cluster # 548

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Anopheles gambiae
cluster # 548 cluster # 548 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_548#0 length = 574 sequences # 1

consensus_548#1 length = 441 sequences # 1

consensusID : consensus_548#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 574
fasta sequence

                              [CGACCCACGCGTCCGCTTTCTTTCTCTCGCCGCATTCGCTGACTCTCTTTCACACGATCCTACACGCTACACGATGGAAGTGTAGGGAAGTAGGGATAAAGCACCGGAAATTATGATAAAACCAACGAATAGAACAGAAAAGAAAAACACGAAACAACGTCACTGCATTATAGATGTTCCCATCAGCGCCACGATGAATGGAGTCCACGGCACACAAAAACCACAAACATAGCATATAAAACACAGCAAACGTCTTAGGCTAATATAGTCAACAACAGTCAGGGTATCAGTTAGTCAGGGGAGTGTATACTAAAGGTTGCAAAACTATTAGGACTGCATTTCAACAAACCCTACAGAACGCTCACTCCATTCACGAAACACACTCAAAATAGTTCCCTTCTTCTCTCACATCAACTGTTGTTGCCCGCTGTTACACGTTAGTGTTGCGTAGTATAGATAACCGGAGCTGCGAAATTTATCCCCCCCACCCCGGCAAGGATCATACATGATCCATCCTTACTAATGCTGAATGTCCAATCAAAACAATGATCGTGGGTGTAAATTGTAAATGTTC]

[+] EMBL BM621793             [CGACCCACGCGTCCGCTTTCTTTCTCTCGCCGCATTCGCTGACTCTCTTTCACACGATCCTACACGCTACACGATGGAAGTGTAGGGAAGTAGGGATAAAGCACCGGAAATTATGATAAAACCAACGAATAGAACAGAAAAGAAAAACACGAAACAACGTCACTGCATTATAGATGTTCCCATCAGCGCCACGATGAATGGAGTCCACGGCACACAAAAACCACAAACATAGCATATAAAACACAGCAAACGTCTTAGGCTAATATAGTCAACAACAGTCAGGGTATCAGTTAGTCAGGGGAGTGTATACTAAAGGTTGCAAAACTATTAGGACTGCATTTCAACAAACCCTACAGAACGCTCACTCCATTCACGAAACACACTCAAAATAGTTCCCTTCTTCTCTCACATCAACTGTTGTTGCCCGCTGTTACACGTTAGTGTTGCGTAGTATAGATAACCGGAGCTGCGAAATTTATCCCCCCCACCCCGGCAAGGATCATACATGATCCATCCTTACTAATGCTGAATGTCCAATCAAAACAATGATCGTGGGTGTAAATTGTAAATGTTC]




>consensus_548#0
CGACCCACGCGTCCGCTTTCTTTCTCTCGCCGCATTCGCTGACTCTCTTTCACACGATCC
TACACGCTACACGATGGAAGTGTAGGGAAGTAGGGATAAAGCACCGGAAATTATGATAAA
ACCAACGAATAGAACAGAAAAGAAAAACACGAAACAACGTCACTGCATTATAGATGTTCC
CATCAGCGCCACGATGAATGGAGTCCACGGCACACAAAAACCACAAACATAGCATATAAA
ACACAGCAAACGTCTTAGGCTAATATAGTCAACAACAGTCAGGGTATCAGTTAGTCAGGG
GAGTGTATACTAAAGGTTGCAAAACTATTAGGACTGCATTTCAACAAACCCTACAGAACG
CTCACTCCATTCACGAAACACACTCAAAATAGTTCCCTTCTTCTCTCACATCAACTGTTG
TTGCCCGCTGTTACACGTTAGTGTTGCGTAGTATAGATAACCGGAGCTGCGAAATTTATC
CCCCCCACCCCGGCAAGGATCATACATGATCCATCCTTACTAATGCTGAATGTCCAATCA
AAACAATGATCGTGGGTGTAAATTGTAAATGTTC

consensusID : consensus_548#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 441
fasta sequence

                              [CCGCGGACGCGTGGGCGGACGCGTGGGAGAAAAGAAAAACACGAAACAACGTCACTGCATTATAGATGTTCCCATCAGCGCCACGATGAATGGAGTCCACGGCACACAAAAACCACAAACATAGCATATAAAACACAGCAAACGTCTTAGGCTAATATAGTCAACAACAGTCAGGGTATCAGTTAGTCAGGGGAGTGTATACTAAAGGTTGCAAAACTATTAGGACTGCATTTCAACAAACCCTACAGAACGCTCACTCCATTCACGAAACACACTCAAAATAGTTCCCTTCTTCTCTCACATCAACTGTTGTTGCCCGCTGTTACACGTTAGTGTTGCGTAGTATAGATAACCGGAGCTGCGAAATTTATCCCCCCCACCCCGGCAAGGATCATACATGATCCATCCTTACTAATGCTGAATGTCCAATCAAAACAATGA]

[+] EMBL BM645305             [CCGCGGACGCGTGGGCGGACGCGTGGGAGAAAAGAAAAACACGAAACAACGTCACTGCATTATAGATGTTCCCATCAGCGCCACGATGAATGGAGTCCACGGCACACAAAAACCACAAACATAGCATATAAAACACAGCAAACGTCTTAGGCTAATATAGTCAACAACAGTCAGGGTATCAGTTAGTCAGGGGAGTGTATACTAAAGGTTGCAAAACTATTAGGACTGCATTTCAACAAACCCTACAGAACGCTCACTCCATTCACGAAACACACTCAAAATAGTTCCCTTCTTCTCTCACATCAACTGTTGTTGCCCGCTGTTACACGTTAGTGTTGCGTAGTATAGATAACCGGAGCTGCGAAATTTATCCCCCCCACCCCGGCAAGGATCATACATGATCCATCCTTACTAATGCTGAATGTCCAATCAAAACAATGA]




>consensus_548#1
CCGCGGACGCGTGGGCGGACGCGTGGGAGAAAAGAAAAACACGAAACAACGTCACTGCAT
TATAGATGTTCCCATCAGCGCCACGATGAATGGAGTCCACGGCACACAAAAACCACAAAC
ATAGCATATAAAACACAGCAAACGTCTTAGGCTAATATAGTCAACAACAGTCAGGGTATC
AGTTAGTCAGGGGAGTGTATACTAAAGGTTGCAAAACTATTAGGACTGCATTTCAACAAA
CCCTACAGAACGCTCACTCCATTCACGAAACACACTCAAAATAGTTCCCTTCTTCTCTCA
CATCAACTGTTGTTGCCCGCTGTTACACGTTAGTGTTGCGTAGTATAGATAACCGGAGCT
GCGAAATTTATCCCCCCCACCCCGGCAAGGATCATACATGATCCATCCTTACTAATGCTG
AATGTCCAATCAAAACAATGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_548#0      CGACCCACGCGTCCGCTTTCTTTCTCTCGCCGCATTCGCTGACTCTCTTTCACACGATCC 60
consensus_548#1      ------------------------------------------------------------
                                                                                 

consensus_548#0      TACACGCTACACGATGGAAGTGTAGGGAAGTAGGGATAAAGCACCGGAAATTATGATAAA 120
consensus_548#1      -------------------------------------------CCGCGGAC---GCGTGG 14
                                                                ***   *    *     

consensus_548#0      ACCAACGAATAGAACAGAAAAGAAAAACACGAAACAACGTCACTGCATTATAGATGTTCC 180
consensus_548#1      GCGGACGCGTGGGA--GAAAAGAAAAACACGAAACAACGTCACTGCATTATAGATGTTCC 72
                      *  ***  * * *  ********************************************

consensus_548#0      CATCAGCGCCACGATGAATGGAGTCCACGGCACACAAAAACCACAAACATAGCATATAAA 240
consensus_548#1      CATCAGCGCCACGATGAATGGAGTCCACGGCACACAAAAACCACAAACATAGCATATAAA 132
                     ************************************************************

consensus_548#0      ACACAGCAAACGTCTTAGGCTAATATAGTCAACAACAGTCAGGGTATCAGTTAGTCAGGG 300
consensus_548#1      ACACAGCAAACGTCTTAGGCTAATATAGTCAACAACAGTCAGGGTATCAGTTAGTCAGGG 192
                     ************************************************************

consensus_548#0      GAGTGTATACTAAAGGTTGCAAAACTATTAGGACTGCATTTCAACAAACCCTACAGAACG 360
consensus_548#1      GAGTGTATACTAAAGGTTGCAAAACTATTAGGACTGCATTTCAACAAACCCTACAGAACG 252
                     ************************************************************

consensus_548#0      CTCACTCCATTCACGAAACACACTCAAAATAGTTCCCTTCTTCTCTCACATCAACTGTTG 420
consensus_548#1      CTCACTCCATTCACGAAACACACTCAAAATAGTTCCCTTCTTCTCTCACATCAACTGTTG 312
                     ************************************************************

consensus_548#0      TTGCCCGCTGTTACACGTTAGTGTTGCGTAGTATAGATAACCGGAGCTGCGAAATTTATC 480
consensus_548#1      TTGCCCGCTGTTACACGTTAGTGTTGCGTAGTATAGATAACCGGAGCTGCGAAATTTATC 372
                     ************************************************************

consensus_548#0      CCCCCCACCCCGGCAAGGATCATACATGATCCATCCTTACTAATGCTGAATGTCCAATCA 540
consensus_548#1      CCCCCCACCCCGGCAAGGATCATACATGATCCATCCTTACTAATGCTGAATGTCCAATCA 432
                     ************************************************************

consensus_548#0      AAACAATGATCGTGGGTGTAAATTGTAAATGTTC 574
consensus_548#1      AAACAATGA------------------------- 441
                     *********