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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5506#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 669 fasta sequence
[CCGTGTTGTTACGCTCCTTTTCCTAGCTAAACGTAGGTAAAAAGCATTTTCCTGTCGATTTATTGCCGTTTTGTGTCTCTAGTTTGAGTAAGTGTTCTTAGCTATGGATGACGAGCTGCTAAAAACGTGCCAAAGGGAGATAGGGCACATTGTGTTCGATGCCAACGAGAAGATTTCTACCCGTCGGATCAGTAACACGTGGAGCTTGGACAGCAAAAAATCGCTGGAAGTGCTGCAGAAATGGGTTGATGGGCAGAAAGAGCCGAACAAACTCTCGAAAGAGTACGTCGTGAGGGGCGTCGATAAAAATGGCAACGTTTTCATCACTCTAGCGAATGAGGAAAAGCTGGAAAAAATCAGCAAAACCTACCCCAAGTGCTCGAAAATGCTTTACTCCGTCGAGGTTGCGTCCGACGTTCGACCGCTGAACGTATCCAACGACAACGAGTTCAGTGTGATCCGTTTACGGTTGGAATCGCAAAAGCGTCAAATAGAACAAGCATCTTCTTCCACCGCCCCACAAACAACGCCGAAACCGGCACCCGCGCCCGTCAAACAGGAGCAGAAACCCTCGAAACCGAGCATGTTTGCGGCGGCCAGCAAGCAACAACCCCCGGTAAAGGAGGAAAAACAATCACCACCCGCAAAGCCACAGGTAAAACCGGAACC]
[+] EMBL BM584023 [CCGTGTTGTTACGCTCCTTTTCCTAGCTAAACGTAGGTAAAAAGCATTTTCCTGTCGATTTATTGCCGTTTTGTGTCTCTAGTTTGAGTAAGTGTTCTTAGCTATGGATGACGAGCTGCTAAAAACGTGCCAAAGGGAGATAGGGCACATTGTGTTCGATGCCAACGAGAAGATTTCTACCCGTCGGATCAGTAACACGTGGAGCTTGGACAGCAAAAAATCGCTGGAAGTGCTGCAGAAATGGGTTGATGGGCAGAAAGAGCCGAACAAACTCTCGAAAGAGTACGTCGTGAGGGGCGTCGATAAAAATGGCAACGTTTTCATCACTCTAGCGAATGAGGAAAAGCTGGAAAAAATCAGCAAAACCTACCCCAAGTGCTCGAAAATGCTTTACTCCGTCGAGGTTGCGTCCGACGTTCGACCGCTGAACGTATCCAACGACAACGAGTTCAGTGTGATCCGTTTACGGTTGGAATCGCAAAAGCGTCAAATAGAACAAGCATCTTCTTCCACCGCCCCACAAACAACGCCGAAACCGGCACCCGCGCCCGTCAAACAGGAGCAGAAACCCTCGAAACCGAGCATGTTTGCGGCGGCCAGCAAGCAACAACCCCCGGTAAAGGAGGAAAAACAATCACCACCCGCAAAGCCACAGGTAAAACCGGAACC]
[+] EMBL BM578481 [ CACGTGGAGCTTGGACAGCAAATAATCGCTGGAAGTGCTGCAGAAATGGGTTGATGGGCAGAAAGAGCCGAACAAACTCTCGAAAGAGTACGTCGTGAGGGGCATCGATAAGAATGGCAACGTTTTCGTCACTCTAGCAAATGAGGAAAAGTTAGAAGAAATCAGCAAAACCTAC ]
consensusID : consensus_5506#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 579 fasta sequence
[CCGCCCACGCGTCCGGCTAAACGTTGGTGGAAAAGCATTTTCCTGTCGATTTATTACCGTTTTCTGTGTCTCTAGTTTGAGTTGGTGTCCTTAGCTATGGATGACGAGCTGCTAAAAACGTGCCAAAGGGAGATAGGGCACATTGTGTTCGATGCCAACGAGAAGATTTCTACCCGTCGGATCAGTAACACGTGGAGCTTGGACAGCAAAAAATCGCTGGAAGTGCTGCAGAAATGGGTTGAAGGGCAGAAAGAGCCGAACAAACTCTCGAAAGAGTACGTCGTGAGGGGCGTCGATAAAAATGGCAACGTTTTCATCACTCTAGCGAATGAGGAAAAGCTGGAAAAAATCAGCAAAACCTACCCCAAGTGCTCGAAAATGCTTTACTCCGTCGAGGTTGCGTCCGACGTGCGACCGCTGAACGTGTCCAACGACAACGAGTTCAATGTGATCCGTTTACGGTTGGAATCGCAAAAGCGTCAAATAGAACAAGCATCTTCTACAACCGCCCCACAAACAACGCCGAAACCGGCTCCCGCGCCCGTCAAACAGGAGCAGAAACCCTCGAAACCGAGCATG]
[+] EMBL BM647154 [CCGCCCACGCGTCCGGCTAAACGTTGGTGGAAAAGCATTTTCCTGTCGATTTATTACCGTTTTCTGTGTCTCTAGTTTGAGTTGGTGTCCTTAGCTATGGATGACGAGCTGCTAAAAACGTGCCAAAGGGAGATAGGGCACATTGTGTTCGATGCCAACGAGAAGATTTCTACCCGTCGGATCAGTAACACGTGGAGCTTGGACAGCAAAAAATCGCTGGAAGTGCTGCAGAAATGGGTTGAAGGGCAGAAAGAGCCGAACAAACTCTCGAAAGAGTACGTCGTGAGGGGCGTCGATAAAAATGGCAACGTTTTCATCACTCTAGCGAATGAGGAAAAGCTGGAAAAAATCAGCAAAACCTACCCCAAGTGCTCGAAAATGCTTTACTCCGTCGAGGTTGCGTCCGACGTGCGACCGCTGAACGTGTCCAACGACAACGAGTTCAATGTGATCCGTTTACGGTTGGAATCGCAAAAGCGTCAAATAGAACAAGCATCTTCTACAACCGCCCCACAAACAACGCCGAAACCGGCTCCCGCGCCCGTCAAACAGGAGCAGAAACCCTCGAAACCGAGCATG]
[+] EMBL CNS0942N [ ATGGATGACGAGCTGCTAAAAACGTGCCAAAGGGAGATCGGGCACATTGTGTTCGATGCCAACGAGAAGATTTCTACCCGTCGGATCAGTAACACGTGGAGCTTGGACAGCAAAAAATCGCTGGAAGTGCTGCAGAAATGGGTTGAAGGGCAGAAAGAGCCGAACAAAC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5506#0 CCGTGTTGTTACGCTCCTTTTCCTAGCTAAACGTAGGTA-AAAAGCATTTTCCTGTCGAT 59
consensus_5506#1 ----------CCGCCCACGCGTCCGGCTAAACGTTGGTGGAAAAGCATTTTCCTGTCGAT 50
*** * * ********* *** ********************
consensus_5506#0 TTATTGCCGTTTT--GTGTCTCTAGTTTGAGTAAGTGTTCTTAGCTATGGATGACGAGCT 117
consensus_5506#1 TTATTACCGTTTTCTGTGTCTCTAGTTTGAGTTGGTGTCCTTAGCTATGGATGACGAGCT 110
***** ******* ***************** **** *********************
consensus_5506#0 GCTAAAAACGTGCCAAAGGGAGATAGGGCACATTGTGTTCGATGCCAACGAGAAGATTTC 177
consensus_5506#1 GCTAAAAACGTGCCAAAGGGAGATAGGGCACATTGTGTTCGATGCCAACGAGAAGATTTC 170
************************************************************
consensus_5506#0 TACCCGTCGGATCAGTAACACGTGGAGCTTGGACAGCAAAAAATCGCTGGAAGTGCTGCA 237
consensus_5506#1 TACCCGTCGGATCAGTAACACGTGGAGCTTGGACAGCAAAAAATCGCTGGAAGTGCTGCA 230
************************************************************
consensus_5506#0 GAAATGGGTTGATGGGCAGAAAGAGCCGAACAAACTCTCGAAAGAGTACGTCGTGAGGGG 297
consensus_5506#1 GAAATGGGTTGAAGGGCAGAAAGAGCCGAACAAACTCTCGAAAGAGTACGTCGTGAGGGG 290
************ ***********************************************
consensus_5506#0 CGTCGATAAAAATGGCAACGTTTTCATCACTCTAGCGAATGAGGAAAAGCTGGAAAAAAT 357
consensus_5506#1 CGTCGATAAAAATGGCAACGTTTTCATCACTCTAGCGAATGAGGAAAAGCTGGAAAAAAT 350
************************************************************
consensus_5506#0 CAGCAAAACCTACCCCAAGTGCTCGAAAATGCTTTACTCCGTCGAGGTTGCGTCCGACGT 417
consensus_5506#1 CAGCAAAACCTACCCCAAGTGCTCGAAAATGCTTTACTCCGTCGAGGTTGCGTCCGACGT 410
************************************************************
consensus_5506#0 TCGACCGCTGAACGTATCCAACGACAACGAGTTCAGTGTGATCCGTTTACGGTTGGAATC 477
consensus_5506#1 GCGACCGCTGAACGTGTCCAACGACAACGAGTTCAATGTGATCCGTTTACGGTTGGAATC 470
************** ******************* ************************
consensus_5506#0 GCAAAAGCGTCAAATAGAACAAGCATCTTCTTCCACCGCCCCACAAACAACGCCGAAACC 537
consensus_5506#1 GCAAAAGCGTCAAATAGAACAAGCATCTTCTACAACCGCCCCACAAACAACGCCGAAACC 530
******************************* * **************************
consensus_5506#0 GGCACCCGCGCCCGTCAAACAGGAGCAGAAACCCTCGAAACCGAGCATGTTTGCGGCGGC 597
consensus_5506#1 GGCTCCCGCGCCCGTCAAACAGGAGCAGAAACCCTCGAAACCGAGCATG----------- 579
*** *********************************************
consensus_5506#0 CAGCAAGCAACAACCCCCGGTAAAGGAGGAAAAACAATCACCACCCGCAAAGCCACAGGT 657
consensus_5506#1 ------------------------------------------------------------
consensus_5506#0 AAAACCGGAACC 669
consensus_5506#1 ------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||