATGACCCGTCGGCACCATCCGCACCGGGATACAGTGTTGGTGACTTTAATTCTACAACCAAACTAGCCGAATCGCAAATCATCTCCGATGCCGAGTACAACCCGTTCGAGCACCGACAGATCGACAAGCCGAACAGTACGACCGGTTCGCTGATCCACCTGCTGAAGAGTTCGCTCGGCACGGGCATTCTGGCCATGCCGGTGGCGTTCAAAAATGCCGGCCTACTGTTCGGTGCGATCGGTACCGTCATCATCGGGCTGATCTGTACTCACTGCGTGCATATACTGGTAAAAACATCCCACATGGTTTGCCAGCGGACAAGGATACCGGTGCTGGGATTTGCCGAAACAGCTGAGCGTGTCTTCCAGTATGGACCAGCAAAACTTCGACCTCTGGCCGGCTTTTCAAAAGCCTTCGTTGACTATGCCCTGATGGCGACGTACTTCAGTGCCGGGTGCGTGTACATCGTGTTCATCG   ]




>consensus_5472#0
CCGAAATCGGGCACAGTCGCGAACGATCGCTTCACCGGTGCACTACGGCACACTAGAGCT
CGATACACTGCACAACGTGTACTGCGGGCAAGAGATCGTGGGTTTTGCGGTTTTGGTAGC
TTCGGTGCTTAGTACGAAATATTGAACGGAGCTCATCATGGGTGAGGAAAAAGTAAAAGA
TGACCCGTCGGCACCATCCGCACCGGGATACAGTGTTGGTGACTTTAATTCTACAACCAA
ACTAGCCGAATCGCAAATCATCTCCGATGCCGAGTACAACCCGTTCGAGCACCGACAGAT
CGACAAGCCGAACAGTACGACCGGTTCGCTGATCCACCTGCTGAAGAGTTCGCTCGGCAC
GGGCATTCTGGCCATGCCGGTGGCGTTCAAAAATGCCGGCCTACTGTTCGGTGCGATCGG
TACCGTCATCATCGGGCTGATCTGTACTCACTGCGTGCATATACTGGTAAAAACATCCCA
CATGGTTTGCCAGCGGACAAGGATACCGGTGCTGGGATTTGCCGAAACAGCTGAGCGTGT
CTTCCAGTATGGACCAGCAAAACTTCGACCTCTGGCCGGCTTTTCAAAAGCCTTCGTTGA
CTATGCCCTGATGGCGACGTACTTCAGTGCCGGGTGCGTGTACATCGTGTTCATCGCGA

consensusID : consensus_5472#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 604
fasta sequence

                              [CCGGTCGCGAACGATCGCTTCACCGGTGCACTACGGCACACTAGAGCTCGATACACTGCACAACGTGTACTGCGGGCAAGAGATCGTGGGTTTTGCGGTTTTGGTAGCTTCGGTGCTTAGGTTAGTAAGCTGCAGGAGTTGGCAGTTACTAGGCAACAAACATTCTAGTGATCTGTGATCGTGATCGTGTGCGTTTGGCATATTTGCAGTTTGAAGTAGTTTAGTGTTTCTTTTCTAGTACAGTACAAAATTAACGTATTATTGTGTGTGTGTATATTTTTGTTGACAGTACGAAATATTGAACGGAGCTCATCATGGGTGAGGAAAAAGTAAAAGATGACCCGTCGGCACCATCCGCACCGGGATACAGTGTTGGTGACTTTAATTCTACAACCAAACTAGCCGAATCGCAAATCATCTCCGATGCCGAGTACAACCCGTTCGAGCACCGACAGATCGACAAGCCGAACAGTACGACCGGTTCGCTGATCCACCTGCTGAAGAGTTCGCTCGGCACGGGCATTCTGGCCATGCCGGTGGCGTTCAAAAATGCCGGCCTACTGTTCGGTGCGATCGGTACCGTCATCATCGGGCTGATCTGTAC]

[+] EMBL BM648703             [CCGGTCGCGAACGATCGCTTCACCGGTGCACTACGGCACACTAGAGCTCGATACACTGCACAACGTGTACTGCGGGCAAGAGATCGTGGGTTTTGCGGTTTTGGTAGCTTCGGTGCTTAGGTTAGTAAGCTGCAGGAGTTGGCAGTTACTAGGCAACAAACATTCTAGTGATCTGTGATCGTGATCGTGTGCGTTTGGCATATTTGCAGTTTGAAGTAGTTTAGTGTTTCTTTTCTAGTACAGTACAAAATTAACGTATTATTGTGTGTGTGTATATTTTTGTTGACAGTACGAAATATTGAACGGAGCTCATCATGGGTGAGGAAAAAGTAAAAGATGACCCGTCGGCACCATCCGCACCGGGATACAGTGTTGGTGACTTTAATTCTACAACCAAACTAGCCGAATCGCAAATCATCTCCGATGCCGAGTACAACCCGTTCGAGCACCGACAGATCGACAAGCCGAACAGTACGACCGGTTCGCTGATCCACCTGCTGAAGAGTTCGCTCGGCACGGGCATTCTGGCCATGCCGGTGGCGTTCAAAAATGCCGGCCTACTGTTCGGTGCGATCGGTACCGTCATCATCGGGCTGATCTGTAC]




>consensus_5472#1
CCGGTCGCGAACGATCGCTTCACCGGTGCACTACGGCACACTAGAGCTCGATACACTGCA
CAACGTGTACTGCGGGCAAGAGATCGTGGGTTTTGCGGTTTTGGTAGCTTCGGTGCTTAG
GTTAGTAAGCTGCAGGAGTTGGCAGTTACTAGGCAACAAACATTCTAGTGATCTGTGATC
GTGATCGTGTGCGTTTGGCATATTTGCAGTTTGAAGTAGTTTAGTGTTTCTTTTCTAGTA
CAGTACAAAATTAACGTATTATTGTGTGTGTGTATATTTTTGTTGACAGTACGAAATATT
GAACGGAGCTCATCATGGGTGAGGAAAAAGTAAAAGATGACCCGTCGGCACCATCCGCAC
CGGGATACAGTGTTGGTGACTTTAATTCTACAACCAAACTAGCCGAATCGCAAATCATCT
CCGATGCCGAGTACAACCCGTTCGAGCACCGACAGATCGACAAGCCGAACAGTACGACCG
GTTCGCTGATCCACCTGCTGAAGAGTTCGCTCGGCACGGGCATTCTGGCCATGCCGGTGG
CGTTCAAAAATGCCGGCCTACTGTTCGGTGCGATCGGTACCGTCATCATCGGGCTGATCT
GTAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5472#0      ------------------------------------------------------------
consensus_5472#1      CCGGTCGCGAACGATCGCTTCACCGGTGCACTACGGCACACTAGAGCTCGATACACTGCA 60
                                                                                  

consensus_5472#0      ------------------------------------------------------------
consensus_5472#1      CAACGTGTACTGCGGGCAAGAGATCGTGGGTTTTGCGGTTTTGGTAGCTTCGGTGCTTAG 120
                                                                                  

consensus_5472#0      -----------------------------CCGAAATCGGGCACAGTCGCGAACGATCGCT 31
consensus_5472#1      GTTAGTAAGCTGCAGGAGTTGGCAGTTACTAGGCAACAAACATTCTAGTGATCTGTGATC 180
                                                     *  * *   **   * * ** *  *    

consensus_5472#0      TCACCGGTGCAC-TACGGCACACTAG-AGCTCGA-----TACACTGCACAACGTGTACTG 84
consensus_5472#1      GTGATCGTGTGCGTTTGGCATATTTGCAGTTTGAAGTAGTTTAGTGTTTCTTTTCTAGTA 240
                            ***  * *  **** * * * ** * **     *  * **       * ** * 

consensus_5472#0      CGGGCAAGAGATCGTGGGTT-TTGCGGTTTTGGTAGCTTCGGTGCTTAGTACGAAATATT 143
consensus_5472#1      CAGTACAAAATTAACGTATTATTGTGTGTGTGTATATTTTTGTTGACAGTACGAAATATT 300
                      * *   * *  *   *  ** *** *  * **     **  **    *************

consensus_5472#0      GAACGGAGCTCATCATGGGTGAGGAAAAAGTAAAAGATGACCCGTCGGCACCATCCGCAC 203
consensus_5472#1      GAACGGAGCTCATCATGGGTGAGGAAAAAGTAAAAGATGACCCGTCGGCACCATCCGCAC 360
                      ************************************************************

consensus_5472#0      CGGGATACAGTGTTGGTGACTTTAATTCTACAACCAAACTAGCCGAATCGCAAATCATCT 263
consensus_5472#1      CGGGATACAGTGTTGGTGACTTTAATTCTACAACCAAACTAGCCGAATCGCAAATCATCT 420
                      ************************************************************

consensus_5472#0      CCGATGCCGAGTACAACCCGTTCGAGCACCGACAGATCGACAAGCCGAACAGTACGACCG 323
consensus_5472#1      CCGATGCCGAGTACAACCCGTTCGAGCACCGACAGATCGACAAGCCGAACAGTACGACCG 480
                      ************************************************************

consensus_5472#0      GTTCGCTGATCCACCTGCTGAAGAGTTCGCTCGGCACGGGCATTCTGGCCATGCCGGTGG 383
consensus_5472#1      GTTCGCTGATCCACCTGCTGAAGAGTTCGCTCGGCACGGGCATTCTGGCCATGCCGGTGG 540
                      ************************************************************

consensus_5472#0      CGTTCAAAAATGCCGGCCTACTGTTCGGTGCGATCGGTACCGTCATCATCGGGCTGATCT 443
consensus_5472#1      CGTTCAAAAATGCCGGCCTACTGTTCGGTGCGATCGGTACCGTCATCATCGGGCTGATCT 600
                      ************************************************************

consensus_5472#0      GTACTCACTGCGTGCATATACTGGTAAAAACATCCCACATGGTTTGCCAGCGGACAAGGA 503
consensus_5472#1      GTAC-------------------------------------------------------- 604
                      ****                                                        

consensus_5472#0      TACCGGTGCTGGGATTTGCCGAAACAGCTGAGCGTGTCTTCCAGTATGGACCAGCAAAAC 563
consensus_5472#1      ------------------------------------------------------------
                                                                                  

consensus_5472#0      TTCGACCTCTGGCCGGCTTTTCAAAAGCCTTCGTTGACTATGCCCTGATGGCGACGTACT 623
consensus_5472#1      ------------------------------------------------------------
                                                                                  

consensus_5472#0      TCAGTGCCGGGTGCGTGTACATCGTGTTCATCGCGA 659
consensus_5472#1      ------------------------------------