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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5526#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1500 fasta sequence
[CCGCGGACGCGTGGGGGGTTTTTCCCGCTAGGTAGTAGAGAATCCGGAGTCCGATGCGACCATATCAGAGTGCACTAGTGACGACGACGACGACGACGACGACGGGACGGCAGGTGCGTGTGGTGGCCCGCGGGTGATAAGGGCAAGGTGAGAGACATTAAAAAGGTGTTAACGGTCGCGGTCGCTCTAAAGTGTACAGGCTGTGTGTGTGTTTGTGTATGTGTGTTTGTAGCGCACGCGTAACTAGTGAGAGTGATCGGTCCGAGAGTGGGGAGGAGAAGGAAAAAGCAGGAAGAAGAGGGGGAATACGTCCCGAAACCAGACCGGAAAGGAAGAGAAAGAGTGCCACCATCACAGGTGTTAATACAAAGCGTCAACAAAACAGTTTGCTACGCAGCAGCCAGAACGTAGACCACGAGACAACGGCACAACGCAAGGCCGCACAGCATCTGCACAGGAGCCAGACAGCGCGTACAGTACCAACCCGAAAACAACCACCACCATCATCATCATGGACATTGTTGCAGCAACAACCGAGCGGCTGGTCGATACGCTTGCGAACGGGACACTCTCGCTAACCCCCCGGCAAG-AT-GGCGAAGAGCATACCGATCACGACGACGACTCGCCAACGATCGCCAAAGTCACATCCATGGTGGTGCTGTTCAGCGTCAGCATGGTGTGCGGACTCGTACCCTTCAAGCTGGTGCGCTGGTTTAACCTCAACCCGGCCACCCCGTCCGGAGGCACACACCTCTTCCTGATCCGGCTACTGCTCTCCTTCGGCGGTGGTGCCCTCCTAAGCACTACCTTCCTGCATCTGCTGCCCGAGATCAATCACTCGATCGAAGCGCTCGTTGAGACGGGCGCCCTGCCCGCCCCGGATGAACTGCCCTTCCCGCTGGGTGAGTTTCTCCTTACGAGCGGGTTCTTCATGATCTACCTCACGGAGGAGCTGGTCCACTGGTGGATGCATCGCCGCTCGGCCAATGCACGGCGGATCGCACGGTCCGAAAAGACAGCGCCCGGTGGCAGCAGTACGATGGTACCGATCGATGGTGGCGCATCGAAGCACGACCACGCGCACGGACATTCGCATCTCCCGATCGGGAACGTAACCGCCGTCTACCCCGTGACGGATGTGGATGGGACGCAGGTCGTACCGAGTGTGGTTCCGGTGCCGCCAGCGCCAAGCGCTAACGGTCCCCTGCGCGGCCTGCTGATCGTACTCGCCCTCTCCATTCACGAGCTGTTCGAAGGGCTCGCGGTAGGTCTGGAACGGTCACCATCCCGGCCGTATGGTTGCTGTACCGGGTGCAGTCGGCCTCGGCCACAAGTTTGTGATTGCGTTCTGCGTTCCGCGGTTTGAGCTGNTAGGTAGCNCGGCGGTNCAGTTCCGCGATTGCCGNAACTGGTACATNTCGGCTACNTCGGGNGGNTNAACCCCGGCGGGANNAGGCTTGGTTTTGGCTCANAGTCGGGANTTCGAACGAACCAANAACC]
[+] EMBL BM587146 [CCGCGGACGCGTGGGGGGTTTTTCCCGCTAGGTAGTAGAGAATCCGGAGTCCGATGCGACCATATCAGAGTGCACTAGTGACGACGACGACGACGACGACGACGGGACGGCAGGTGCGTGTGGTGGCCCGCGGGTGATAAGGGCAAGGTGAGAGACATTAAAAAGGTGTTAACGGTCGCGGTCGCTCTAAAGTGTACAGGCTGTGTGTGTGTTTGTGTATGTGTGTTTGTAGCGCACGCGTAACTAGTGAGAGTGATCGGTCCGAGAGTGGGGAGGAGAAGGAAAAAGCAGGAAGAAGAGGGGGAATACGTCCCGAAACCAGACCGGAAAGGAAGAGAAAGAGTGCCACCATCACAGGTGTTAATACAAAGCGTCAACAAAACAGTTTGCTACGCAGCAGCCAGAACGTAGACCACGAGACAACGGCACAACGCAAGGCCGCACAGCATCTGCACAGGAGCCAGACAGCGCGTACAGTACCAACCCGAAAACAACCACCACCATCATCATCATGGACATTGTTGCAGCAACAACCGAGCGGCTGGTCGATACGCTTGCGAACGGGACACTCTCGC ]
[+] EMBL BM587705 [ cCGCGTAACTAGTGAGAGTGATCGGTCCGAGAGTGGGGAGGAGAAGGAAAAAGCAGGAAGAAGAGGGGGAATACGTCCCGAAACCAGACCGGAAAGGAAGAGAAAGAGTGCCACCATCACAGGTGTTAATACAAAGCGTCAACAAAACAGTTTGCTACGCAGCAGCCAGAACGTAGACCACGAGACAACGGCACAACGCAAGGCCGCACAGCATCTGCACAGGAGCCAGACAGCGCGTACAGTACCAACCCGAAAACAACCACCACCATCATCATCATGGACATTGTTGCAGCAACAACCGAGCGGCTGGTCGATACGCTTGCGAACGGGACACTCTCGCTAACCCCCCGGCAAG AT GGCGAAGAGCATACCGATCACGACGACGACTCGCCAACGATCGCCAAAGTCACATCCATGGTGGTGCTGTTCAGCGTCAGCATGGTGTGCGGACTCGTACCCTTCAAGCTGGTGCGCTGGTTTAACCTCAACCCGGCCACCCCGTCCGGAGGCACACACCTCTTCCTGATCCGGCTACTGCTCTCCTTCGGCGGTGGTGCCCTCCTAAGCACTACCTTCCTGCATCTGCTGCCCGAGATCAATCACTCGATCGAAGCGCTCGTTGAGACGGGCGCCCTGCCCGCCCCGGATGAACTGCCCTTCCCGCTGGGTGAGTTTCTCCTTACGAGCGGGTTC ]
[+] EMBL BX467402 [ CAAGAATCGGC ACGAG GGCCGATCACGACGACGACTCACCAACGATCGCCAAAGTCACCTCCATGGTGGTGCTGTTCAGCGTCAGCATGGTGTGCGGACTCGTACCCTTCAAGCTGGTGCGCTGGTTTAACCTCAACCCGGCCACCCCGTCCGGAGGCACACACCTCTTCCTGATCCGGCTACTGCTCTCCTTCGGCGGTGGTGCCCTCCTAAGCACCACCTTCCTGCATCTGCTGCCCGAGATCAATCACTCGATCGAAGCGCTCGTTGAGACGGGCGCCCTGCCCGCCCCGGACGAACTGCCCTTCCCGCTGGGTGAGTTTCTCCTTACGAGCGGCTTCTTCATGATCTACCTCACGGAGGAGCTGGTCCACTGGTGGATGCATCGCCGCTCGGCCAATGCACGGCGGATCGCACGGTCCGAAAAGACAGCGCCCGGTGGCAGCAGTACGATGGTACCGATCGATGGTGGCGCATCGAAGCACGACCACGCGCACGGACATTCGCATCTCCCGATCGGGAACGTAACCGCCGTCTACCCCGTGACGGATGTGGATGGGACGCAGGTCGTACCGAGTGTGGTTCCGGTGCCGCCAGCGCCAAGCGCTAACGGTCCCCTGCGCGGCCTGCTGATCGTACTCGCCCTCTCCATTCACGAGCTGTTCGAAGGGCTCGCGGTAGGTCTGGAACGGTCACCATCCCGGCCGTATGGTTGCTGTACCGGGTGCAGTCGGCCTCGGCCACAAGTTTGTGATTGCGTTCTGCGTTCCGCGGTTTGAGCTGNTAGGTAGCNCGGCGGTNCAGTTCCGCGATTGCCGNAACTGGTACATNTCGGCTACNTCGGGNGGNTNAACCCCGGCGGGANNAGGCTTGGTTTTGGCTCANAGTCGGGANTTCGAACGAACCAANAACC]
consensusID : consensus_5526#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 700 fasta sequence
[CCGCCCACGCGTCCGCCAGGTTGCAGGTTTGAAGGGTTTTTCCCGCTAGGTAGTAGAGAATCCGGAGTCCGATGCGACCATATCAGAGTGCACTAGTGACGACGACGACGACGACGACGACGGGACGGCAGGTGCGTGTGGTGGCCCGCGGGTGATAAGGGCAAGGTGAGAGACATTAAAAAGGTGTTAACGGTCGCGGTCGCTCTAAAGTGTACAGGCTGTGTGTGTGTTTGTGTATGTGTGTTTGTAGCGCACGCGTAACTTGAGAGTGATCGGTCCGAGAGTGGGGAGGAGAAGGAAAAAGCAGGAAGAAGAGGGGGAATACGTCCCGAAACCAGACCGGAAAGGAAGAGAAAGAGTGCCACCATCACAGGTGTTAATACAAAGCGTCAACAAAACAGTTTGCTACGCAGCAGCCAGAACGTAGACCACGAGACAACGGCACAACGCAAGGCCGCACAGCATCTGCACAGGAGCCAGACAGCGCGTACAGTACCAACCCGAAAACAACCACCACCATCATCATCATGGACATTGTTGCAGCAACAACCGAGCGGCTGGTCGATACGCTTGCGAACGGGACACTCTCGCTAACCCCCCGGCAAGATGGCGAAGAGCATACCGATCACGACGACGACTTCGCCAACGATCGCCAAAGTCACATCCATGGTGGTGCTGTTCAGCGTCAGCATGGTGTGCG]
[+] EMBL BM579807 [CCGCCCACGCGTCCGCCAGGTTGCAGGTTTGAAGGGTTTTTCCCGCTAGGTAGTAGAGAATCCGGAGTCCGATGCGACCATATCAGAGTGCACTAGTGACGACGACGACGACGACGACGACGGGACGGCAGGTGCGTGTGGTGGCCCGCGGGTGATAAGGGCAAGGTGAGAGACATTAAAAAGGTGTTAACGGTCGCGGTCGCTCTAAAGTGTACAGGCTGTGTGTGTGTTTGTGTATGTGTGTTTGTAGCGCACGCGTAACTTGAGAGTGATCGGTCCGAGAGTGGGGAGGAGAAGGAAAAAGCAGGAAGAAGAGGGGGAATACGTCCCGAAACCAGACCGGAAAGGAAGAGAAAGAGTGCCACCATCACAGGTGTTAATACAAAGCGTCAACAAAACAGTTTGCTACGCAGCAGCCAGAACGTAGACCACGAGACAACGGCACAACGCAAGGCCGCACAGCATCTGCACAGGAGCCAGACAGCGCGTACAGTACCAACCCGAAAACAACCACCACCATCATCATCATGGACATTGTTGCAGCAACAACCGAGCGGCTGGTCGATACGCTTGCGAACGGGACACTCTCGCTAACCCCCCGGCAAGATGGCGAAGAGCATACCGATCACGACGACGACTTCGCCAACGATCGCCAAAGTCACATCCATGGTGGTGCTGTTCAGCGTCAGCATGGTGTGCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5526#0 ------------------CCGCGGACGCGTGGGGGGTTTTTCCCGCTAGGTAGTAGAGAA 42
consensus_5526#1 CCGCCCACGCGTCCGCCAGGTTGCAGGTTTGAAGGGTTTTTCCCGCTAGGTAGTAGAGAA 60
* * * ** ***************************
consensus_5526#0 TCCGGAGTCCGATGCGACCATATCAGAGTGCACTAGTGACGACGACGACGACGACGACGA 102
consensus_5526#1 TCCGGAGTCCGATGCGACCATATCAGAGTGCACTAGTGACGACGACGACGACGACGACGA 120
************************************************************
consensus_5526#0 CGGGACGGCAGGTGCGTGTGGTGGCCCGCGGGTGATAAGGGCAAGGTGAGAGACATTAAA 162
consensus_5526#1 CGGGACGGCAGGTGCGTGTGGTGGCCCGCGGGTGATAAGGGCAAGGTGAGAGACATTAAA 180
************************************************************
consensus_5526#0 AAGGTGTTAACGGTCGCGGTCGCTCTAAAGTGTACAGGCTGTGTGTGTGTTTGTGTATGT 222
consensus_5526#1 AAGGTGTTAACGGTCGCGGTCGCTCTAAAGTGTACAGGCTGTGTGTGTGTTTGTGTATGT 240
************************************************************
consensus_5526#0 GTGTTTGTAGCGCACGCGTAACTAGTGAGAGTGATCGGTCCGAGAGTGGGGAGGAGAAGG 282
consensus_5526#1 GTGTTTGTAGCGCACGCGTAACT--TGAGAGTGATCGGTCCGAGAGTGGGGAGGAGAAGG 298
*********************** ***********************************
consensus_5526#0 AAAAAGCAGGAAGAAGAGGGGGAATACGTCCCGAAACCAGACCGGAAAGGAAGAGAAAGA 342
consensus_5526#1 AAAAAGCAGGAAGAAGAGGGGGAATACGTCCCGAAACCAGACCGGAAAGGAAGAGAAAGA 358
************************************************************
consensus_5526#0 GTGCCACCATCACAGGTGTTAATACAAAGCGTCAACAAAACAGTTTGCTACGCAGCAGCC 402
consensus_5526#1 GTGCCACCATCACAGGTGTTAATACAAAGCGTCAACAAAACAGTTTGCTACGCAGCAGCC 418
************************************************************
consensus_5526#0 AGAACGTAGACCACGAGACAACGGCACAACGCAAGGCCGCACAGCATCTGCACAGGAGCC 462
consensus_5526#1 AGAACGTAGACCACGAGACAACGGCACAACGCAAGGCCGCACAGCATCTGCACAGGAGCC 478
************************************************************
consensus_5526#0 AGACAGCGCGTACAGTACCAACCCGAAAACAACCACCACCATCATCATCATGGACATTGT 522
consensus_5526#1 AGACAGCGCGTACAGTACCAACCCGAAAACAACCACCACCATCATCATCATGGACATTGT 538
************************************************************
consensus_5526#0 TGCAGCAACAACCGAGCGGCTGGTCGATACGCTTGCGAACGGGACACTCTCGCTAACCCC 582
consensus_5526#1 TGCAGCAACAACCGAGCGGCTGGTCGATACGCTTGCGAACGGGACACTCTCGCTAACCCC 598
************************************************************
consensus_5526#0 CCGGCAAGATGGCGAAGAGCATACCGATCACGACGACGACT-CGCCAACGATCGCCAAAG 641
consensus_5526#1 CCGGCAAGATGGCGAAGAGCATACCGATCACGACGACGACTTCGCCAACGATCGCCAAAG 658
***************************************** ******************
consensus_5526#0 TCACATCCATGGTGGTGCTGTTCAGCGTCAGCATGGTGTGCGGACTCGTACCCTTCAAGC 701
consensus_5526#1 TCACATCCATGGTGGTGCTGTTCAGCGTCAGCATGGTGTGCG------------------ 700
******************************************
consensus_5526#0 TGGTGCGCTGGTTTAACCTCAACCCGGCCACCCCGTCCGGAGGCACACACCTCTTCCTGA 761
consensus_5526#1 ------------------------------------------------------------
consensus_5526#0 TCCGGCTACTGCTCTCCTTCGGCGGTGGTGCCCTCCTAAGCACTACCTTCCTGCATCTGC 821
consensus_5526#1 ------------------------------------------------------------
consensus_5526#0 TGCCCGAGATCAATCACTCGATCGAAGCGCTCGTTGAGACGGGCGCCCTGCCCGCCCCGG 881
consensus_5526#1 ------------------------------------------------------------
consensus_5526#0 ATGAACTGCCCTTCCCGCTGGGTGAGTTTCTCCTTACGAGCGGGTTCTTCATGATCTACC 941
consensus_5526#1 ------------------------------------------------------------
consensus_5526#0 TCACGGAGGAGCTGGTCCACTGGTGGATGCATCGCCGCTCGGCCAATGCACGGCGGATCG 1001
consensus_5526#1 ------------------------------------------------------------
consensus_5526#0 CACGGTCCGAAAAGACAGCGCCCGGTGGCAGCAGTACGATGGTACCGATCGATGGTGGCG 1061
consensus_5526#1 ------------------------------------------------------------
consensus_5526#0 CATCGAAGCACGACCACGCGCACGGACATTCGCATCTCCCGATCGGGAACGTAACCGCCG 1121
consensus_5526#1 ------------------------------------------------------------
consensus_5526#0 TCTACCCCGTGACGGATGTGGATGGGACGCAGGTCGTACCGAGTGTGGTTCCGGTGCCGC 1181
consensus_5526#1 ------------------------------------------------------------
consensus_5526#0 CAGCGCCAAGCGCTAACGGTCCCCTGCGCGGCCTGCTGATCGTACTCGCCCTCTCCATTC 1241
consensus_5526#1 ------------------------------------------------------------
consensus_5526#0 ACGAGCTGTTCGAAGGGCTCGCGGTAGGTCTGGAACGGTCACCATCCCGGCCGTATGGTT 1301
consensus_5526#1 ------------------------------------------------------------
consensus_5526#0 GCTGTACCGGGTGCAGTCGGCCTCGGCCACAAGTTTGTGATTGCGTTCTGCGTTCCGCGG 1361
consensus_5526#1 ------------------------------------------------------------
consensus_5526#0 TTTGAGCTGNTAGGTAGCNCGGCGGTNCAGTTCCGCGATTGCCGNAACTGGTACATNTCG 1421
consensus_5526#1 ------------------------------------------------------------
consensus_5526#0 GCTACNTCGGGNGGNTNAACCCCGGCGGGANNAGGCTTGGTTTTGGCTCANAGTCGGGAN 1481
consensus_5526#1 ------------------------------------------------------------
consensus_5526#0 TTCGAACGAACCAANAACC 1500
consensus_5526#1 -------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||