cluster # 5524

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Anopheles gambiae
cluster # 5524 cluster # 5524 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5524#0 length = 734 sequences # 2

consensus_5524#1 length = 686 sequences # 2

consensusID : consensus_5524#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 734
fasta sequence

                              [AACGCGACACTGGGCCGAACAACAGAGCATTTCGAACGCTACAGCTGAACCTTGGCGGAGGTACATTTTCTCGTAGTGTTACAATTGAAGCGAAGTGTGGATAAGAAGGCCGAGCGGCAATTAAGTGATAAGCGACGACGACTATCAGAAAAAGCACAAAGTATAATGGTTCGCCTATTGACCTAATCGCCAAAGACTTTCAAAGGCGCACAGTGGTGTTGTTGCCGTGGGCAGTGAATCTGTTTGTAATATGTGTCTGGAACAAAGCGAATGAATGGTGAAAGTGTTCATGAGCGGTGTGTTCATTTGAAAAAGTGCACCCAAAGAGAGACTGCAACAGGCAGAACAAGCGTGATCTTTTGCATTTCGACAGGGGCACGGCAGTGGACTGAGTGTCCTTTTCGTCCTTCTTTACCTGCGGTCCAGGCAAGGACGTGCGCTATTGGTTGAGGGAGGCAAACGAGAAGGGAGAAACGCAGCCGAAAATGTACGCCAAGCTGAACGGTCGCACTGTTGCTGGGAACGGACGAAGGTACCACCAACAGCATAGCTACTGCTGGCTGCTGGCCTGGATAAGTGCAGCATTTTTGCTCGCGTCTAGACACACCGGCATAATGCCTTGCCTGAACGTACGAAACAATGAATGCTCCATCTGTCAGCACAATATTGCCGGGACGCAGCGGCTGGAGGCGCTCTGTGGCCATACGTTCCATCGCCACTGTCTGGCATTGTGG]

[+] EMBL BX606960             [AACGCGACACTGGGCCGAACAACAGAGCATTTCGAACGCTACAGCTGAACCTTGGCGGAGGTACATTTTCTCGTAGTGTTACAATTGAAGCGAAGTGTGGATAAGAAGGCCGAGCGGCAATTAAGTGATAAGCGACGACGACTATCAGAAAAAGCACAAAGTATAATGGTTCGCCTATTGACCTAATCGCCAAAGACTTTCAAAGGCGCACAGTGGTGTTGTTGCCGTGGGCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BM593752             [                                        ccgGCTGAACCTTGGCGGCGGTACATTTTCTCGTAGTGTGACAATTGAAGCGAAGTGTGGATAAGAAGGCCGAGCGGCAATTAAGTGATAAGCGACGACGACTATCAGAAAAAGCACGAAGTATAATGGTTCGCCTATTGACCTAATCGCCAAAGACTTTCAAAGGCGCACAGTGGTGTTGTTGCCGTGGGCAGTGAATCTGTTTGTAATATGTGTCTGGAACAAAGCGAATGAATGGTGAAAGTGTTCATGAGCGGTGTGTTCATTTGAAAAAGTGCACCCAAAGAGAGACTGCAACAGGCAGAACAAGCGTGATCTTTTGCATTTCGACAGGGGCACGGCAGTGGACTGAGTGTCCTTTTCGTCCTTCTTTACCTGCGGTCCAGGCAAGGACGTGCGCTATTGGTTGAGGGAGGCAAACGAGAAGGGAGAAACGCAGCCGAAAATGTACGCCAAGCTGAACGGTCGCACTGTTGCTGGGAACGGACGAAGGTACCACCAACAGCATAGCTACTGCTGGCTGCTGGCCTGGATAAGTGCAGCATTTTTGCTCGCGTCTAGACACACCGGCATAATGCCTTGCCTGAACGTACGAAACAATGAATGCTCCATCTGTCAGCACAATATTGCCGGGACGCAGCGGCTGGAGGCGCTCTGTGGCCATACGTTCCATCGCCACTGTCTGGCATTGTGG]




>consensus_5524#0
AACGCGACACTGGGCCGAACAACAGAGCATTTCGAACGCTACAGCTGAACCTTGGCGGAG
GTACATTTTCTCGTAGTGTTACAATTGAAGCGAAGTGTGGATAAGAAGGCCGAGCGGCAA
TTAAGTGATAAGCGACGACGACTATCAGAAAAAGCACAAAGTATAATGGTTCGCCTATTG
ACCTAATCGCCAAAGACTTTCAAAGGCGCACAGTGGTGTTGTTGCCGTGGGCAGTGAATC
TGTTTGTAATATGTGTCTGGAACAAAGCGAATGAATGGTGAAAGTGTTCATGAGCGGTGT
GTTCATTTGAAAAAGTGCACCCAAAGAGAGACTGCAACAGGCAGAACAAGCGTGATCTTT
TGCATTTCGACAGGGGCACGGCAGTGGACTGAGTGTCCTTTTCGTCCTTCTTTACCTGCG
GTCCAGGCAAGGACGTGCGCTATTGGTTGAGGGAGGCAAACGAGAAGGGAGAAACGCAGC
CGAAAATGTACGCCAAGCTGAACGGTCGCACTGTTGCTGGGAACGGACGAAGGTACCACC
AACAGCATAGCTACTGCTGGCTGCTGGCCTGGATAAGTGCAGCATTTTTGCTCGCGTCTA
GACACACCGGCATAATGCCTTGCCTGAACGTACGAAACAATGAATGCTCCATCTGTCAGC
ACAATATTGCCGGGACGCAGCGGCTGGAGGCGCTCTGTGGCCATACGTTCCATCGCCACT
GTCTGGCATTGTGG

consensusID : consensus_5524#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 686
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGGCGGATGCAGGTCGAGAGAGAAGCGGGTTGAACGCGACACTGGGCCGAACAACAGAGCATTTCGAACGCTACAGCTGAACCTTGGCGGAGGTACATTTTCTCGTAGTGTTACAATTGAAGCGAAGTGTGGATAAGAAGGCCGGGCGGCAATTAAGTGATAAGCGACGACGACTATCAGAAAAAGCACAAAGTATAATGGTTCGCCTATTGACCTAATCGCCAAAGACTTTCAAAGGCGCACAGTGGTGTTGTTGCCGTGGGCAGTGAATCTGTTTGGTAAGCAAGATTACATCAAATCACACAACGCAAGCGCAATTAATATGTGTCTGGAACAAAGCGAATGAATGGTGAAAGTGTTCATGAGCGGTGTGTTCATTTGAAAAAGTGCACCCAAAGAGAGACTGCAACAGGCAGAACAAGCGTGATCTTTTGCATTTCGACAGGGGCACGGCAGTGGACTGAGTGTCCTTTTCGTCCTTCTTTACCTGCGGTCCAGGCAAGGACGTGCGCTATTGGTTGAGGGAGGCAAACGAGAAAGGAGAAACGCAGCCGAAAATGTACGCCAAGCTGAACGGTCGCACTGTTGCTGGGAACGGACGAAGGTACCACCAACAGCATAGCTACTGCTGGCTGCTGGCCTGGATAAGTGCAGCATTTTT]

[+] EMBL BM579767             [CCGCCCACGCGTCCGCCCACGCGTCCGGCGGATGCAGGTCGAGAGAGAAGCGGGTTGAACGCGACACTGGGCCGAACAACAGAGCATTTCGAACGCTACAGCTGAACCTTGGCGGAGGTACATTTTCTCGTAGTGTTACAATTGAAGCGAAGTGTGGATAAGAAGGCCGGGCGGCAATTAAGTGATAAGCGACGACGACTATCAGAAAAAGCACAAAGTATAATGGTTCGCCTATTGACCTAATCGCCAAAGACTTTCAAAGGCGCACAGTGGTGTTGTTGCCGTGGGCAGTGAATCTGTTTGGTAAGCAAGATTACATCAAATCACACAACGCAAGCGCAATTAATATGTGTCTGGAACAAAGCGAATGAATGGTGAAAGTGTTCATGAGCGGTGTGTTCATTTGAAAAAGTGCACCCAAAGAGAGACTGCAACAGGCAGAACAAGCGTGATCTTTTGCATTTCGACAGGGGCACGGCAGTGGACTGAGTGTCCTTTTCGTCCTTCTTTACCTGCGGTCCAGGCAAGGACGTGCGCTATTGGTTGAGGGAGGCAAACGAGAAAGGAGAAACGCAGCCGAAAATGTACGCCAAGCTGAACGGTCGCACTGTTGCTGGGAACGGACGAAGGTACCACCAACAGCATAGCTACTGCTGGCTGCTGGCCTGGAT               ]
[+] EMBL BM611535             [                                                                                                                                                                                                     ccgATCAGAAAAAGCACAAAGTATAATGGTTCGCCTATTGACCTAATCGCCAAAGACTTTCAAAGGCGCACAGTGGTGTTGTTGCCGTGGGCAGTGAATCTGTTTGGTAAGCAAGATTACATCAAATCACACAACGCAAGCGCAATTAATATGTGTCTGGAACAAAGCGAATGAATGGTGAAAGTGTTCATGAGCGGTGTGTTCATTTGAAAAAGTGCACCCAAAGAGAGACTGCAACAGGCAGAACAAGCGTGATCTTTTGCATTTCGACAGGGGCACGGCAGTGGACTGAGTGTCCTTTTCGTCCTTCTTTACCTGCGGTCCAGGCAAGGACGTGCGCTATTGGTTGAGGGAGGCAAACGAGAAAGGAGAAACGCAGCCGAAAATGTACGCCAAGCTGAACGGTCGCACTGTTGCTGGGAACGGACGAAGGTACCACCAACAGCATAGCTACTGCTGGCTGCTGGCCTGGATAAGTGCAGCATTTTT]




>consensus_5524#1
CCGCCCACGCGTCCGCCCACGCGTCCGGCGGATGCAGGTCGAGAGAGAAGCGGGTTGAAC
GCGACACTGGGCCGAACAACAGAGCATTTCGAACGCTACAGCTGAACCTTGGCGGAGGTA
CATTTTCTCGTAGTGTTACAATTGAAGCGAAGTGTGGATAAGAAGGCCGGGCGGCAATTA
AGTGATAAGCGACGACGACTATCAGAAAAAGCACAAAGTATAATGGTTCGCCTATTGACC
TAATCGCCAAAGACTTTCAAAGGCGCACAGTGGTGTTGTTGCCGTGGGCAGTGAATCTGT
TTGGTAAGCAAGATTACATCAAATCACACAACGCAAGCGCAATTAATATGTGTCTGGAAC
AAAGCGAATGAATGGTGAAAGTGTTCATGAGCGGTGTGTTCATTTGAAAAAGTGCACCCA
AAGAGAGACTGCAACAGGCAGAACAAGCGTGATCTTTTGCATTTCGACAGGGGCACGGCA
GTGGACTGAGTGTCCTTTTCGTCCTTCTTTACCTGCGGTCCAGGCAAGGACGTGCGCTAT
TGGTTGAGGGAGGCAAACGAGAAAGGAGAAACGCAGCCGAAAATGTACGCCAAGCTGAAC
GGTCGCACTGTTGCTGGGAACGGACGAAGGTACCACCAACAGCATAGCTACTGCTGGCTG
CTGGCCTGGATAAGTGCAGCATTTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5524#0      ---------------------------------------------------------AAC 3
consensus_5524#1      CCGCCCACGCGTCCGCCCACGCGTCCGGCGGATGCAGGTCGAGAGAGAAGCGGGTTGAAC 60
                                                                               ***

consensus_5524#0      GCGACACTGGGCCGAACAACAGAGCATTTCGAACGCTACAGCTGAACCTTGGCGGAGGTA 63
consensus_5524#1      GCGACACTGGGCCGAACAACAGAGCATTTCGAACGCTACAGCTGAACCTTGGCGGAGGTA 120
                      ************************************************************

consensus_5524#0      CATTTTCTCGTAGTGTTACAATTGAAGCGAAGTGTGGATAAGAAGGCCGAGCGGCAATTA 123
consensus_5524#1      CATTTTCTCGTAGTGTTACAATTGAAGCGAAGTGTGGATAAGAAGGCCGGGCGGCAATTA 180
                      ************************************************* **********

consensus_5524#0      AGTGATAAGCGACGACGACTATCAGAAAAAGCACAAAGTATAATGGTTCGCCTATTGACC 183
consensus_5524#1      AGTGATAAGCGACGACGACTATCAGAAAAAGCACAAAGTATAATGGTTCGCCTATTGACC 240
                      ************************************************************

consensus_5524#0      TAATCGCCAAAGACTTTCAAAGGCGCACAGTGGTGTTGTTGCCGTGGGCAGTGAATCTGT 243
consensus_5524#1      TAATCGCCAAAGACTTTCAAAGGCGCACAGTGGTGTTGTTGCCGTGGGCAGTGAATCTGT 300
                      ************************************************************

consensus_5524#0      TTG----------------------------------------TAATATGTGTCTGGAAC 263
consensus_5524#1      TTGGTAAGCAAGATTACATCAAATCACACAACGCAAGCGCAATTAATATGTGTCTGGAAC 360
                      ***                                        *****************

consensus_5524#0      AAAGCGAATGAATGGTGAAAGTGTTCATGAGCGGTGTGTTCATTTGAAAAAGTGCACCCA 323
consensus_5524#1      AAAGCGAATGAATGGTGAAAGTGTTCATGAGCGGTGTGTTCATTTGAAAAAGTGCACCCA 420
                      ************************************************************

consensus_5524#0      AAGAGAGACTGCAACAGGCAGAACAAGCGTGATCTTTTGCATTTCGACAGGGGCACGGCA 383
consensus_5524#1      AAGAGAGACTGCAACAGGCAGAACAAGCGTGATCTTTTGCATTTCGACAGGGGCACGGCA 480
                      ************************************************************

consensus_5524#0      GTGGACTGAGTGTCCTTTTCGTCCTTCTTTACCTGCGGTCCAGGCAAGGACGTGCGCTAT 443
consensus_5524#1      GTGGACTGAGTGTCCTTTTCGTCCTTCTTTACCTGCGGTCCAGGCAAGGACGTGCGCTAT 540
                      ************************************************************

consensus_5524#0      TGGTTGAGGGAGGCAAACGAGAAGGGAGAAACGCAGCCGAAAATGTACGCCAAGCTGAAC 503
consensus_5524#1      TGGTTGAGGGAGGCAAACGAGAAAGGAGAAACGCAGCCGAAAATGTACGCCAAGCTGAAC 600
                      *********************** ************************************

consensus_5524#0      GGTCGCACTGTTGCTGGGAACGGACGAAGGTACCACCAACAGCATAGCTACTGCTGGCTG 563
consensus_5524#1      GGTCGCACTGTTGCTGGGAACGGACGAAGGTACCACCAACAGCATAGCTACTGCTGGCTG 660
                      ************************************************************

consensus_5524#0      CTGGCCTGGATAAGTGCAGCATTTTTGCTCGCGTCTAGACACACCGGCATAATGCCTTGC 623
consensus_5524#1      CTGGCCTGGATAAGTGCAGCATTTTT---------------------------------- 686
                      **************************                                  

consensus_5524#0      CTGAACGTACGAAACAATGAATGCTCCATCTGTCAGCACAATATTGCCGGGACGCAGCGG 683
consensus_5524#1      ------------------------------------------------------------
                                                                                  

consensus_5524#0      CTGGAGGCGCTCTGTGGCCATACGTTCCATCGCCACTGTCTGGCATTGTGG 734
consensus_5524#1      ---------------------------------------------------