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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5503#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1084 fasta sequence
[CCTACTGGGTAATATTTGATAAAATAGTAAAACAAAAGCAAACAGCCAACACAAGTATGTGTGTGTGTGTGTGCGTGTGTGTTAGTGTGTGTGCCGCGTGTAGTGAAGATTGGCAAAGGGCAGCGATTTTGATGGTTAACACATCAGGAGGATTATAAAGCGCTTTATGGATTATCCAGCACAGTCAGGCGACATTCTTCTGATAGTAACCTTTACGCATCTTTTGTTACATTACTGACCTTCCTCCTTTCTTCTTTCCACACCGCGTGCAGTGCAATTGCGTACATCCTTCCATCCCCACCTGGTTCTCTCATTCCAATGCACACTTTTGCACACACACACGCGCGCGCGCGCGGCCGATTAATTGATTCTCTGTTGCTGCGGAAACGCCAACAGTTTTTCTCTTTCTTTCGCTTCACAATGCAAAGCGCAGCATACACGCACACTCACTCACATACGGACACGGGTTTAGTGTGTTCTTCCGTACTGCGCTCCTTCATCTCTGCATCTCTCGTCTCGTTTCGATTCTCCTGCAACCCTTTTGCATAGGAGCCGGGTTGGCGTGTACTCTGTTGCCCTTGGTAACAGTGACGCACGCATCCCGGCTGCTCCAAAGCCTTCTACCACACTACTC------GGCAGATGGTGGTGGGGGTGCTAGCCTAGCAACCGACTGGTCTAGCACCTTTCCTAAACAGCT-GGCATGATTCTTTTGCTATTTTTTTTTTTCTCATTTCAAATTGTTCAAAGCATAGATGAATGTGTGTCTGTGTGTGTGTGACACTCAACACATCACCTCCCCTTTCGCGCAGAGTTAAAAATAATTTATGCAATGTGATATTTTTTTGTCGTCTGTACGTGTTAGCTAATATTAATTAATTAGTAATATGTGAGAGCATGTGAAGTGATGAAGAAGTGAATCGTAAAGGAGCGGATGATGGATTAAGATTGCATTGCGCGATGCACGACAAAGAAGATGATTGTAACAAGAAGAGGCCAAGTGTAATCTATTTTGCTGATAATAATGCTAATAATAATGATGATGAACCGTTTAAAGGTAACGTTCTGTAAAAAAAAAAAAAAAAAA]
[+] EMBL CNS091UH [CCTACTGGGTAATATTTGATAAAATAGTAAAACAAAAGCAAACAGCCAACACAAGTATGTGTGTGTGTGTGTGCGTGTGTGTTAGTGTGTGTGCCGCGTGTAGTGAAGATTGGCAAAGGGCAGCGATTTTGATGGTTAACACATCAGGAGGATTATAAAGCGCTTTATGGATTATCCAGCACAGTCAGGCGACATTCTTCTGATAGTAACCTTTACGCATCTTTTGTTACATTACTGACCTTCCTCCTTTCTTCTTTCCACACCGCGTGCAGTGCAATTGCGTACATCCTTCCATCCCCACCTGGTTCTCTCATTCCAATGCACACTTTTGCACACACACACGCGCGCGCGCGCGGCCGATTAATTGATTCTCTGTTGCTGCGGAAACGCCAACAGTTTTTCTCTTTCTTTCGCTTCACAATGCAAAGCGCAGCATACACGCACACTCACTCACATACGGACACGGGTTTAGTGTGTTCTTCCGTACTGCGCTCCTTCATCTCTGCATCTCTCGTCTCGTTTCGATTCTCCTGCAACCCTTTTGCATAGGAGCCGGGTTGGCGTGTACTCTGTTGCCCTTGGTAACAGTGACGCACGCATCCCGGCTGCTCCAAAGCCTTCTACCACACTACTC GGCAGATGGTGGTGGGGGTGCTAGCCTAGCAACCGACTGGTCTAGCACCTTTCCTAAACAGCT GGCATGATTCTTTTGCTATTTTTTTTT ]
[+] EMBL BM578187 [ ccgGTGTGTGCGTGTGTGTTAGTGTGTGTGCCGCGTGTAGTGAAGATTGGCAAAGGACAGCGATTTTGATGGTTAACACATCAGGAGGATTATAAAGCGCTTTATGGATTATCCAGCACAGTCAGGCGACATTCTTCTGATAGTAACCTTTACGCATCTTTTGTTACATTACTGACCTTCCTCCTTTCTTCTTTCCACACCGCGTGCAGTGCAATTGCGTACATCCTTCCATCCCCACCTGGTTCTCTCATTCCAATGCACACTTTTGCACACACACACGCGCGCGCGCGCGGCCGATTAATTGATTCTCTGTTGCTGCGGAAACGCCAACAGTTTTTCTCTTTCTTTCGCTTCACAATGCAAAGCGCAGCATACACGCACACTCACTCACATACGGACACGGGTTTAGTGTGTTCTTCCGTACTGCGCTCCTTCATCTCTGCATCTCTCGTCTCGTTTCGATTCTCCTGCAACCCTTTTGCATAGGAGCCGGGTTGGCGTGTACTCTGTTGCCCTTGGTAACAGTGACGCACGCATCCCGGCTGCTCCAAAGCCTTCTACCACACTACTCGAAAAAGGGGGGGGGGGGGGGGGGGGCTAACCTAGCAACCGACTGGTCTAGCACCTTTCCTAAACAGCTGGGCATGATT ]
[-] EMBL CNS091UI [ CTGCGGAAACGCCAACAGTTTTTCTCTTTCTTTCGCTTCACAATGCAAAGCGCAGCATACACGCACACTCACTCACATACGGACACGGGTTTAGTGTGTTCTTCCGTACTGCGCTCCTTCATCTCTGCATCTCTCGTCTCGTTTCGATTCTCCTGCAACCCTTTTGCATAGGAGCCGGGTTGGCGTGTACTCTGTTGCCCTTGGTAACAGTGACGCACGCATCCCGGCTGCTCCAAAGCCTTCTACCACACTACTC GGCAGATGGTGGT GGGGTGCTAGCCTAGCAACCGACTGGTCTAGCACCTTTCCTAAACAGCT GGCATGATTCTTTTGCTATTTTTTTTTTTCTCATTTCAAATTGTTCAAAGCATAGATGAATGTGTGTCTGTGTGTGTGTGACACTCAACACATCACCTCCCCTTTCGCGCAGAGTTAAAAATAATTTATGCAATGTGATATTTTTTTGTCGTCTGTACGTGTTAGCTAATATTAATTAATTAGTAATATGTGAGAGCATGTGAAGTGATGAAGAAGTGAATCGTAAAGGAGCGGATGATGGATTAAGATTGCATTGCGCGATGCACGACAAAGAAGATGATTGTAACAAGAAGAGGCCAAGTGTAATCTATTTTGCTGATAATAATGCTAATAATAATGATGATGAACCGTTTAAAGGTAACGTTCTGTAAAAAAAAAAAAAAAAAA]
consensusID : consensus_5503#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 206 fasta sequence
[CCGGCAGCAGGATGTTTGGTTATCGTGCGTGCATGCGGCGTGGTATGCGTGTGTGCGGATCAAACCGGAGCGCAGGAAGAACGCGGATGATGGATTAAGATTGCATTGCGCGATGCACGACAAAGAAGATGATTGTAACAAGAAGAGGCCAAGTGTAATCTATTTTGCTGATAATAATGCTAATAATAATGATGATGAACCTGTTT]
[+] EMBL BM583544 [CCGGCAGCAGGATGTTTGGTTATCGTGCGTGCATGCGGCGTGGTATGCGTGTGTGCGGATCAAACCGGAGCGCAGGAAGAACGCGGATGATGGATTAAGATTGCATTGCGCGATGCACGACAAAGAAGATGATTGTAACAAGAAGAGGCCAAGTGTAATCTATTTTGCTGATAATAATGCTAATAATAATGATGATGAACCTGTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5503#0 CCTACTGGGTAATATTTGATAAAATAGTAAAACAAAAGCAAACAGCCAACACAAGTATGT 60
consensus_5503#1 ------------------------------------------------------------
consensus_5503#0 GTGTGTGTGTGTGCGTGTGTGTTAGTGTGTGTGCCGCGTGTAGTGAAGATTGGCAAAGGG 120
consensus_5503#1 ------------------------------------------------------------
consensus_5503#0 CAGCGATTTTGATGGTTAACACATCAGGAGGATTATAAAGCGCTTTATGGATTATCCAGC 180
consensus_5503#1 ------------------------------------------------------------
consensus_5503#0 ACAGTCAGGCGACATTCTTCTGATAGTAACCTTTACGCATCTTTTGTTACATTACTGACC 240
consensus_5503#1 ------------------------------------------------------------
consensus_5503#0 TTCCTCCTTTCTTCTTTCCACACCGCGTGCAGTGCAATTGCGTACATCCTTCCATCCCCA 300
consensus_5503#1 ------------------------------------------------------------
consensus_5503#0 CCTGGTTCTCTCATTCCAATGCACACTTTTGCACACACACACGCGCGCGCGCGCGGCCGA 360
consensus_5503#1 ------------------------------------------------------------
consensus_5503#0 TTAATTGATTCTCTGTTGCTGCGGAAACGCCAACAGTTTTTCTCTTTCTTTCGCTTCACA 420
consensus_5503#1 ------------------------------------------------------------
consensus_5503#0 ATGCAAAGCGCAGCATACACGCACACTCACTCACATACGGACACGGGTTTAGTGTGTTCT 480
consensus_5503#1 ------------------------------------------------------------
consensus_5503#0 TCCGTACTGCGCTCCTTCATCTCTGCATCTCTCGTCTCGTTTCGATTCTCCTGCAACCCT 540
consensus_5503#1 ------------------------------------------------------------
consensus_5503#0 TTTGCATAGGAGCCGGGTTGGCGTGTACTCTGTTGCCCTTGGTAACAGTGACGCACGCAT 600
consensus_5503#1 ------------------------------------------------------------
consensus_5503#0 CCCGGCTGCTCCAAAGCCTTCTACCACACTACTCGGCAGATGGTGGTGGGGGTGCTAGCC 660
consensus_5503#1 ------------------------------------------------------------
consensus_5503#0 TAGCAACCGACTGGTCTAGCACCTTTCCTAAACAGCTGGCATGATTCTTTTGCTATTTTT 720
consensus_5503#1 ------------------------------------------------------------
consensus_5503#0 TTTTTTCTCATTTCAAATTGTTCAAAGCATAGATGAATGTGTGTCTGTGTGTGTGTGACA 780
consensus_5503#1 ------------------------------------------------------------
consensus_5503#0 CTCAACACATCACCTCCCCTTTCGCGCAGAGTTAAAAATAATTTATGCAATGTGATATTT 840
consensus_5503#1 -------------------------------------------CCGGCAGCAGGATGTTT 17
*** *** ***
consensus_5503#0 TTTTGTCGTCTGTACGTGTTAGCTAATATTAATTAATTAGTAATATGTGAGAGCATGTGA 900
consensus_5503#1 GGTTATCGTGCGTGCATGCGGCGTGGTAT---------------GCGTGTGTGCGGATCA 62
** **** ** * ** * *** *** * ** * *
consensus_5503#0 AGTGATGAAGAAGTGAATCGTAAAGGAGCGGATGATGGATTAAGATTGCATTGCGCGATG 960
consensus_5503#1 AACC-----GGAGCGCA--GGAAGAACGCGGATGATGGATTAAGATTGCATTGCGCGATG 115
* * ** * * * ** *********************************
consensus_5503#0 CACGACAAAGAAGATGATTGTAACAAGAAGAGGCCAAGTGTAATCTATTTTGCTGATAAT 1020
consensus_5503#1 CACGACAAAGAAGATGATTGTAACAAGAAGAGGCCAAGTGTAATCTATTTTGCTGATAAT 175
************************************************************
consensus_5503#0 AATGCTAATAATAATGATGATGAACC-GTTTAAAGGTAACGTTCTGTAAAAAAAAAAAAA 1079
consensus_5503#1 AATGCTAATAATAATGATGATGAACCTGTTT----------------------------- 206
************************** ****
consensus_5503#0 AAAAA 1084
consensus_5503#1 -----
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||