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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5493#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 959 fasta sequence
[TTGTGCATTAGTGCGAAAGAGCGAAAGAAAGAGAGAGAGAGAGAAAGTGAAAAGTCTGAAACGGCCCTTATAAAAAAATCCGCATAGTACGCTAAGTAAGAGAGAATACACAACAACGTTAACTGATAAGTCGTTTATATACACGAATATATGTTTTATATAAAAGAAGAAAAAAAGTGAAACACGCACGCACGCGAGTAAAAGAAGGAAGACAAGGTGAGAGTAGTCGGGAAGTTAGTTGAATAAGTCATCAAAAGTTGTAAAGCAGAGTAAAGAAGAGAATGATGATTGCATGAAAAAATGAGCTAAACTGAACTGAGAAAACT--AAAAAAAAAAGAAA--AGAAATGTTTAGGGACAAACCCGTATCGAAATCTATACCGAAACCCTTATTCATAAAAGGCGGAACTTAAGTACAGCAAACAGCAGCAGCAGCAGAAGCAGCAGAAGCAGCAGCAGCAGCAATTAATATACTATTACCTACTATTGCAAACTACTATTGCTAATTACTATTAACTATTACTACTGCTACTACAACTATTGCTAGAGTGTACACTTGCCGTGAAGTGCATTTTTTGCCTGGCAGGAGTGTTGCGCATAGCATTTCCTTTTTCCCCTTTTGTTTTTCGAAAGTAACCAAACAATCTGAATTATATTGATTTTATTGTCTTAGTTTATACCTTTTTTTCTCCGAGAAGATCGTAAAAATTTAGCATGCATCGCATAAAAAAACCTTTCAGTTGATTTAAATACAATTTTCCCTTACAAAGTCGCTTGTGCAGATGCAGTTGTTGTAAGAAATAGGAGAGAGAAGAGAAAAAAATCGAAACAATACACCCCAAAACCAACACACCCCATTTAAATAAACAAGGAAACATTAATCAACAATCAATAGTAAATCCGGAAGGCGTGGAGAGGATAAGTGCAACAAGATTAAAACACCACTATACAAACCGAACAAC]
[+] EMBL BX628445 [TTGTGCATTAGTGCGAAAGAGCGAAAGAAAGAGAGAGAGAGAGAAAGTGAAAAGTCTGAAACGGCCCTTATAAAAAAATCCGCATAGTACGCTAAGTAAGAGAGAATACACAACAACGTTAACTGATAAGTCGTTTATATACACGAATATATGTTTTATATAAAAGAAGAAAAAAAGTGAAACACGCACGCACGCGAGTAAAAGAAGGAAGACAAGGTGAGAGTAGTCGGGAAGTTAGTTGAATAAGTCATCAAAAGTTGTAAAGCAGAGTAAAGAAGAGAATGATGATTGCATGAAAAAATGAGCTAAACTGAACTGAGAAAACT AAAAAAAAAAGAAA AGAAATGTTTAGGGACAAACCCGTATCGAAATCTATACCGAAACCCTTATTCATAAAAGGCGGAACTTAAGTACAGCAAACAGCAGCAGCAGCAGAAGCAGCAGAAGCAGCAGCAGCAGCAATTAATATACTATTACCTACTATTGCAAACTACTATTGCTAATTACTATTAACTATTACTACTGCTACTACAACTATTGCTAGAGTGTACACTTGCCGTGAAGTGCATTTTTTGCCTGGCAGGAGTGTTGCGCATAGCATTTCCTTTTTCCCCTTTTGTTTTTCGAAAGTAACCAAACAATCTGAATTATATTGATTTTATTGTCTTAGTTTATACCTTTTTTTCTCCGAGAAGATCGTAAAAATTTAGCATGCATCGCATAAAAAAACCTTTCAGTTGATTTAAATACAATTTTCCCTTACAAAGTCGCTTGTG ]
[+] EMBL BM577342 [ ccgAGCAGAGTAAAGAAGAGAATGATGATTGCATGAAAAAATGAGCTAAACTGAACTGAGAAAACTAAAAAAAAAAAAGAAAAGAGAAATGTTTAGGGACAAACCCGTATCGAAATCAATACCGAAACCCTTATTCATAAAAGGCAGAACTTAAGTACAGCAAACAGCAGCAGC AGCAGCAGA AGCAGCAGCAATTAATATACTATTACCTACTATTGCAAACTACTATTGCTAATTACTATTAACTATTACTACTGCTACTACAACTATTGCTAGAGTGTACACTTGCCGTGAAGTGCATTTTTTGCCTGGCAGGAGTGTTGCGCATAGCATTTCCTTTTTCCCCTTTTGTTTTTCGAAAGTAACCAAACAATCTGAATTATATTGATTTTATTGTCTTAGTTTATACC TTTTTTCTCCGAGAAGATCGTAAAAATTTAGCATGCATCGCATAAAAAAACCTTTCAGTTGATTTAAATACAATTTTCCCTTACAAAGTCGCTTGTGCAGATGCAGTTGTTGTAAGAAATAGGAGAGAGAAGAGAAAAAAATCGAAACAATACACCCCAAAACCAACACACCCCATTTAAATAAACAAGGAAACATTAATCAACAATCAATAGTAAATCCGGAAGGCGTGGAGAGGATAAGTGCAACAAGATTAAAACACCACTATACAAACCGAACAAC]
consensusID : consensus_5493#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 754 fasta sequence
[TCAATGCAGTAACAGCAGAGGAGGAGGGATCGTCACGGGGGCACAGGGGCGAAGAAATGACACAACAAGTAAGCATAACTAAGGGAAACTTCAACTTACACACATAAGGAGGAGGAGGGAAAAAATCCGCATAGCACGCTAAGTAAGAGAGAATACACAACAACGTTAACTGATAAGTCGTTTATATACACGAATATATGTTTTATATAAAAGAAGAAAAAAAGTGAAACACGCACGCACGCGAGTAAAAGAAGGAAGACAAGGTGAGAGTAGTCGGGAAGTTAGTTGAATAAGTCATCAAAAGTTGCAAAGCAGAGTAAAGAAGAGAATGATGATTGCATGAAAAAATGAGCTAAACTGAACTGAGAAAACAAAAAAAAAAGAAAAGAAATGTTTAGGGACAAACCCGTATCGAAATCTATACCGAAACCCTTATTCATAAAAGGCGGAACTTAAGTACAGCAAACAGCAGCAGCAGCAGCAGAAGCAGCAGCAATTAATATACTATTACCTACTATTGCAAACTACTATTGCTAATTACTATTAACTATTACTACTGCTACTACAACCTATTGCTAGAGTGTACACTTGCCGTGAAGTGCATTTTTTGCCTGGCAGGAGTGTTGCGCATAGCATTTCCTTTTTCCCCCTTTTGTTTTTCGAAACTAACCAAACAATCTGAATTATATTGATTTTATTGTCTTAGTTTATACCTTTTTTTTCTCCGAGAAGATCGTAAAAATTTAGCATGCAT]
[+] EMBL BX608176 [TCAATGCAGTAACAGCAGAGGAGGAGGGATCGTCACGGGGGCACAGGGGCGAAGAAATGACACAACAAGTAAGCATAACTAAGGGAAACTTCAACTTACACACATAAGGAGGAGGAGGGAAAAAATCCGCATAGCACGCTAAGTAAGAG ]
[+] EMBL BM634657 [ ccgCAACAAGTAAGCATAACTAAGGGAAACTTCAACTTACAGACATAAGGAGGAGGAGGGAAAAAATCCGCATAGTACGCTAAGTAAGAGAGAATACACAACAACGTTAACTGATAAGTCGTTTATATACACGAATATATGTTTTATATAAAAGAAGAAAAAAAGTGAAACACGCACGCACGCGAGTAAAAGAAGGAAGACAAGGTGAGAGTAGTCGGGAAGTTAGTTGAATAAGTCATCAAAAGTTGCAAAGCAGAGTAAAGAAGAGAATGATGATTGCATGAAAAAATGAGCTAAACTGAACTGAGAAAACAAAAAAAAAAGAAAAGAAATGTTTAGGGACAAACCCGTATCGAAATCTATACCGAAACCCTTATTCATAAAAGGCGGAACTTAAGTACAGCAAACAGCAGCAGCAGCAGCAGAAGCAGCAGCAATTAATATACTATTACCTACTATTGCAAACTACTATTGCTAATTACTATTAACTATTACTACTGCTACTACAACCTATTGCTAGAGTGTACACTTGCCGTGAAGTGCATTTTTTGCCTGGCAGGAGTGTTGCGCATAGCATTTCCTTTTTCCCCCTTTTGTTTTTCGAAACTAACCAAACAATCTGAATTATATTGATTTTATTGTCTTAGTTTATACCTTTTTTTTCTCCGAGAAGATCGTAAAAATTTAGCATGCAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5493#0 ------------------------------------TTGTGCATTAGTGCGAAAGAGCGA 24
consensus_5493#1 TCAATGCAGTAACAGCAGAGGAGGAGGGATCGTCACGGGGGCACAGGGGCGAAGAAATGA 60
* *** * ***** * **
consensus_5493#0 AAGAAAGAGAGAGAGAGAGAAAGTGAAAAGTCTGAAACGGCCCTTATAA----------- 73
consensus_5493#1 CACAACAAGTAAGCATAACTAAGGGAAA--CTTCAACTTACACACATAAGGAGGAGGAGG 118
* ** ** ** * *** **** * ** * * ****
consensus_5493#0 --AAAAATCCGCATAGTACGCTAAGTAAGAGAGAATACACAACAACGTTAACTGATAAGT 131
consensus_5493#1 GAAAAAATCCGCATAGCACGCTAAGTAAGAGAGAATACACAACAACGTTAACTGATAAGT 178
************** *******************************************
consensus_5493#0 CGTTTATATACACGAATATATGTTTTATATAAAAGAAGAAAAAAAGTGAAACACGCACGC 191
consensus_5493#1 CGTTTATATACACGAATATATGTTTTATATAAAAGAAGAAAAAAAGTGAAACACGCACGC 238
************************************************************
consensus_5493#0 ACGCGAGTAAAAGAAGGAAGACAAGGTGAGAGTAGTCGGGAAGTTAGTTGAATAAGTCAT 251
consensus_5493#1 ACGCGAGTAAAAGAAGGAAGACAAGGTGAGAGTAGTCGGGAAGTTAGTTGAATAAGTCAT 298
************************************************************
consensus_5493#0 CAAAAGTTGTAAAGCAGAGTAAAGAAGAGAATGATGATTGCATGAAAAAATGAGCTAAAC 311
consensus_5493#1 CAAAAGTTGCAAAGCAGAGTAAAGAAGAGAATGATGATTGCATGAAAAAATGAGCTAAAC 358
********* **************************************************
consensus_5493#0 TGAACTGAGAAAACTAAAAAAAAAAGAAAAGAAATGTTTAGGGACAAACCCGTATCGAAA 371
consensus_5493#1 TGAACTGAGAAAAC-AAAAAAAAAAGAAAAGAAATGTTTAGGGACAAACCCGTATCGAAA 417
************** *********************************************
consensus_5493#0 TCTATACCGAAACCCTTATTCATAAAAGGCGGAACTTAAGTACAGCAAACAGCAGCAGCA 431
consensus_5493#1 TCTATACCGAAACCCTTATTCATAAAAGGCGGAACTTAAGTACAGCAAACAGCAGCAGCA 477
************************************************************
consensus_5493#0 GCAGAAGCAGCAGAAGCAGCAGCAGCAGCAATTAATATACTATTACCTACTATTGCAAAC 491
consensus_5493#1 GCAG------------CAGAAGCAGCAGCAATTAATATACTATTACCTACTATTGCAAAC 525
**** *** ****************************************
consensus_5493#0 TACTATTGCTAATTACTATTAACTATTACTACTGCTACTACAAC-TATTGCTAGAGTGTA 550
consensus_5493#1 TACTATTGCTAATTACTATTAACTATTACTACTGCTACTACAACCTATTGCTAGAGTGTA 585
******************************************** ***************
consensus_5493#0 CACTTGCCGTGAAGTGCATTTTTTGCCTGGCAGGAGTGTTGCGCATAGCATTTCCTTTTT 610
consensus_5493#1 CACTTGCCGTGAAGTGCATTTTTTGCCTGGCAGGAGTGTTGCGCATAGCATTTCCTTTTT 645
************************************************************
consensus_5493#0 CCCC-TTTTGTTTTTCGAAAGTAACCAAACAATCTGAATTATATTGATTTTATTGTCTTA 669
consensus_5493#1 CCCCCTTTTGTTTTTCGAAACTAACCAAACAATCTGAATTATATTGATTTTATTGTCTTA 705
**** *************** ***************************************
consensus_5493#0 GTTTATACCTTTTTTT-CTCCGAGAAGATCGTAAAAATTTAGCATGCATCGCATAAAAAA 728
consensus_5493#1 GTTTATACCTTTTTTTTCTCCGAGAAGATCGTAAAAATTTAGCATGCAT----------- 754
**************** ********************************
consensus_5493#0 ACCTTTCAGTTGATTTAAATACAATTTTCCCTTACAAAGTCGCTTGTGCAGATGCAGTTG 788
consensus_5493#1 ------------------------------------------------------------
consensus_5493#0 TTGTAAGAAATAGGAGAGAGAAGAGAAAAAAATCGAAACAATACACCCCAAAACCAACAC 848
consensus_5493#1 ------------------------------------------------------------
consensus_5493#0 ACCCCATTTAAATAAACAAGGAAACATTAATCAACAATCAATAGTAAATCCGGAAGGCGT 908
consensus_5493#1 ------------------------------------------------------------
consensus_5493#0 GGAGAGGATAAGTGCAACAAGATTAAAACACCACTATACAAACCGAACAAC 959
consensus_5493#1 ---------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||