cluster # 5504

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 5504 cluster # 5504 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5504#0 length = 935 sequences # 3

consensus_5504#1 length = 665 sequences # 1

consensusID : consensus_5504#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 935
fasta sequence

                              [TCCAGTGCTACACGTTTTCGCGGCAAAGAAAAGTGCGCGTTAGAAATTAATTGCGAAGCAATCATCTGTCTAAGTTGTGTTCCGGTGTTGTTGAGTGAGCAAACACGAACAAACAAAAAGCATAGTCCCGTGCGGTCCCTTTGCGCGATGAGAAAATGGCTCCCTGCTCGACCACCGATCATCAGCACCAAGCAACCGGCCAGCAATCAGAGCAGGCGATGGAGGGTGCCGTCATCTTGGACGGCAGCGCCCAGCCGCCATTGAGCGCGCTTCTGCCGGTTCAATGTGCCGGCAACCGCAGCCATCGCTACAAGTGCGACCACTGCGAGCAAACGTTCAAGCGACGCGAGCGAGCACGATCGGCACCGCTACACGCACACCGGAGTGCACGCCTACCCCTGCCTGGAGCCTGTGACTGCGGCAAAGCCTACTCGAACCGGTCCCATCTGCTGCGGCACGTGCGGGCCTGCCATCTGGAGAGTGCCGGTACCGCCCGGCCCGAGGTCGACTGCAGCCATCCGAACTGTGCGATGAAGTTCACCAGCCGGCAGGCGATGAAGCGCCACTACCAGACGAAGCACGTGCTGGGCAAACCGTACGCGTGCGACGCGTGCGGCGAGCGGTTCTGGCGCAAGCTGCAGCTGAAGCTGCACAAGGTGCGCCACACCGGCGAGTATCCGCACCGGTGCGAGCACTGCGGCCAGGGGTTCGTGAACGCGCGCACGATGCGGAGCCACCGGTGCCGGCAGAACGCGCACCGCTGCCCGGACTGTGCGCGCGAGTTCCTGCGCTGGTCCGAGCTGGTGGTGCACCGGCGGCTCGAGCATCCGACCCAGTACCGGTGCGACCAGTGCGACAAGCAGTTCAGCACGAAGCGCAACCTGAACCTGCACGGCCGGGTCCATCGCAAGCAGCAGGACGCTGCCGCCGGCAAG]

[+] EMBL CNS09DD7             [TCCAGTGCTACACGTTTTCGCGGCAAAGAAAAGTGCGCGTTAGAAATTAATTGCGAAGCAATCATCTGTCTAAGTTGTGTTCCGGTGTTGTTGAGTGAGCAAACACGAACAAACAAAAAGCATAGTCCCGTGCGGTCCCTTTGCGCGATGAGAAAATGGCTCCCTGCTCGACCACCGATCATCAGCACCAAGCAACCGGCCAGCAATCAGAGCAGGCGATGGAGGGTGCCGTCATCTTGGACGGCAGCGCCCAGCCGCCATTGAGCGCGCTTCTGCCGGTTCAATGTGCCGGCAACCGCAGCCATCGCTACAAGTGCGACCACTGCGAGCAAACGTTCAAGCGACGCGAGCGAGCACGATCGGCACCGCTACACGCACACCGGAGTGCACGCCTACCCCTGCCTGGAGCCTGTGACTGCGGCAAAGCCTACTCGAACCGGTCCCATCTGCTGCGGCACGTGCGGGCCTGCCATCTGGAGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL BM597322             [                                                                                                                                                                                                                                                                                                CCGGCAACCGCAGCCATCGCTACAAGTGCGACCACTGCGAGCAAACGTTCAAGCGACGCGA CGAGCACGATCGGCACCGCTACACGCACACCGGAGTGCACGCCTACCCCTGCCTGGAGCC G GACTGCGGCAAAGCCTACTCGAACCGGTCCCATCTGCTGCGGCACGTGCGGGCCTGCCATCTGGAGAGTGCCGGTACCGCCCGGCCCGAGGTCGACTGCAGCCATCCGAACTGTGCGATGAAGTTCACCAGCCGGCAGGCGATGAAGCGCCACTACCAGACGAAGCACGTGCTGGGCAAACCGTACGCGTGCGACGCGTGCGGCGAGCGGTTCTGGCGCAAGCTGCAGCTGAAGCTGCACAAGGTGCGCCACACCGGCGAGTATCCGCACCGGTGCGAGCACTGCGGCCAGGGGTTCGTGAACGCGCGCACGATGCGGAGCCACCGGTGCCGGCAGAACGCGCACCGCTGCCCGGACTGTGCGCGCGAGTTCCTGCGCTGGTCCGAGCTGGTGGTGCACCGGCGGCTCGAGCATCCGACCCAGTACCGGTGCGACCAGTGCGACAAGCAGTTCAGCACGAAGCGCAACCTGAACCTGCACGGCCGGGTCCATCGCAAGCAGCAGGACGCTGCCGCCGGCAAG]
[-] EMBL CNS09DD8             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GGCCCGAGGTCAACTGCAGCCATCCGAACTGTGCGATGAAGTTCACCAGCCGGCAGGCGTTGAAGCGCCACTACCAGACGAAGCACGTGCTGGGCAAACCGTACGCGTGC                                                                                                                                                                                                                                                                                                                                          ]




>consensus_5504#0
TCCAGTGCTACACGTTTTCGCGGCAAAGAAAAGTGCGCGTTAGAAATTAATTGCGAAGCA
ATCATCTGTCTAAGTTGTGTTCCGGTGTTGTTGAGTGAGCAAACACGAACAAACAAAAAG
CATAGTCCCGTGCGGTCCCTTTGCGCGATGAGAAAATGGCTCCCTGCTCGACCACCGATC
ATCAGCACCAAGCAACCGGCCAGCAATCAGAGCAGGCGATGGAGGGTGCCGTCATCTTGG
ACGGCAGCGCCCAGCCGCCATTGAGCGCGCTTCTGCCGGTTCAATGTGCCGGCAACCGCA
GCCATCGCTACAAGTGCGACCACTGCGAGCAAACGTTCAAGCGACGCGAGCGAGCACGAT
CGGCACCGCTACACGCACACCGGAGTGCACGCCTACCCCTGCCTGGAGCCTGTGACTGCG
GCAAAGCCTACTCGAACCGGTCCCATCTGCTGCGGCACGTGCGGGCCTGCCATCTGGAGA
GTGCCGGTACCGCCCGGCCCGAGGTCGACTGCAGCCATCCGAACTGTGCGATGAAGTTCA
CCAGCCGGCAGGCGATGAAGCGCCACTACCAGACGAAGCACGTGCTGGGCAAACCGTACG
CGTGCGACGCGTGCGGCGAGCGGTTCTGGCGCAAGCTGCAGCTGAAGCTGCACAAGGTGC
GCCACACCGGCGAGTATCCGCACCGGTGCGAGCACTGCGGCCAGGGGTTCGTGAACGCGC
GCACGATGCGGAGCCACCGGTGCCGGCAGAACGCGCACCGCTGCCCGGACTGTGCGCGCG
AGTTCCTGCGCTGGTCCGAGCTGGTGGTGCACCGGCGGCTCGAGCATCCGACCCAGTACC
GGTGCGACCAGTGCGACAAGCAGTTCAGCACGAAGCGCAACCTGAACCTGCACGGCCGGG
TCCATCGCAAGCAGCAGGACGCTGCCGCCGGCAAG

consensusID : consensus_5504#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 665
fasta sequence

                              [CCGGTGTTGTTTGTTGATGTATTTGTAGTTTCCGCAATACATTTTCCAGTGCTACACGTTTTCGCGGCAAAGAAAAGTGCGCGTTAGAAATTAATTGCGAAGCGCATCATCTGTCTAAGTTGTGTTCCGGTGTTGTTGAGTGAGCAAACACGAACAAACAATAAGCGTAGTCCCGTGCGGTCCCTTTGCGCGATGAGAAAATGGCTCCCTGCTCGACCACCGATCATCAGCACCAAGCAACCGGCCAGCAATCAGAGCAGGCGATGGAGGGTGCCGTCATCTTGGACGGCAGCGCCCAGCCGCCATTGAGCGCGCTGCTGCCGGTTCAATGTGCCGGCAACCGCAGCCATCGCTACAAGTGCGACCACTGCGAGCAAACGTTCAAGCGACGCGACGAGCACGATCGGCACCGCTACACGCACACCGGAGTGGTAAGTGGCACTGGAACGGGAAATGGGAAGGCGGCAAACCACACACACACACACACACACACACACACACGTTTTGGTTTTTGCTTGCAGCACGCCTACCCCTGCCTGGAGCCGGACTGCGGCAAAGCCTACTCGAACCGGTCCCATCTGCTGCGGCACGTGCGGGCCTGCCATCTGGAGAGTGCCGGTACCGCCCGGCCCCGAGGTCGACTGCAGCCATCCGAACTGTGCGAT]

[+] EMBL BM578196             [CCGGTGTTGTTTGTTGATGTATTTGTAGTTTCCGCAATACATTTTCCAGTGCTACACGTTTTCGCGGCAAAGAAAAGTGCGCGTTAGAAATTAATTGCGAAGCGCATCATCTGTCTAAGTTGTGTTCCGGTGTTGTTGAGTGAGCAAACACGAACAAACAATAAGCGTAGTCCCGTGCGGTCCCTTTGCGCGATGAGAAAATGGCTCCCTGCTCGACCACCGATCATCAGCACCAAGCAACCGGCCAGCAATCAGAGCAGGCGATGGAGGGTGCCGTCATCTTGGACGGCAGCGCCCAGCCGCCATTGAGCGCGCTGCTGCCGGTTCAATGTGCCGGCAACCGCAGCCATCGCTACAAGTGCGACCACTGCGAGCAAACGTTCAAGCGACGCGACGAGCACGATCGGCACCGCTACACGCACACCGGAGTGGTAAGTGGCACTGGAACGGGAAATGGGAAGGCGGCAAACCACACACACACACACACACACACACACACACGTTTTGGTTTTTGCTTGCAGCACGCCTACCCCTGCCTGGAGCCGGACTGCGGCAAAGCCTACTCGAACCGGTCCCATCTGCTGCGGCACGTGCGGGCCTGCCATCTGGAGAGTGCCGGTACCGCCCGGCCCCGAGGTCGACTGCAGCCATCCGAACTGTGCGAT]




>consensus_5504#1
CCGGTGTTGTTTGTTGATGTATTTGTAGTTTCCGCAATACATTTTCCAGTGCTACACGTT
TTCGCGGCAAAGAAAAGTGCGCGTTAGAAATTAATTGCGAAGCGCATCATCTGTCTAAGT
TGTGTTCCGGTGTTGTTGAGTGAGCAAACACGAACAAACAATAAGCGTAGTCCCGTGCGG
TCCCTTTGCGCGATGAGAAAATGGCTCCCTGCTCGACCACCGATCATCAGCACCAAGCAA
CCGGCCAGCAATCAGAGCAGGCGATGGAGGGTGCCGTCATCTTGGACGGCAGCGCCCAGC
CGCCATTGAGCGCGCTGCTGCCGGTTCAATGTGCCGGCAACCGCAGCCATCGCTACAAGT
GCGACCACTGCGAGCAAACGTTCAAGCGACGCGACGAGCACGATCGGCACCGCTACACGC
ACACCGGAGTGGTAAGTGGCACTGGAACGGGAAATGGGAAGGCGGCAAACCACACACACA
CACACACACACACACACACACGTTTTGGTTTTTGCTTGCAGCACGCCTACCCCTGCCTGG
AGCCGGACTGCGGCAAAGCCTACTCGAACCGGTCCCATCTGCTGCGGCACGTGCGGGCCT
GCCATCTGGAGAGTGCCGGTACCGCCCGGCCCCGAGGTCGACTGCAGCCATCCGAACTGT
GCGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5504#0      --------------------------------------------TCCAGTGCTACACGTT 16
consensus_5504#1      CCGGTGTTGTTTGTTGATGTATTTGTAGTTTCCGCAATACATTTTCCAGTGCTACACGTT 60
                                                                  ****************

consensus_5504#0      TTCGCGGCAAAGAAAAGTGCGCGTTAGAAATTAATTGCGAAGCA-ATCATCTGTCTAAGT 75
consensus_5504#1      TTCGCGGCAAAGAAAAGTGCGCGTTAGAAATTAATTGCGAAGCGCATCATCTGTCTAAGT 120
                      *******************************************  ***************

consensus_5504#0      TGTGTTCCGGTGTTGTTGAGTGAGCAAACACGAACAAACAAAAAGCATAGTCCCGTGCGG 135
consensus_5504#1      TGTGTTCCGGTGTTGTTGAGTGAGCAAACACGAACAAACAATAAGCGTAGTCCCGTGCGG 180
                      ***************************************** **** *************

consensus_5504#0      TCCCTTTGCGCGATGAGAAAATGGCTCCCTGCTCGACCACCGATCATCAGCACCAAGCAA 195
consensus_5504#1      TCCCTTTGCGCGATGAGAAAATGGCTCCCTGCTCGACCACCGATCATCAGCACCAAGCAA 240
                      ************************************************************

consensus_5504#0      CCGGCCAGCAATCAGAGCAGGCGATGGAGGGTGCCGTCATCTTGGACGGCAGCGCCCAGC 255
consensus_5504#1      CCGGCCAGCAATCAGAGCAGGCGATGGAGGGTGCCGTCATCTTGGACGGCAGCGCCCAGC 300
                      ************************************************************

consensus_5504#0      CGCCATTGAGCGCGCTTCTGCCGGTTCAATGTGCCGGCAACCGCAGCCATCGCTACAAGT 315
consensus_5504#1      CGCCATTGAGCGCGCTGCTGCCGGTTCAATGTGCCGGCAACCGCAGCCATCGCTACAAGT 360
                      **************** *******************************************

consensus_5504#0      GCGACCACTGCGAGCAAACGTTCAAGCGACGCGAGCGAGCACGATCGGCACCGCTACACG 375
consensus_5504#1      GCGACCACTGCGAGCAAACGTTCAAGCGACGCGA-CGAGCACGATCGGCACCGCTACACG 419
                      ********************************** *************************

consensus_5504#0      CACACCGGAGTGCACGCCTACCCCTGCCTGGAGCCTGTGACTGCGGCAAAGCCTACTCGA 435
consensus_5504#1      CACACCGGAGTGGTAAGTGGCACTGGAACGGGAAATGGGAAGGCGGCAAACCACACACAC 479
                      ************        * *  *   **    ** **  ******** *  ** *  

consensus_5504#0      ACCGGTCCCATCTGCTGCGGCACGTGCGGGCCTGCCATCTGGAGAGTGCCGGTACCGCCC 495
consensus_5504#1      ACACA-CACACACACACACACACGTTTTGGTTT-TTGCTTGCAGCACGCC--TACC-CCT 534
                      **    * **    *     *****   **  *      ** **   ***  **** ** 

consensus_5504#0      GGCCCGAGGTCGACTGCAGCCATCCGAACTGTGCGATGAAGTTCACCAGCCGGCAGGCGA 555
consensus_5504#1      GCCTGGAGCCGGACTGCGGCAAAGCCTACT---CGAACCGGTCCCATCTGCTGCGGCACG 591
                      * *  ***   ****** ** *  *  ***   ***    ** *      * ** *    

consensus_5504#0      TGAAGCGCCACTACCAGACGAAGCACGTGCTGGGCAAACCGTACGCGTGCGACGCGTGCG 615
consensus_5504#1      TGCGGGCCTGCCATCTGGAGA-----GTGCCGGTACCGCCCGGCCCCGAGGTCGACTGCA 646
                      **  *  *  * * * *  **     **** **     **   * *    * **  *** 

consensus_5504#0      GCGAGCGGTTCTGGCGCAAGCTGCAGCTGAAGCTGCACAAGGTGCGCCACACCGGCGAGT 675
consensus_5504#1      GCCATCCGAACTG-TGCGAT---------------------------------------- 665
                      ** * * *  ***  ** *                                         

consensus_5504#0      ATCCGCACCGGTGCGAGCACTGCGGCCAGGGGTTCGTGAACGCGCGCACGATGCGGAGCC 735
consensus_5504#1      ------------------------------------------------------------
                                                                                  

consensus_5504#0      ACCGGTGCCGGCAGAACGCGCACCGCTGCCCGGACTGTGCGCGCGAGTTCCTGCGCTGGT 795
consensus_5504#1      ------------------------------------------------------------
                                                                                  

consensus_5504#0      CCGAGCTGGTGGTGCACCGGCGGCTCGAGCATCCGACCCAGTACCGGTGCGACCAGTGCG 855
consensus_5504#1      ------------------------------------------------------------
                                                                                  

consensus_5504#0      ACAAGCAGTTCAGCACGAAGCGCAACCTGAACCTGCACGGCCGGGTCCATCGCAAGCAGC 915
consensus_5504#1      ------------------------------------------------------------
                                                                                  

consensus_5504#0      AGGACGCTGCCGCCGGCAAG 935
consensus_5504#1      --------------------