These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5476#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1409 fasta sequence [TTTAAAGCGATTTAATAAATGTTTTATTAGTTTCTTTGTTCGTTTTTTTAAATTGTTCGTAAATTGCTACACGTAGGTTCAGGTCCGATTGGTAAAAATATTTGTTCGGTAAGCTTTTTTGTTTTAATTAAAATTACTTAACAAAACGTTCGACGTCCCAAATCGGGTCATATGTGCAAAAGAGAATGCACAACTCGATTTTCTAGCAGGCTGTTTTGTGTCACTTCTACTTAAAAGTGCATTAAAGTTTAAGCGTAATGGGTGGTGGTGGTTTGTTGGTTGGTTGGTGTTGTTAATTGAGTAAAAGAAAGCGGACAAGCGCTCTCAA-GGCAATGCACGCGGCGCGAAGAGAGTATTGGGATGCGTGGTCGTGCGCCGATGGTAGGAGCGTTAGTCCTTCTTTGGTTTTTTGTAGTACCACGCGGCCAGCAACACCGAGCTGCTGAGCACGGTCGAGATGCCAAAGTTGGCGAGCAGCATTTTATCGCCCGAATCCAGCATAATCGTGTAGATGCGAGTAGAGTTCGTGAACGCCGATATGCCCCACGTGATCAGGCTGACCGACTGGGAGTCCTTCGAGCGGAGGATGGCAATCAGCTGCATTACCTTGCTCGTCGCCCCGACCGGTGTGGTAAATGGCACTAGCATCATGAGCAGCGAGGAAGGTATGATGGCGGTA-CGAA-CCAACAAACACCGCCACATAGACTGCAGCCCACTGGTAGGCGCGCTTGCCGAGCAGCGACTCATACTGCAGCACGTAGTAGATGAGCACGTACTCCTGCACCAGCAGTATCGGGTACTCCAGGTAGGAAAGGAAGGCGTACCCGTTCGTGTAGTTGTACAGCATCGTGACGGTGTAGCTGCACAGCTCCATTAGCAGCCCATTAACGCTCAGCCCCTTGGCCGATTGCAGCTGGCGGACGGTTTGTATCTGCGGCACCTTCGACACCAGGCAGGACGCGATGGTGACGATCGACAGCACGTCCGCTATCACATACAGGATGCCACTCTCGTCCAGCAGGCCCATTTTGGTCGTCAATTATGTCGATCGGTTCAAAGACGCTCAGTAAGGTAGGCTGACACGCTGCTAATGCGCCTCACACCGATGCCATCGTTTGCGCTACCGAGCGAGGAGGTTCGAAAATTCAGCTATTATTATGGGGTGTAGTAGCACACCTTGATGATTGGTACTAATTTTGTCCGGGGCGATGAATTTAAATTTCCCGGTCGGACGCGGAAAGCGCACCGGAACACTGCCTGCCGCAACACAACTGCTGCTTTGCGCCACCGTTCGGGCGTATACGTATACGCACGACGCGTTCGCGGGTTGACACGCGTAATTATTGACTGGTCGACATTTTTAGCGATAAGCCAAACGAGTGACGACGCTAACTGAGAGAAGAAGAGGA] [+] EMBL CNS096DC [TTTAAAGCGATTTAATAAATGTTTTATTAGTTTCTTTGTTCGTTTTTTTAAATTGTTCGTAAATTGCTACACGTAGGTTCAGGTCCGATTGGTAAAAATATTTGTTCGGTAAGCTTTTTTGTTTTAATTAAAATTACTTAACAAAACGTTCGACGTCCCAAATCGGGTCATATGTGCAAAAGAGAATGCACAACTCGATTTTCTAGCAGGCTGTTTTGTGTCACTTCTACTTAAAAGTGCATTAAAGTTTAAGCGTAATGGGTGGTGGTGGTTTGTTGGTTGGTTGGTGTTGTTAATTGAGTAAAAGAAAGCGGACAAGCGCTCTCAA GGCAATGCACGCGGCGCGAAGAGAGTATTGGGATGCGTGGTCGTGCGCCGATGGTAGGAGCGTTAGTCCTTCTTTGGTTTTTTGTAGTACCACGCGGCCAGCAACACCGAGCTGCTGAGCACGGTCGAGATGCCAAAGTTGGCGAGCAGCATTTTATCGCCCGAATCCAGCATAATCGTGTAGATGCGAGTAGAGTTCGTGAACGCCGATATGCCCCACGTGATCAGGCTGACCGACTGGGAGTCCTTCGAGCGGAGGATGGCAATCAGCTGCATTACCTTGCTCGTCGCCCCGACCGGTGTGGTAAATGGCACTAGCATCATGAGCAGCGAGGAAGGTATGATGGCGGTA CGAA CCAACAAACACCGCCACATAGACTGCAGCCCACTGGTAGGCGCGCTTGCCGAGCAGCGACTCATACTGCAGCACGTAGTAGATGAGCACGTACTCCTGCACCAGCAGTATCGGGTACTCCAGGTAGGAAAGGAAGGCGTACCCGTTCGTGTAGTTGTACAGCATCGTGACGGTGTAGCTGCACAGCTCCATTAGCAGCCCATTAACGCTCAGCCCCTTGGCCGATTGCAGCTGGCGGACGGTTTGTATCTGCGGCACCTTCGACACCAGGCAGGACGCGATGGTGACGATCGACAGCACGTCCGCTATCACATAC ] [-] EMBL CNS096DB [ GAAAGCGGACAAGCGCTCTCAAGGGCAATGCACGCGGCGCGAAGAGAGTATTGGGATGCGTGGTCGTGCGCCGATGGTAGGAGCGTTAGTCCTTCTTTGGTTTTTTGTAGTACCACGCGGCCAGCAACACCGAGCTGCTGAGCACGGTCGAGATGCCAAAGTTGGCGAGCAGCATTTTATCGCCCGAATCCAGCATAATCGTGTAGATGCGAGTTGAGTTCGTGAACGCCGATATGCCCCACGTGATCAGGCTGACCGACTGGGAGTCCTTCGAGCGGAGGATGGCAATCAGCTGCATTACCTTGCTCGTCGCCCCGACCGGTGTGGTAAATGGCACTAGCATCATGAGCAGCGAGGAAGGTATGATGGCGGTAGCGAAGCCAACAAACACCGCCACATAGACTGCAGCCCACTGGTAGGCGCGCTTGCCGAGCAGCGACTCATACTGCAGCACGTAGTAGATGAGCACGTACTCCTGCACCAGCAGTATCGGGTACTCCAGGTAGGAAAGGAAGGCGTACCCGTTCGTGTAGTTGTACAGCATCGTGACGGTGTAGCTGCACAGCTCCATTAGCAGCCCATTAACGCTCAGCCCCTTGGCCGATTGCAGCTGGCGGACGGTTTGTATCTGCGGCACCTTCGACACCAGGCAGGACGCGATGGTGACGATCGACAGCACGTCCGCTATCACATACAGGATGCCACTCTCGTCCAGCAGGCCCATTTTGGTCGTCAATTATGTCGATCGGTTCAAAGACGCTCAGTAAGGTAGGCTGACACGCTGCTAATGCGCCTCACACCGATGCCATCGTTTGCGCTACCGAGCGAGGAGGTTCGAAAATTCAGCTATTATTATGGGGTGTAGTAGCACACCTTGATGATTGGTACTAATTTTGTCCGGGGCGATGAATTTAAATTTCCCGGTCGGACGCGGAAAGCGCACCGGAACACTGCCTGCCGCAACACAACTGCT ] [-] EMBL BM619940 [ GCGATGATTTTAAATCTCCCGGTCGGACGCGGAAAGCGCACCGGAACACTGCCTGCCGCCACACAACTGCTGCTTTGCGCCACCGTTCGGGCGTATACGTATACGCACGACGCGTTCGCGGGTTGACACGCGTAATTATTGACTGGTCGACATTTTTAGCGATAAGCCAAACGAGTGACGACGCTAACTGAGAGAAGAAGAGGA] consensusID : consensus_5476#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 730 fasta sequence [CCTTCGAGCGGGAGGATGGCGATCAGCTGCATTACCTTGCTCGTCGCCCCAACCCGGTGTGGTAAATGGCACCAGCATCATGAGCAGCGAGGAAGGTATGATGGTGGTAGCGAAGCCAACAAACACCGCCACATAGACTGCAGCCCACTGGTAGGCGCGCTTGCCGAGCAGCGACTCATACTGCAGCACGTAGTAGATGAGCACGTACTCCTGCACCAGCAGTATCGGGTACTCCAGGTAGGAAAGGAAGGCGTACCCGTTCGTGTAGTTGTACAGCATCGTGACGGTGTAGCTGCACAGCTCCATTAGCAGCCCATTAACGCTCAGCCCCTTGGCGGATTGCAGCTGGCGGACGGTTTGTATCTGCGGCACCTTCGACACCAGGCAGGACGCGATGGTGACGATCGACAGCACGTCCGCTATCACGTACAGGATGCCACTCTCGTCCAGCAGGCCCATTTCGGTCGTCAATTATGTCGATCGGTTCAAAGACGCTCAATCAGGTAGGCTGACACGCTGCTAATGCGCCTGCAGATGATGATGATTTGCACCGATGAAGTATCGTCGCGTAACTGGCTGTTTGCACACCTTCCTTTACCTCACACCGATGCCATCGTTTACGCTACCGAGCGAGGAGGTTCGAAAATTCAGCTATTATTATGGGGTGTAGTAGCACACCTTGATGATTGGTACTAATTTTGTCCGGGGCGATGATTTTAAATTTCCCCGG] [-] EMBL BM576880 [CCTTCGAGCGGGAGGATGGCGATCAGCTGCATTACCTTGCTCGTCGCCCCAACCCGGTGTGGTAAATGGCACCAGCATCATGAGCAGCGAGGAAGGTATGATGGTGGTAGCGAAGCCAACAAACACCGCCACATAGACTGCAGCCCACTGGTAGGCGCGCTTGCCGAGCAGCGACTCATACTGCAGCACGTAGTAGATGAGCACGTACTCCTGCACCAGCAGTATCGGGTACTCCAGGTAGGAAAGGAAGGCGTACCCGTTCGTGTAGTTGTACAGCATCGTGACGGTGTAGCTGCACAGCTCCATTAGCAGCCCATTAACGCTCAGCCCCTTGGCGGATTGCAGCTGGCGGACGGTTTGTATCTGCGGCACCTTCGACACCAGGCAGGACGCGATGGTGACGATCGACAGCACGTCCGCTATCACGTACAGGATGCCACTCTCGTCCAGCAGGCCCATTTCGGTCGTCAATTATGTCGATCGGTTCAAAGACGCTCAATCAGGTAGGCTGACACGCTGCTAATGCGCCTGCAGATGATGATGATTTGCACCGATGAAGTATCGTCGCGTAACTGGCTGTTTGCACACCTTCCTTTACCTCACACCGATGCCATCGTTTACGCTACCGAGCGAGGAGGTTCGAAAATTCAGCTATTATTATGGGGTGTAGTAGCACACCTTGATGATTGGTACTAATTTTGTCCGGGGCGATGATTTTAAATTTCCCCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5476#0 TTTAAAGCGATTTAATAAATGTTTTATTAGTTTCTTTGTTCGTTTTTTTAAATTGTTCGT 60 consensus_5476#1 ------------------------------------------------------------ consensus_5476#0 AAATTGCTACACGTAGGTTCAGGTCCGATTGGTAAAAATATTTGTTCGGTAAGCTTTTTT 120 consensus_5476#1 ------------------------------------------------------------ consensus_5476#0 GTTTTAATTAAAATTACTTAACAAAACGTTCGACGTCCCAAATCGGGTCATATGTGCAAA 180 consensus_5476#1 ------------------------------------------------------------ consensus_5476#0 AGAGAATGCACAACTCGATTTTCTAGCAGGCTGTTTTGTGTCACTTCTACTTAAAAGTGC 240 consensus_5476#1 ------------------------------------------------------------ consensus_5476#0 ATTAAAGTTTAAGCGTAATGGGTGGTGGTGGTTTGTTGGTTGGTTGGTGTTGTTAATTGA 300 consensus_5476#1 ------------------------------------------------------------ consensus_5476#0 GTAAAAGAAAGCGGACAAGCGCTCTCAAGGCAATGCACGCGGCGCGAAGAGAGTATTGGG 360 consensus_5476#1 ------------------------------------------------------------ consensus_5476#0 ATGCGTGGTCGTGCGCCGATGGTAGGAGCGTTAGTCCTTCTTTGGTTTTTTGTAGTACCA 420 consensus_5476#1 ------------------------------------------------------------ consensus_5476#0 CGCGGCCAGCAACACCGAGCTGCTGAGCACGGTCGAGATGCCAAAGTTGGCGAGCAGCAT 480 consensus_5476#1 ------------------------------------------------------------ consensus_5476#0 TTTATCGCCCGAATCCAGCATAATCGTGTAGATGCGAGTAGAGTTCGTGAACGCCGATAT 540 consensus_5476#1 ------------------------------------------------------------ consensus_5476#0 GCCCCACGTGATCAGGCTGACCGACTGGGAGTCCTTCGAGCGG-AGGATGGCAATCAGCT 599 consensus_5476#1 --------------------------------CCTTCGAGCGGGAGGATGGCGATCAGCT 28 *********** ******** ******* consensus_5476#0 GCATTACCTTGCTCGTCGCCCCGACC-GGTGTGGTAAATGGCACTAGCATCATGAGCAGC 658 consensus_5476#1 GCATTACCTTGCTCGTCGCCCCAACCCGGTGTGGTAAATGGCACCAGCATCATGAGCAGC 88 ********************** *** ***************** *************** consensus_5476#0 GAGGAAGGTATGATGGCGGTA-CGAA-CCAACAAACACCGCCACATAGACTGCAGCCCAC 716 consensus_5476#1 GAGGAAGGTATGATGGTGGTAGCGAAGCCAACAAACACCGCCACATAGACTGCAGCCCAC 148 **************** **** **** ********************************* consensus_5476#0 TGGTAGGCGCGCTTGCCGAGCAGCGACTCATACTGCAGCACGTAGTAGATGAGCACGTAC 776 consensus_5476#1 TGGTAGGCGCGCTTGCCGAGCAGCGACTCATACTGCAGCACGTAGTAGATGAGCACGTAC 208 ************************************************************ consensus_5476#0 TCCTGCACCAGCAGTATCGGGTACTCCAGGTAGGAAAGGAAGGCGTACCCGTTCGTGTAG 836 consensus_5476#1 TCCTGCACCAGCAGTATCGGGTACTCCAGGTAGGAAAGGAAGGCGTACCCGTTCGTGTAG 268 ************************************************************ consensus_5476#0 TTGTACAGCATCGTGACGGTGTAGCTGCACAGCTCCATTAGCAGCCCATTAACGCTCAGC 896 consensus_5476#1 TTGTACAGCATCGTGACGGTGTAGCTGCACAGCTCCATTAGCAGCCCATTAACGCTCAGC 328 ************************************************************ consensus_5476#0 CCCTTGGCCGATTGCAGCTGGCGGACGGTTTGTATCTGCGGCACCTTCGACACCAGGCAG 956 consensus_5476#1 CCCTTGGCGGATTGCAGCTGGCGGACGGTTTGTATCTGCGGCACCTTCGACACCAGGCAG 388 ******** *************************************************** consensus_5476#0 GACGCGATGGTGACGATCGACAGCACGTCCGCTATCACATACAGGATGCCACTCTCGTCC 1016 consensus_5476#1 GACGCGATGGTGACGATCGACAGCACGTCCGCTATCACGTACAGGATGCCACTCTCGTCC 448 ************************************** ********************* consensus_5476#0 AGCAGGCCCATTTTGGTCGTCAATTATGTCGATCGGTTCAAAGACGCTCAGTAAGGTAGG 1076 consensus_5476#1 AGCAGGCCCATTTCGGTCGTCAATTATGTCGATCGGTTCAAAGACGCTCAATCAGGTAGG 508 ************* ************************************ * ******* consensus_5476#0 CTGACACGCTGCTAATGCGCCT-------------------------------------- 1098 consensus_5476#1 CTGACACGCTGCTAATGCGCCTGCAGATGATGATGATTTGCACCGATGAAGTATCGTCGC 568 ********************** consensus_5476#0 --------------------------------CACACCGATGCCATCGTTTGCGCTACCG 1126 consensus_5476#1 GTAACTGGCTGTTTGCACACCTTCCTTTACCTCACACCGATGCCATCGTTTACGCTACCG 628 ******************* ******** consensus_5476#0 AGCGAGGAGGTTCGAAAATTCAGCTATTATTATGGGGTGTAGTAGCACACCTTGATGATT 1186 consensus_5476#1 AGCGAGGAGGTTCGAAAATTCAGCTATTATTATGGGGTGTAGTAGCACACCTTGATGATT 688 ************************************************************ consensus_5476#0 GGTACTAATTTTGTCCGGGGCGATGAATTTAAATTTCCCGGTCGGACGCGGAAAGCGCAC 1246 consensus_5476#1 GGTACTAATTTTGTCCGGGGCGATGATTTTAAATTTCCCCGG------------------ 730 ************************** ************ * consensus_5476#0 CGGAACACTGCCTGCCGCAACACAACTGCTGCTTTGCGCCACCGTTCGGGCGTATACGTA 1306 consensus_5476#1 ------------------------------------------------------------ consensus_5476#0 TACGCACGACGCGTTCGCGGGTTGACACGCGTAATTATTGACTGGTCGACATTTTTAGCG 1366 consensus_5476#1 ------------------------------------------------------------ consensus_5476#0 ATAAGCCAAACGAGTGACGACGCTAACTGAGAGAAGAAGAGGA 1409 consensus_5476#1 ------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||