cluster # 5479

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Anopheles gambiae
cluster # 5479 cluster # 5479 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5479#0 length = 968 sequences # 3

consensus_5479#1 length = 660 sequences # 1

consensusID : consensus_5479#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 968
fasta sequence

                              [CCGCGGACGCGTGGGAACGGTGCCAGCTGCGTTAAAAAAAAAGCAATAGGGCAACGCTTTTGGGTAGCGGCTGTGTGCTGCTTAGGAACGTCGTAGGCTACTCTGTCGATGAGTACACACCGTGGCTGTGGATTGCTGTCAGTGAGGTTTAGTGCATCATGAAGAGCTTGACTGCTGCAGCTACGTTGCTTAGCAGCGCTTTGGTGCTGCTGGTGCTGTGTCAAGAAACGGACGCTCTTTCCGTACGGCCACGCCGTGACCTGGTGGAGACGGGCAAGGCAGTGATTCTGCAGGGTGTCTCCAAGCTGAAGGACGCGCTCGACCATGGTGCGAACGTGAAATCGGAAGGGAAGCGCTCTATCGATATATTTGGCTTCAAGTTCGGCGGTGGGTCCAGCGTGAACGCCGGCTTCGGTGACGCGGCCAACGAGGACGCGTCCGCGAACGATGATGATCTGGTGCGACGTCGCCGGGCACTGGATGTGCTGGGGGCAACGTACGCGTACGTAAGCCTGCTACCCCAGTCACCGCACGGCACGAACGTGAACATCGTGAAGGTGAGCTCGGTCTCGAACGTGAACAACTTCGGGGAGCTGCCGGCAGCCGAAACGGCCACGACTGTGGCCGCACCCGTGGCCGAGCGACGGCGCAAGCGTTCCCCGGATATGGTGCAGTTGGCTGCTTTCGAAAAGAAATCGCTCTCGGTCGACAGTGAGCTCAGTCCGGACAAGAAGCTGACAACCCACGAGCGGTTGGAATCGGTGCGTGGAGGAAGTCGTACACTGTTGAGGGAGGATGTGGCACGCAACAAGCGCTCGCCTCAAACGGATGGGCAGGAAGAGGGACAAGAT-GGGGGACCACCGAAGGGCCCACCACCACGGGGCGGACCCAAGGGTCCAAGGGGTCGCGGACCACCACCTGGATGTCCACCGCCTGGCGGAGANGAAGAAACAACCGCGACCACGGCT]

[+] EMBL BM618955             [CCGCGGACGCGTGGGAACGGTGCCAGCTGCGTTAAAAAAAAAGCAATAGGGCAACGCTTTTGGGTAGCGGCTGTGTGCTGCTTAGGAACGTCGTAGGCTACTCTGTCGATGAGTACACACCGTGGCTGTGGATTGCTGTCAGTGAGGTTTAGTGCATCATGAAGAGCTTGACTGCTGCAGCTACGTTGCTTAGCAGCGCTTTGGTGCTGCTGGTGCTGTGTCAAGAAACGGACGCTCTTTCCGTACGGCCACGCCGTGACCTTATGGAGACGGGCAAGGCAGTGATTCTGCAGGGTGTCTCCAAGCTGAAAGACGCGCTCGACCATGGTGTGAACGTGAAATCGGAAGGAAAGCGCTCTATCGATATATTTGGCTTCAAGTTCGGCGGTGGGTCCAGCGTGAACGCCGGCTTCGGTGACGCGGCCAATGAGGACGCGTCCGCGAACGAGGACGATCTGGTGCGACGTCGCCGGGCACTGGATGTGCTGGGGGCAACGTACGCATACGTAAGCCTGCTACCCCAGTCACCGCACGGCACGAACGTGAACATCGTGAAGGTGAGCTCGGTCTCGAACGTGAACAACTTCGGGGAGCTGCCGGCAGCCGAAACGGCCACGACTGTGGCCGCACCCGTGGCCGAGCGACGGCGCAAGCGTTCCCCGGATATGGTGCAGTTGGCTGCT                                                                                                                                                                                                                                                                                              ]
[+] EMBL BX621311             [                                                                                                                                                                            TGCTGTAGCTACGTTGCTTAGCAGCGCTTTGGTGCTGCTGGTGCTGTGTCAAGAAACGGACGCTCTTTCCGTACGGCCACGCCGTGACCTGGTGGAGACGGGCAAGGCAGTGATTCTGCAGGGTGTCTCCAAGCTGAAGGACGCGCTCGACCATGGTGCGAACGTGAAATCGGAAGGGAAGCGCTCTATCGATATATTTGGCTTCAAGTTCGGCGGTGGGTCCAGCGTGAACGCCGGCTTCGGTGACGCGGCCAACGAGGACGCGTCCGCGAACGATGATGATCTGGTGCGACGTCGCCGGGCACTGGATGTGCTGGGGGCAACGTACGCGTACGTAAGCCTGCTACCCCAGTCACCGCACGGCACGAACGTGAACATCGTGAAGGTGAGCTCGGTCTCGAACGTGAACAACTTCGGGGAGCTGCCGGCAGCCGAAACGGCAACGACTGTGGCGGCACCTGTGGCCGAGCGACGGCGCAAGCGTTCCCCGGATATGGTGCAGCTGACTGCTTTCGAAAAGAAATCGCTCTCGGTCGACAGTGAGCTCAGTCCGGACAAGAAGCTGACAACCCACGAGCGGTTGGAATCGGTGCGTGGAGGAAGTCGTACACTGTTGAGGGAGGATGTGGCACGCAACAAGCGCTCGCCTCAAACGGATGGGCAGGAAGAGGGACAAGAT GGGGGACCACCGAAGGGCCCACCACCACGGGGCGGACCCAAGGGTCCAAGGGGTCGCGGACCACCACCTGGATGTCCACCGCCTGGCGGAGANGAAGAAACAACCGCGACCACGGCT]
[+] EMBL BM577149             [                                                                                                                                                                                                                           ccgagGAAACGGACGCTCTTTCCGTACGGCCACGCCGTGACCTGGTGGAGACGGGCAAGGCAGTGATTCTGCAGGGTGTCTCCAAGCTGAAGGACGCGCTCGACCATGGTGCGAACGTGAAATCGGAAGGGAAGCGCTCTATCGATATATTTGGCTTCAAGTTCGGCGGTGGGTCCAGCGTGAACGCCGGTTTCGGTGACGCGGCCAACGAGGACGCGTCCGCGAACGATGATGATCTGGTGCGACGTCGCCGGGCACTGGATGTGCTGGGGGCAACGTACGCGTACGTAAGCCTGCTACCCCAGTCACCGCACGGCACGAACGTGAACATCGTGAAGGTGAGCTCGGTCTCGAACGTGAACAACTTCGGGGAGCTGCCGGCAGCCGAAACGGCCACGACTGTGGCCGCACCCGTGGCCGAGCGACGTCGCAAGCGTTCCCCGGATATGGTGCAGTTGGCTGCTTTCGAAAAGAAATCGCTCTCGGTCGACAGTGAGCTCAGTCCGGACAAGAAGCTGACAACCCACGAGCGGTTGGAATCGGTGCGTGGAGGAAGTCGTACACTGTTGAGGGAGGATGTAGCACGCAACAAGCGCTCACCTCAAACGGATGGGCAGGAAGAGGGACAAGATGGGGGGACCACCGAAGGGCCCACCACCACGGGGCGGACCCAAGGGTCCAAGG                                                                  ]




>consensus_5479#0
CCGCGGACGCGTGGGAACGGTGCCAGCTGCGTTAAAAAAAAAGCAATAGGGCAACGCTTT
TGGGTAGCGGCTGTGTGCTGCTTAGGAACGTCGTAGGCTACTCTGTCGATGAGTACACAC
CGTGGCTGTGGATTGCTGTCAGTGAGGTTTAGTGCATCATGAAGAGCTTGACTGCTGCAG
CTACGTTGCTTAGCAGCGCTTTGGTGCTGCTGGTGCTGTGTCAAGAAACGGACGCTCTTT
CCGTACGGCCACGCCGTGACCTGGTGGAGACGGGCAAGGCAGTGATTCTGCAGGGTGTCT
CCAAGCTGAAGGACGCGCTCGACCATGGTGCGAACGTGAAATCGGAAGGGAAGCGCTCTA
TCGATATATTTGGCTTCAAGTTCGGCGGTGGGTCCAGCGTGAACGCCGGCTTCGGTGACG
CGGCCAACGAGGACGCGTCCGCGAACGATGATGATCTGGTGCGACGTCGCCGGGCACTGG
ATGTGCTGGGGGCAACGTACGCGTACGTAAGCCTGCTACCCCAGTCACCGCACGGCACGA
ACGTGAACATCGTGAAGGTGAGCTCGGTCTCGAACGTGAACAACTTCGGGGAGCTGCCGG
CAGCCGAAACGGCCACGACTGTGGCCGCACCCGTGGCCGAGCGACGGCGCAAGCGTTCCC
CGGATATGGTGCAGTTGGCTGCTTTCGAAAAGAAATCGCTCTCGGTCGACAGTGAGCTCA
GTCCGGACAAGAAGCTGACAACCCACGAGCGGTTGGAATCGGTGCGTGGAGGAAGTCGTA
CACTGTTGAGGGAGGATGTGGCACGCAACAAGCGCTCGCCTCAAACGGATGGGCAGGAAG
AGGGACAAGATGGGGGACCACCGAAGGGCCCACCACCACGGGGCGGACCCAAGGGTCCAA
GGGGTCGCGGACCACCACCTGGATGTCCACCGCCTGGCGGAGANGAAGAAACAACCGCGA
CCACGGCT

consensusID : consensus_5479#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 660
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGCGTGAACACCGGCTTCGGTGACGCGGCCAACGAGGACGCGTCCGCGAACGAGGATGATCTGTGCGACGTCGCCGGGCACTGGATGTGCTGGGGGCAACGTACGCGTACGTTAGCCTGCTACCCCAGTCACCGCACGGCACGAACGTGAACATCGTGAAGGTGAGCTCGGTCTCGAACGTGAACAACTTCGGGGAGCTGCCGGCAGCAGAAACGGCCACGACTGTGGCCGCACCCGTGGCCGAGCGACGTCGCAAGCGTTCCCCGGATATGGTGCAGCTGGCTGCTTTCGAAAAGAAATCGCTCTCGGTAGATAGTGTGATCGGTCCGGACAAGAAGCAAACAACCCATGAGCGGTTGGAATCGGTGCGTGGAGGAAGTCGTACACTGTTGAGGGAGGATGTGGCACGCAATAAGCGCTCACCTCAATCGGATGGGCAAGAAGAGGGGCAAGATGGCGGACCACCGAAGGGGCCACCACCACGGGGCGGACCCAAGGGTCCAAGGGGTCGCGGACCACCACCTGGATGTCCACCGCCTGGCGGAGATGAAGAAACAACCGCGACCACGGCTACGGTGGAGCGTCGGAAGCGGGAAGTTGTTGAGTTGGTGGAAACGGAACGTAACAAGCGATCT]

[+] EMBL BM626793             [CCGCCCACGCGTCCGCCCACGCGTCCGCGTGAACACCGGCTTCGGTGACGCGGCCAACGAGGACGCGTCCGCGAACGAGGATGATCTGTGCGACGTCGCCGGGCACTGGATGTGCTGGGGGCAACGTACGCGTACGTTAGCCTGCTACCCCAGTCACCGCACGGCACGAACGTGAACATCGTGAAGGTGAGCTCGGTCTCGAACGTGAACAACTTCGGGGAGCTGCCGGCAGCAGAAACGGCCACGACTGTGGCCGCACCCGTGGCCGAGCGACGTCGCAAGCGTTCCCCGGATATGGTGCAGCTGGCTGCTTTCGAAAAGAAATCGCTCTCGGTAGATAGTGTGATCGGTCCGGACAAGAAGCAAACAACCCATGAGCGGTTGGAATCGGTGCGTGGAGGAAGTCGTACACTGTTGAGGGAGGATGTGGCACGCAATAAGCGCTCACCTCAATCGGATGGGCAAGAAGAGGGGCAAGATGGCGGACCACCGAAGGGGCCACCACCACGGGGCGGACCCAAGGGTCCAAGGGGTCGCGGACCACCACCTGGATGTCCACCGCCTGGCGGAGATGAAGAAACAACCGCGACCACGGCTACGGTGGAGCGTCGGAAGCGGGAAGTTGTTGAGTTGGTGGAAACGGAACGTAACAAGCGATCT]




>consensus_5479#1
CCGCCCACGCGTCCGCCCACGCGTCCGCGTGAACACCGGCTTCGGTGACGCGGCCAACGA
GGACGCGTCCGCGAACGAGGATGATCTGTGCGACGTCGCCGGGCACTGGATGTGCTGGGG
GCAACGTACGCGTACGTTAGCCTGCTACCCCAGTCACCGCACGGCACGAACGTGAACATC
GTGAAGGTGAGCTCGGTCTCGAACGTGAACAACTTCGGGGAGCTGCCGGCAGCAGAAACG
GCCACGACTGTGGCCGCACCCGTGGCCGAGCGACGTCGCAAGCGTTCCCCGGATATGGTG
CAGCTGGCTGCTTTCGAAAAGAAATCGCTCTCGGTAGATAGTGTGATCGGTCCGGACAAG
AAGCAAACAACCCATGAGCGGTTGGAATCGGTGCGTGGAGGAAGTCGTACACTGTTGAGG
GAGGATGTGGCACGCAATAAGCGCTCACCTCAATCGGATGGGCAAGAAGAGGGGCAAGAT
GGCGGACCACCGAAGGGGCCACCACCACGGGGCGGACCCAAGGGTCCAAGGGGTCGCGGA
CCACCACCTGGATGTCCACCGCCTGGCGGAGATGAAGAAACAACCGCGACCACGGCTACG
GTGGAGCGTCGGAAGCGGGAAGTTGTTGAGTTGGTGGAAACGGAACGTAACAAGCGATCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5479#0      CCGCGGACGCGTGGGAACGGTGCCAGCTGCGTTAAAAAAAAAGCAATAGGGCAACGCTTT 60
consensus_5479#1      ------------------------------------------------------------
                                                                                  

consensus_5479#0      TGGGTAGCGGCTGTGTGCTGCTTAGGAACGTCGTAGGCTACTCTGTCGATGAGTACACAC 120
consensus_5479#1      ------------------------------------------------------------
                                                                                  

consensus_5479#0      CGTGGCTGTGGATTGCTGTCAGTGAGGTTTAGTGCATCATGAAGAGCTTGACTGCTGCAG 180
consensus_5479#1      ------------------------------------------------------------
                                                                                  

consensus_5479#0      CTACGTTGCTTAGCAGCGCTTTGGTGCTGCTGGTGCTGTGTCAAGAAACGGACGCTCTTT 240
consensus_5479#1      ------------------------------------------------------------
                                                                                  

consensus_5479#0      CCGTACGGCCACGCCGTGACCTGGTGGAGACGGGCAAGGCAGTGATTCTGCAGGGTGTCT 300
consensus_5479#1      ------------------------------------------------------------
                                                                                  

consensus_5479#0      CCAAGCTGAAGGACGCGCTCGACCATGGTGCGAACGTGAAATCGGAAGGGAAGCGCTCTA 360
consensus_5479#1      ------------------------------------------------------------
                                                                                  

consensus_5479#0      TCGATATATTTGGCTTCAAGTTCGGCGGTGGGTCCAGCGTGAACGCCGGCTTCGGTGACG 420
consensus_5479#1      ---------CCGCCCACGCGTCCGCCCACGCGTCC-GCGTGAACACCGGCTTCGGTGACG 50
                                 * *  *  ** ** *   * **** ******** ***************

consensus_5479#0      CGGCCAACGAGGACGCGTCCGCGAACGATGATGATCTGGTGCGACGTCGCCGGGCACTGG 480
consensus_5479#1      CGGCCAACGAGGACGCGTCCGCGAACGAGGATGATCTG-TGCGACGTCGCCGGGCACTGG 109
                      **************************** ********* *********************

consensus_5479#0      ATGTGCTGGGGGCAACGTACGCGTACGTAAGCCTGCTACCCCAGTCACCGCACGGCACGA 540
consensus_5479#1      ATGTGCTGGGGGCAACGTACGCGTACGTTAGCCTGCTACCCCAGTCACCGCACGGCACGA 169
                      **************************** *******************************

consensus_5479#0      ACGTGAACATCGTGAAGGTGAGCTCGGTCTCGAACGTGAACAACTTCGGGGAGCTGCCGG 600
consensus_5479#1      ACGTGAACATCGTGAAGGTGAGCTCGGTCTCGAACGTGAACAACTTCGGGGAGCTGCCGG 229
                      ************************************************************

consensus_5479#0      CAGCCGAAACGGCCACGACTGTGGCCGCACCCGTGGCCGAGCGACGGCGCAAGCGTTCCC 660
consensus_5479#1      CAGCAGAAACGGCCACGACTGTGGCCGCACCCGTGGCCGAGCGACGTCGCAAGCGTTCCC 289
                      **** ***************************************** *************

consensus_5479#0      CGGATATGGTGCAGTTGGCTGCTTTCGAAAAGAAATCGCTCTCGGTCGACAGTGAGCTCA 720
consensus_5479#1      CGGATATGGTGCAGCTGGCTGCTTTCGAAAAGAAATCGCTCTCGGTAGATAGTGTGATCG 349
                      ************** ******************************* ** **** * ** 

consensus_5479#0      GTCCGGACAAGAAGCTGACAACCCACGAGCGGTTGGAATCGGTGCGTGGAGGAAGTCGTA 780
consensus_5479#1      GTCCGGACAAGAAGCAAACAACCCATGAGCGGTTGGAATCGGTGCGTGGAGGAAGTCGTA 409
                      ***************  ******** **********************************

consensus_5479#0      CACTGTTGAGGGAGGATGTGGCACGCAACAAGCGCTCGCCTCAAACGGATGGGCAGGAAG 840
consensus_5479#1      CACTGTTGAGGGAGGATGTGGCACGCAATAAGCGCTCACCTCAATCGGATGGGCAAGAAG 469
                      **************************** ******** ****** ********** ****

consensus_5479#0      AGGGACAAGATGGGGGACCACCGAAGGGCCCACCACCACGGGGCGGACCCAAGGGTCCAA 900
consensus_5479#1      AGGGGCAAGATGGCGGACCACCGAAGGGGCCACCACCACGGGGCGGACCCAAGGGTCCAA 529
                      **** ******** ************** *******************************

consensus_5479#0      GGGGTCGCGGACCACCACCTGGATGTCCACCGCCTGGCGGAGANGAAGAAACAACCGCGA 960
consensus_5479#1      GGGGTCGCGGACCACCACCTGGATGTCCACCGCCTGGCGGAGATGAAGAAACAACCGCGA 589
                      ******************************************* ****************

consensus_5479#0      CCACGGCT---------------------------------------------------- 968
consensus_5479#1      CCACGGCTACGGTGGAGCGTCGGAAGCGGGAAGTTGTTGAGTTGGTGGAAACGGAACGTA 649
                      ********                                                    

consensus_5479#0      -----------
consensus_5479#1      ACAAGCGATCT 660