These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5523#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1216 fasta sequence [CCGCCCTGACATTGCCGGGGAGCTCGATCTCTGGTCTTTGGTGATGCGGATCTTTCACTTGTTTACTTTCGTATTGATGTACCATGTGTGTATGACGAATGTAAGAATACTGTGCATGTTCTGTGTGTGTGTGTGTGTGTGTACGTGACTGTATGTGTACAGAGTGTGTACTTGAAAGATGTGAGCTTTACGTTCCATATACGCAATCACCTGCGCAACACTCACATCGGGCATAGGAAAAACATAAGTTATGGCGTCACCATAGATGAGCATCGATGTTTTAGATATGTATCTGTCCAGTAAAGCGTCCTGCAAGCAAGATGAATGTCTATGTGCTCTCGAAAGGATGTCGGGTGCCGCTGAGGACAAAACTGGGCGAAGGCTATAGCACCAGCTCCTAGTTAATCTGTTTAGAAATCCTGTGTTGCAAATGTCCGCACAACCACGTCCTACTTCTTTCTTTCTGTCCAACTACGCGGAGCATGGTTCACTTCCAGCTCCAGCTATGTTTAGTCTGTTGAAACGAGGAACCAAATTCGAAACCCCTAACTCAATACCAACTTCTGAAACACACAAACACACACACAAACACACACTCTCCTACGGAATACGATCTTATATTGCTAACGATCCATCAATTCTCTGAGACAATAGTTAATCTTTAAACGCTAACAAAACAAAAGGAAAGTATTATCTGATCGTGAAATAAACCTTTTTGACAACATTGATGAAGTTGGCTGATTGTGCTGACAACGGGAAGATGTATCAAAATTGCTCTACACAAACATGCTGATACAACATTGTAAAACCAAATTGTTTCCCTAACGCCACCGAAAGTCCGAGGGAAATATATAAAGCTCTAAGCTATGTTTTACAAACGATAGAAAAGAGAACAACATTCAAAAGTTGAAAACAACACACAAGAAAACATACTAAATACACAAACAAACAGTTCACAATTTCAGGCAATGGCATAGAGGAAAGAAAGCAAACTCAAAGAAGAAACCTTAAACTAAACGAACCAACACACAAAACTTGACTATATCACCCATTTATTCCCACATATCGGAACACAAGATTACAGGACGTATTAAACAAAAAAAACGAAAAGAGAGAAGCGAGAAGGAAACTAAACCATCAACGTCAACGTATATATATCAATAGCAGGAGAGTGCATCAACTGGATATCATTCACGGTCGACATATCCCAATGTCA] [+] EMBL BM579761 [CCGCCCTGACATTGCCGGGGAGCTCGATCTCTGGTCTTTGGTGATGCGGATCTTTCACTTGTTTACTTTCGTATTGATGTACCATGTGTGTATGACGAATGTAAGAATACTGTGCATGTTCTGTGTGTGTGTGTGTGTGTGTACGTGACTGTATGTGTACAGAGTGTGTACTTGAAAGATGTGAGCTTTACGTTCCATATACGCAATCACCTGCGCAACACTCACATCGGGCATAGGAAAAACATAAGTTATGGCGTCACCATAGATGAGCATCGATGTTTTAGATATGTATCTGTCCAGTAAAGCGTCCTGCAAGCAAGATGAATGTCTATGTGCTCTCGAAAGGATGTCGGGTGCCGCTGAGGACAAAACTGGGCGAAGGCTATAGCACCAGCTCCTAGTTAATCTGTTTAGAAATCCTGTGTTGCAAATGTCCGCACAACCACGTCCTACTTCTTTCTTTCTGTCCAACTACGCGGAGCATGGTTCACTTCCAGCTCCAGCTATGTTTAGTCTGTTGAAACGAGGAACCAAATTCGAAACCCCTAACTCAATACCAACTTCTGAAACACACAAACACACACACAAACACACACTCTCCTACGGAATACGATCTTATATTGCTAACGATCCATCAATTCTCTGAGACAATAGTTAATCTTTAAACGCTAACAAAACAAAAGGAAAGTATTATCTGATCGTG ] [+] EMBL BM641130 [ ccgCAATACCAACTTCTGAAACACACAAACACACACACAAACACACACTCTCCTACGGAATACGATCTTATATTGCTAACGATCCATCAATTCTCTGAGACAATAGTTAATCTTTAAACGCTAACAAAACAAAAGGAAAGTATTATCTGATCGTGAAATAAACCTTTTTGACAACATTGATGAAGTTGGCTGATTGTGCTGACAACGGGAAGATGTATCAAAATTGCTCTACACAAACATGCTGATACAACATTGTAAAACCAAATTGTTTCCCTAACGCCACCGAAAGTCCGAGGGAAATATATAAAGCTCTAAGCTATGTTTTACAAACGATAGAAAAGAGAACAACATTCAAAAGTTGAAAACAACACACAAGAAAACATACTAAATACACAAACAAACAGTTCACAATTTCAGGCAATGGCATAGAGGAAAGAAAGCAAACTCAAAGAAGAAACCTTAAACTAAACGAACCAACACACAAAACTTGACTATATCACCCATTTATTCCCACATATCGGAACACAAGATTACAGGACGTATTAAACAAAAAAAACGAAAAGAGAGAAGCGAGAAGGAAACTAAACCATCAACGTCAACGTATATATATCAATAGCAGGAGAGTGCATCAACTGGATATCATTCACGGTCGACATATCCCAATGTCA] consensusID : consensus_5523#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 793 fasta sequence [CGACCCACGCGTCCGCTACGGAATACGATCTTATATTGCTAACGATCCATCAATTCTCTGAGACAATAGTTAATCTTTAAACGCTAACAAAACAAAAGGAAAGTATTATCTGATCGTGAAATAAACCTTTTTGACAACATTGATGAAGTTGGCTGATTGTGCTGACAACGGGAAGATGTATCAAAATTGCTCTACACAAACATGCTGATACAACATTGTAAAACCAAATTGTTTCCCTAGCGCCACCGAAATGAAACAACAAAAAAAGTCCGAGGGAAATATATAAAGCTCTAAGCTATGTTTTACAAACGATAGAAAAGAGAACAACATTCAAAAGTTGAAAACAACACACAAGAAAACATACTAAATACACAAACAAACAGTTCACAATTTCAGGCAATGGCATAGAGGAAAGAAAGCAAACTCAAAGAAGAAACCTTAAACTAAACGAACCAACACACAAAACTTGACTATATCACCCATTTATTCCCACATATCGGAACACAAGATTACAGGACGTATTAAACAAAAAAAACGAAAAGAAAGAAGCGAAAAGGAAACTAAACCATCAACGTCAACGTATATATATCAATAGCAGGAGAGTGCATCAACTGGATATCATTCACGGTCGGCATATCCAAATGTCACTTGGAACAAAAAATAGAAAAAAAG-AAAACATTTACTAAACCAAGCGATACACGCTTAGAGTGTTAAAGGTATGCGCCATTGAGTTTTGGGTTCTGTTGAATCCAGTTTATAACAAAATGCATTTTCAAATGCTCTTTCGTCTACT] [+] EMBL BM631068 [CGACCCACGCGTCCGCTACGGAATACGATCTTATATTGCTAACGATCCATCAATTCTCTGAGACAATAGTTAATCTTTAAACGCTAACAAAACAAAAGGAAAGTATTATCTGATCGTGAAATAAACCTTTTTGACAACATTGATGAAGTTGGCTGATTGTGCTGACAACGGGAAGATGTATCAAAATTGCTCTACACAAACATGCTGATACAACATTGTAAAACCAAATTGTTTCCCTAGCGCCACCGAAATGAAACAACAAAAAAAGTCCGAGGGAAATATATAAAGCTCTAAGCTATGTTTTACAAACGATAGAAAAGAGAACAACATTCAAAAGTTGAAAACAACACACAAGAAAACATACTAAATACACAAACAAACAGTTCACAATTTCAGGCAATGGCATAGAGGAAAGAAAGCAAACTCAAAGAAGAAACCTTAAACTAAACGAACCAACACACAAAACTTGACTATATCACCCATTTATTCCCACATATCGGAACACAAGATTACAGGACGTATTAAACAAAAAAAACGAAAAGAAAGAAGCGAAAAGGAAACTAAACCATCAACGTCAACGTATATATATCAATAGCAGGAGAGTGCATCAACTGGATATCATTCACGGTCGGCATATCCAAATGTCACTTGGAACAAAAAATAGAAAAAAAG AAAACATTTACTAAACCAAGCGATA ] [+] EMBL BM638629 [ ccGAAATAAACCTTTTTGACAACATTGATGAAGTTGGCTGATTGTGCTGACAACGGGAAGATTTATCAAAATTGCTCTACACAAACATGCTGATACAACATTGTAAAACCAAATTGTTTCCCTAGCGCCACCGAAATGAAACAACAAAAAAAGTCCGAGGGAAATATATAAAGCTCTAAGCTATGTTTTACAAACGATAGAAAAGAGAACAACATTCAAAAGTTGAAAACAACACACAAGAAAACATACTAAATACACAAACAAACAGTTCACAATTTCAGGCAATGGCATAGAGGAAAGAAAGCAAACTCAAAGAAGAAACCTTAAACTAAACGAACCAACACACAAAACTTGACTATATCACCCATTTATTCCCACATATCTGAACACAAGATTACAGGACGTATTAAACAAAAAAAACGAAAAGAAAGAAGCGAAAAGGAAACTAAACCATCAACGTCAACGTATATATATCAATAGCAGGAGAGTGCATCAACTGGATATCATTCACGGTCGGCATATCCAAATGTCACTTGGAACAAAAAATAGAAAAAAAGAAAAACATTTACTAAACCAAGCGATACACGCTTAGAGTGTTAAAGGTATGCGCCATTGAGTTTTGGGTTCTGTTGAATCCAGTTTATAACAAAATGCATTTTCAAATGCTCTTTCGTCTACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5523#0 CCGCCCTGACATTGCCGGGGAGCTCGATCTCTGGTCTTTGGTGATGCGGATCTTTCACTT 60 consensus_5523#1 ------------------------------------------------------------ consensus_5523#0 GTTTACTTTCGTATTGATGTACCATGTGTGTATGACGAATGTAAGAATACTGTGCATGTT 120 consensus_5523#1 ------------------------------------------------------------ consensus_5523#0 CTGTGTGTGTGTGTGTGTGTGTACGTGACTGTATGTGTACAGAGTGTGTACTTGAAAGAT 180 consensus_5523#1 ------------------------------------------------------------ consensus_5523#0 GTGAGCTTTACGTTCCATATACGCAATCACCTGCGCAACACTCACATCGGGCATAGGAAA 240 consensus_5523#1 ------------------------------------------------------------ consensus_5523#0 AACATAAGTTATGGCGTCACCATAGATGAGCATCGATGTTTTAGATATGTATCTGTCCAG 300 consensus_5523#1 ------------------------------------------------------------ consensus_5523#0 TAAAGCGTCCTGCAAGCAAGATGAATGTCTATGTGCTCTCGAAAGGATGTCGGGTGCCGC 360 consensus_5523#1 ------------------------------------------------------------ consensus_5523#0 TGAGGACAAAACTGGGCGAAGGCTATAGCACCAGCTCCTAGTTAATCTGTTTAGAAATCC 420 consensus_5523#1 ------------------------------------------------------------ consensus_5523#0 TGTGTTGCAAATGTCCGCACAACCACGTCCTACTTCTTTCTTTCTGTCCAACTACGCGGA 480 consensus_5523#1 ------------------------------------------------------------ consensus_5523#0 GCATGGTTCACTTCCAGCTCCAGCTATGTTTAGTCTGTTGAAACGAGGAACCAAATTCGA 540 consensus_5523#1 ------------------------------------------------------------ consensus_5523#0 AACCCCTAACTCAATACCAACTTCTGAAACACACAAACACACACACAAACACACAC-TCT 599 consensus_5523#1 ----------------------------------------------CGACCCACGCGTCC 14 ** *** * ** consensus_5523#0 CCTACGGAATACGATCTTATATTGCTAACGATCCATCAATTCTCTGAGACAATAGTTAAT 659 consensus_5523#1 GCTACGGAATACGATCTTATATTGCTAACGATCCATCAATTCTCTGAGACAATAGTTAAT 74 *********************************************************** consensus_5523#0 CTTTAAACGCTAACAAAACAAAAGGAAAGTATTATCTGATCGTGAAATAAACCTTTTTGA 719 consensus_5523#1 CTTTAAACGCTAACAAAACAAAAGGAAAGTATTATCTGATCGTGAAATAAACCTTTTTGA 134 ************************************************************ consensus_5523#0 CAACATTGATGAAGTTGGCTGATTGTGCTGACAACGGGAAGATGTATCAAAATTGCTCTA 779 consensus_5523#1 CAACATTGATGAAGTTGGCTGATTGTGCTGACAACGGGAAGATGTATCAAAATTGCTCTA 194 ************************************************************ consensus_5523#0 CACAAACATGCTGATACAACATTGTAAAACCAAATTGTTTCCCTAACGCCACCGAAA--- 836 consensus_5523#1 CACAAACATGCTGATACAACATTGTAAAACCAAATTGTTTCCCTAGCGCCACCGAAATGA 254 ********************************************* *********** consensus_5523#0 -------------GTCCGAGGGAAATATATAAAGCTCTAAGCTATGTTTTACAAACGATA 883 consensus_5523#1 AACAACAAAAAAAGTCCGAGGGAAATATATAAAGCTCTAAGCTATGTTTTACAAACGATA 314 *********************************************** consensus_5523#0 GAAAAGAGAACAACATTCAAAAGTTGAAAACAACACACAAGAAAACATACTAAATACACA 943 consensus_5523#1 GAAAAGAGAACAACATTCAAAAGTTGAAAACAACACACAAGAAAACATACTAAATACACA 374 ************************************************************ consensus_5523#0 AACAAACAGTTCACAATTTCAGGCAATGGCATAGAGGAAAGAAAGCAAACTCAAAGAAGA 1003 consensus_5523#1 AACAAACAGTTCACAATTTCAGGCAATGGCATAGAGGAAAGAAAGCAAACTCAAAGAAGA 434 ************************************************************ consensus_5523#0 AACCTTAAACTAAACGAACCAACACACAAAACTTGACTATATCACCCATTTATTCCCACA 1063 consensus_5523#1 AACCTTAAACTAAACGAACCAACACACAAAACTTGACTATATCACCCATTTATTCCCACA 494 ************************************************************ consensus_5523#0 TATCGGAACACAAGATTACAGGACGTATTAAACAAAAAAAACGAAAAGAGAGAAGCGAGA 1123 consensus_5523#1 TATCGGAACACAAGATTACAGGACGTATTAAACAAAAAAAACGAAAAGAAAGAAGCGAAA 554 ************************************************* ******** * consensus_5523#0 AGGAAACTAAACCATCAACGTCAACGTATATATATCAATAGCAGGAGAGTGCATCAACTG 1183 consensus_5523#1 AGGAAACTAAACCATCAACGTCAACGTATATATATCAATAGCAGGAGAGTGCATCAACTG 614 ************************************************************ consensus_5523#0 GATATCATTCACGGTCGACATATCCCAATGTCA--------------------------- 1216 consensus_5523#1 GATATCATTCACGGTCGGCATATCCAAATGTCACTTGGAACAAAAAATAGAAAAAAAGAA 674 ***************** ******* ******* consensus_5523#0 ------------------------------------------------------------ consensus_5523#1 AACATTTACTAAACCAAGCGATACACGCTTAGAGTGTTAAAGGTATGCGCCATTGAGTTT 734 consensus_5523#0 ----------------------------------------------------------- consensus_5523#1 TGGGTTCTGTTGAATCCAGTTTATAACAAAATGCATTTTCAAATGCTCTTTCGTCTACT 793 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||