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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5485#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 881 fasta sequence
[CCGCGTTTTCGTCCGGACGTGCGTGAGCAGTGCGTTCACCGTGAAGGTCGTGCCTAGGGGTTTGTAACAACATTTCATCCCCAGGTAAGTGGGGACCAGTCCAGTCAAATCGGAAGCCTTTCCACTCTCAACAGCTTCAGGCTAATCATACCGACAGCTAGCAAAAGTGGAGAGGAAAGTGTCCTTTTATTAGAATCATTAGCTGGTAGCAGCCATTCGGGTTCCCTGTGACGGGAGCTGTTGAGTTTGTGTTCGAGATTACGCCACTTTACGAATCATCCGGATTAATCTCAAGTGTGTGTACGGTGCGGGTACGTTTGAGTGTGTCAAATGTTTATTTGCTAAGTATATTAGCAACAGCAGCAGTAGTGCGTAGGTATGCAAAAGGCAACAACGTGAAGAGTGTGTGAGTGTTTGCTAGAGCAACGCTGCCCCAAAACAAGTGCTGTTGTGTAGAAAGGGTAAATAGGTCGTAGTGCAAAAGTATGTCATTCTCAGTGTGAAGTTAGACCAGCGCGGGCTCAAGTGTGAGAGCGTGCACAGGGTCCAGCAGTGCATATGGGTTTGACAGGTGCAACCCGGAACGGATTCCCCGGGTGAACTGGCACGTGCGATCTATCAGCAGTCGACAAGTCAAAGCTGCCGAGAGCGTCCAACAGCTAGCGTAGTGACTCACTCACCGACCAGCATCAATCACCGGACTCACCTTCCAGCAGTGAGGTTGACAGTTTGCTGCAGCCACCGTCCAGCGAAGCCAGCGAGATGGCGGGCGCAAGCAAAGAGCTAAGCCCGGAAAAGCAATCAGCACCGCCGGAGTCCTCCGAGGTGGCAAAAACGAAGGACGACAGCATCATGACGCTGCTGTACTCGTTCGCGAAGAA]
[+] EMBL BM580760 [CCGCGTTTTCGTCCGGACGTGCGTGAGCAGTGCGTTCACCGTGAAGGTCGTGCCTAGGGGTTTGTAACAACATTTCATCCCCAGGTAAGTGGGGACCAGTCCAGTCAAATCGGAAGCCTTTCCACTCTCAACAGCTTCAGGCTAATCATACCGACAGCTAGCAAAAGTGGAGAGGAAAGTGTCCTTTTATTAGAATCATTAGCTGGTAGCAGCCATTCGGGTTCCCTGTGACGGGAGCTGTTGAGTTTGTGTTCGAGATTACGCCACTTTACGAATCATCCGGATTAATCTCAAGTGTGTGTACGGTGCGGGTACGTTTGAGTGTGTCAAATGTTTATTTGCTAAGTATATTAGCAACAGCAGCAGTAGTGCGTAGGTATGCAAAAGGCAACAACGTGAAGAGTGTGTGAGTGTTTGCTAGAGCAACGCTGCCCCAAAACAAGTGCTGTTGTGTAGAAAGGGTAAATAGGTCGTAGTGCAAAAGTATGTCATTCTCAGTGTGAAGTTAGACCAGCGCGGGCTCAAGTGTGAGAGCGTGCACAGGGTCCAGCAGTGCATATGGGTTTGACAGGTGCAACCCGGAACGGATTCCCCGGGTGAACTGGCACGTGCGATCTATCAGCAGTCGACAAGTCAAAGCTGCCGAGAGCGTCCAACAGC ]
[+] EMBL BM632341 [ cCGGGTTCCCTGTGACGGGAGCTGTTGAGTTTGTGTTCGAGATTACGCCACTTTAAGAATCATCCGGATTAATCTCAAGTGTGTGTACGGTGCGGGTACGTTTGAGTGTGTCAAATGTTTATTTGCTAAGTATATTAGCAACAGCAGCAGTAGTGCGTAGGTATGCAAAAGGCAACAACGTGAAGAGTGTGTGAGTGTTTGCTAGAGCAACGCTGCCCCAAAACAAGTGCTGTTGTGTAG AAGGGTAAATAGGTCGTAGTGCAAAAGTATGTCATTCTCAGTGTGAAGTCAGACCAGCGCGGGCTCAAGTGCGAGAGCGTGCACA GGTCCAGCAGTGCATAT GGTTTGACAGGTGCAACCCGGAACGGATTCCCCGGGTGAACTGGCACGTGCGATCTATCAGCAGTCGACAAGTCAAAGCCACCGAGAGCGTCCAACAGCTAGCGTAGTGACTCACTCACCGACCAGCATCAATCACCGGACTCACCTTCCAGCAGTGAGGTTGACAGTTTGCTGCAGCCACCGTCCAGCGAAGCCAGCGAGATGGCGGGCGCAAGCAAAGAGCTAAGCCCGGAAAAGCAATCAGCACCGCCGGAGTCCTCCGAGGTGGCAAAAACGAAGGACGACAGCATCATGACGCTGCTGTACTCGTTCGCGAAGAA]
consensusID : consensus_5485#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 702 fasta sequence
[CCGCCCACGCGTCCGCACGACGCAGCGTAGCGAAGGCGTCCGCTCTCGCCAACGATAAGGAAGTCATCCTGGCCCGGCTGCACGATCTGCCGGCTTGGGTATTCTTTCCCGACGTTGAACGTTGCGAATGGCTTAACAGGATCCTGAAACAAGTCTGGCCCAATGCAAACTTTTACGCGAAAAATCTCATCAAGGAATCGATCGAACCCAACATCCAGCAGGCGATGGCTGGCTACAAGCTGAACGGATTCAAATTTGACCGAATGATTCTGGGAACGATTCCACCACGCATCGGCGGCGTCAAGGTGTACGACAAGAACGTGTCTCGCAATGAAATCATCATGGATCTGGACCTGTTCTATGCGGGCGACTGCGATATCAGCTTTGCGCTCAGCGGGCTGCGGGGTGGCATCAAGGACTTCCAGATTCACGGCACGGTGCGCGTAATAATGAAGCCACTCATTTCCCAGATGCCGCTCATCGGCGGGCTGCAGATATTCTTCCTCAACAATCCCAACATTGACTTTAACCTGGTCGGCGTGGTGGATCTGCTCGATATGCCCGGGCTGAGCGACATACTGCGAAAGATTATCGTGGAGCAGGTGGCCGCCATCATGGTCCTGCCGAACAAGCTGCCTATCGTGCTGAGCGATGGGGTGCCGGCACTGTCGTTGAAGATGCCCGAACCCGAGGGCGTACTTA]
[+] EMBL BM577238 [CCGCCCACGCGTCCGCACGACGCAGCGTAGCGAAGGCGTCCGCTCTCGCCAACGATAAGGAAGTCATCCTGGCCCGGCTGCACGATCTGCCGGCTTGGGTATTCTTTCCCGACGTTGAACGTTGCGAATGGCTTAACAGGATCCTGAAACAAGTCTGGCCCAATGCAAACTTTTACGCGAAAAATCTCATCAAGGAATCGATCGAACCCAACATCCAGCAGGCGATGGCTGGCTACAAGCTGAACGGATTCAAATTTGACCGAATGATTCTGGGAACGATTCCACCACGCATCGGCGGCGTCAAGGTGTACGACAAGAACGTGTCTCGCAATGAAATCATCATGGATCTGGACCTGTTCTATGCGGGCGACTGCGATATCAGCTTTGCGCTCAGCGGGCTGCGGGGTGGCATCAAGGACTTCCAGATTCACGGCACGGTGCGCGTAATAATGAAGCCACTCATTTCCCAGATGCCGCTCATCGGCGGGCTGCAGATATTCTTCCTCAACAATCCCAACATTGACTTTAACCTGGTCGGCGTGGTGGATCTGCTCGATATGCCCGGGCTGAGCGACATACTGCGAAAGATTATCGTGGAGCAGGTGGCCGCCATCATGGTCCTGCCGAACAAGCTGCCTATCGTGCTGAGCGATGGGGTGCCGGCACTGTCGTTGAAGATGCCCGAACCCGAGGGCGTACTTA]
consensusID : consensus_5485#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 657 fasta sequence
[CCGGACCAGTGTGGTTCACGTTCGCGTAGAAGGTGGTCAACGGGTTTTACGTCGAGGTTATTGCAAAAAAAAAACGGTACCAAAATTCGAGGGGCCGTGGTTCTAGAATAGCATCTTGATCTAAAATAAACATTGTGATCTTTGGTGCCGTGGAGTGTGGATGGAAAACAGTGCCAAAAAAGTGTATTTCGAGTAAAAGGTTTGGTTTGGCGGAGAGTCTGGAGGCGATCATCAGCGTTCAGTTGTGTAGCGTAGCAGCATCAAAATGAGTGACTCACTCACCGACCAGCATCAATCACCGGACTCACCTTCCAGCAGTGAGGTCGACAGTTTGCTGCAGCCACCGTCCAGCGAAGCCAGCGAGATGGCGGGCGCAAGCAAAGAGCTAAGCCCGGAAAAGCAATCAGCACCGCCGGAGTCCTCCGAGGTGGCGAAAACGAAGGACGACAGCATCATGACGCTGCTGTACTCGTTCGCGAAGAAGGTGGTGACGGTCGGTATCATCTACTTCGTCGGCTACATGGGCTGGTCGGTGGCGTGGCTCATCACGCCCGTCATCCTGTCGGTGGCACGCGAATCCTGGCGCAAAACGAACGACACACGACGCAGCGTAGCGAAGGCGTCCGCTCTCGCCAACGATAAGGAAGTCATCCTGGC]
[+] EMBL BM614656 [CCGGACCAGTGTGGTTCACGTTCGCGTAGAAGGTGGTCAACGGGTTTTACGTCGAGGTTATTGCAAAAAAAAAACGGTACCAAAATTCGAGGGGCCGTGGTTCTAGAATAGCATCTTGATCTAAAATAAACATTGTGATCTTTGGTGCCGTGGAGTGTGGATGGAAAACAGTGCCAAAAAAGTGTATTTCGAGTAAAAGGTTTGGTTTGGCGGAGAGTCTGGAGGCGATCATCAGCGTTCAGTTGTGTAGCGTAGCAGCATCAAAATGAGTGACTCACTCACCGACCAGCATCAATCACCGGACTCACCTTCCAGCAGTGAGGTCGACAGTTTGCTGCAGCCACCGTCCAGCGAAGCCAGCGAGATGGCGGGCGCAAGCAAAGAGCTAAGCCCGGAAAAGCAATCAGCACCGCCGGAGTCCTCCGAGGTGGCGAAAACGAAGGACGACAGCATCATGACGCTGCTGTACTCGTTCGCGAAGAAGGTGGTGACGGTCGGTATCATCTACTTCGTCGGCTACATGGGCTGGTCGGTGGCGTGGCTCATCACGCCCGTCATCCTGTCGGTGGCACGCGAATCCTGGCGCAAAACGAACGACACACGACGCAGCGTAGCGAAGGCGTCCGCTCTCGCCAACGATAAGGAAGTCATCCTGGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5485#0 CCGCGTTTTCGTCCGGACGTGCGTGAGCAGTGCGTTCACCGTGAAGGTCGTGCCTAGGGG 60
consensus_5485#2 ------------------------------------------------------------
consensus_5485#1 ------------------------------------------------------------
consensus_5485#0 TTTGTAACAACATTTCATCCCCAGGTAAGTGGGGACCAGTCCAGTCAAATCGGAAGCCTT 120
consensus_5485#2 ------------------------------------------------------------
consensus_5485#1 ------------------------------------------------------------
consensus_5485#0 TCCACTCTCAACAGCTTCAGGCTAATCATACCGACAGCTAGCAAAAGTGGAGAGGAAAGT 180
consensus_5485#2 ------------------------------------------------------------
consensus_5485#1 ------------------------------------------------------------
consensus_5485#0 GTCCTTTTATTAGAATCATTAGCTGGTAGCAGCCATTCGGGTTCCCTGTGACGGGAGCTG 240
consensus_5485#2 ------------------------------------------------------------
consensus_5485#1 ------------------------------------------------------------
consensus_5485#0 TTGAGTTTGTGTTCGAGATTACGCCACTTTACGAATCATCCGGATTAATCTCAAGTGTGT 300
consensus_5485#2 ------------------------------------------------------------
consensus_5485#1 ------------------------------------------------------------
consensus_5485#0 GTACGGTGCGGGTACGTTTGAGTGTGTCAAATGTTTATTTGCTAAGTATATTAGCAACAG 360
consensus_5485#2 ------------------------------------------------------------
consensus_5485#1 -----------------------------------------CCGCCCACGCGTCCGCACG 19
consensus_5485#0 CAGCAGTAGTGCGTAGGTATGCAAAAGGCAACAACGTGAAGAGTGTGTGAGTGTTTGCTA 420
consensus_5485#2 ----------CCGGACCAGTGTGGTTCACGTTCGCGTAGAAGGTG-GTCAACGGGTTTTA 49
consensus_5485#1 ACGCAGCGTAGCGAAGGCGTCCG-CTCTCGCCAACGATAAGGAAG--TCATCCTGGCCCG 76
** * * * ** * * * *
consensus_5485#0 GAGCAACGCTGCCCCAAAACAAGTGCTGTTGTGTAGAAAGGGTAAATAGGTCG--TAGTG 478
consensus_5485#2 CGTCGAGGTTATTGCAAAAAAAAAACGG-----TACCAAAATTCGAGGGGCCG--TGGTT 102
consensus_5485#1 GCTGCACGATCTGCCGGCTTGGGTATTCTT---TCCCGACGTTGAACGTTGCGAATGGCT 133
* * * * * * * * ** * *
consensus_5485#0 CAAAAGTATGTCATTCTCAGTGTGA---AGTTAGACCAGCGCGGGCTCAAGTGTGA---G 532
consensus_5485#2 CTAGAATA--GCAT-CTTGATCTAA---AAT--AAACATTGTGATCTTTGGTGCCGT-GG 153
consensus_5485#1 TAACAGGATCCTGAAACAAGTCTGGCCCAATGCAAACTTTTACGCGAAAAATCTCATCAA 193
* * * * * * * * * *
consensus_5485#0 AGCGTGCACAGGGTCCAGCAGTGCATATGGGTTTGACAGGTGCAACCCGGA-----ACGG 587
consensus_5485#2 AGTGTGGATGGAAAACAGTGCCAAAAAAGTGTATTTCGAGTAAAA----GG-----TTTG 204
consensus_5485#1 GGAATCGATCGAACCCAACATCCAGCAGGCGATGGCTGGCTACAAGCTGAACGGATTCAA 253
* * * * ** * * * * **
consensus_5485#0 ATTCCCCGGGTGAACTGGCACGTGCGATCTATCAGCAGTCGACAAGTCAAAGCTGCCGAG 647
consensus_5485#2 GTTTGGCGGAGAGTCTGG---AGGCGATC-ATCAGCGTTC----------AGTTGTGTAG 250
consensus_5485#1 ATTTGACCGAATGATTCTGGGAACGATTCCACCACGCATCGGCGGCGTCAAGGTGTACGA 313
** * * * ** * ** ** ** **
consensus_5485#0 AGC-GTCCAACAGCTAGCGTAGTGACTCACTCACC--GACCAGCATCAATCACCGGACTC 704
consensus_5485#2 CGT-AGC-AGCATCAAAATGAGTGACTCACTCACC--GACCAGCATCAATCACCGGACTC 306
consensus_5485#1 CAAGAACGTGTCTCGCAATGAAATCATCATGGATCTGGACCTGTTCTATGCGGGCGACTG 373
* * * *** * * **** * * * ****
consensus_5485#0 ACCTTCCAGCAGTGAGGTTGACAGTTTGCTGCA-GCCACC--GTCCAGCGAAGCCAGCGA 761
consensus_5485#2 ACCTTCCAGCAGTGAGGTCGACAGTTTGCTGCA-GCCACC--GTCCAGCGAAGCCAGCGA 363
consensus_5485#1 CGATATCAGCTTTGCGCTCAGCGGGCTGCGGGGTGGCATCAAGGACTTCCAGATTCACGG 433
* **** ** * * * * *** * * ** * * * * * **
consensus_5485#0 GATGGCGGGCGCAAGCAAAGAGCTAAGCCCGGAAAAGCAATCAGCACCGCCGGAGTCCTC 821
consensus_5485#2 GATGGCGGGCGCAAGCAAAGAGCTAAGCCCGGAAAAGCAATCAGCACCGCCGGAGTCCTC 423
consensus_5485#1 CACGGTGCGCGTAATAATGAAGCCACTCATTTCCCAGATGCCGCT--CATCGGCGGGCTG 491
* ** * *** ** * *** * * ** * * *** * **
consensus_5485#0 CGAGGTGGCAAAAACGAAGGACGACAGCATCATGACGCTGCTGTACTCGTTCGCGAAGAA 881
consensus_5485#2 CGAGGTGGCGAAAACGAAGGACGACAGCATCATGACGCTGCTGTACTCGTTCGCGAAGAA 483
consensus_5485#1 C-AGATATTCTTCCTCAACAATCCCAACAT--TGACTTTAACCTGGTCGG-CGTGGTGGA 547
* ** * ** * ** *** **** * * *** ** * * *
consensus_5485#0 ------------------------------------------------------------
consensus_5485#2 GGTGGTGACGGTCGGTATCATCTACTTCGTCGGCTACATGGGCTGGTCGGTGGCGTGGCT 543
consensus_5485#1 TCTGCT--CGATATGCCCGGGCTGAGCGACATACTGCGAAAGATTATCG-TGGAGCAGGT 604
consensus_5485#0 ------------------------------------------------------------
consensus_5485#2 CATCACGCCCGTCATCCTGTCGGTGGCACGCGAATCCTGGCGCAAAACGAACGACACACG 603
consensus_5485#1 GGCCGCCATCATGGTCCTGCCG--AACAAGCTGCCTATCGTGCTGAGCGATGGGGTGCCG 662
consensus_5485#0 ------------------------------------------------------
consensus_5485#2 ACGCAGCGTAGCGAAGGCGTCCGCTCTCGCCAACGATAAGGAAGTCATCCTGGC 657
consensus_5485#1 GCACTGT-CGTTGAAGATGCCCGAACCCGAGGGCGTACTTA------------- 702
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||