cluster # 5532

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Anopheles gambiae
cluster # 5532 cluster # 5532 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5532#0 length = 791 sequences # 3

consensus_5532#1 length = 675 sequences # 1

consensusID : consensus_5532#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 791
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGCCGTTGCGTCGGTGCACACGCCCGAAGCCACCAAGCGGTACCGCGTGCTGATGCGCTAGAACGCGCCCTAGAAAGGAGCTTACAATTTTGCAGAATGCAAATGTGATATTAGGTTAATCGTATAGGGTAGAGTAGGTACGCAACCAGGTACGTCATTCAAAGAGAGCGGACGTATCTGGAGCGGTGGAGGCCGACGTGTACCCATCGAAAGGAGAAAGTCCAAAAAGGATGTTGATGAATGAACAGATCCCCTTGGGGATTATTTCGAGCAGATGCTATGATATTTTTGCAAGTCAG----CTCTCTCTTTCCCTTTATTTCATTCTCCCAGTGGAACCTCCTTATCAATTGTCATATGTATCGTTACGATGTAAAGTGGATT-GACTGTAAGGAAACAAGAAAGGTGTAATTTCTGACCAAAAGTTGTGATTAGAGCGTGTAAAAGTGTATTGCAGAGCAATATTTTCATCCCGAACGGGGATGTGCCTTGGAGCGGCAGGTAAGCCGAGGTTGTGAGAGCAGGTATAAAATGAGACTAAGCTTAGCTAGAGATAGCGGACCCTTGACTAGACTTGATCCGGAGGGTTTAAAAGACCCAGCCGACATTTGTCGTTAGCAAACGTTTAGCCATAAAATGC-GGGCGTGTGAACTGAAGCCAGCAAAGAGCAATGAGATATTTATTGAAGTGAAATTTGCAATAAAATCATTGTAAACAAATTCAAAACCAAAAAAAAAAAAAAAAAGGCCACATGTTCCCGAGCGGGGGG]

[+] EMBL BM580273             [CCGCCCACGCGTCCGCCCACGCGTCCGCCGTTGCGTCGGTGCACACGCCCGAAGCCACCAAGCGGTACCGCGTGCTGATGCGCTAGAACGCGCCCTAGAAAGGAGCTTACAATTTTGCAGAATGCAAATGTGATATTAGGTTAATCGTATAGGGTAGAGTAGGTACGCAACCAGGTACGTCATTCAAAGAGAGCGGACGTATCTGGAGCGGTGGAGGCCGACGTGTACCCATCGAAAGGAGAAAGTCCAAAAAGGATGTTGATGAATGAACAGATCCCCTTGGGGATTATTTCGAGCAGATGCTATGATATTTTTGCAAGTCAG    CTCTCTCTTTCCCTTTATTTCATTCTCCCAGTGGAACCTCCTTATCAATTGTCATATGTATCGTTACGATGTAAAGTGGATT GACTGTAAGGAAACAAGAAAGGTGTAATTTCTGACCAAAAGTTGTGATTAGAGCGTGTAAAAGTGTATTGCAGAGCAATATTTTCATCCCGAACGGGGATGTGCCTTGGAGCGGCAGGTAAGCCGAGGTTGTGAGAGCAGGTATAAAATGAGACTAAGCTTAGCTAGAGATAGCGGACCCTTGACTAGACTTGAGCCAGAGGGTTTAAAAGACCCAGCCGACATTTGTCGTTAGCAAACGTTTAGCCATATAATGCGGGGCGCGTGAACTGAAGCCAGCg                                                                                                          ]
[-] EMBL CNS08I1N             [                                                                                                                                                                                                                                                                                                               TATGATATTTTTGCAAGTCAGGTTTTTCTGTGTTTGGCTTTATTTGATTGTGGGAGTGGAACCTCCTTATCAATTGTTATATGTATCGTTACGATGTAAAGTGGATTAGATTGTAAGGAAACAAGAAAGGTGTAATTTCTGACCAAAAGTTGTGATTAGAGCGTGTAAAAGTGTATTGCAGAGCAATATTTTCATCCCAAACGGGGATGTGCCTTGGAGCGGCAGGTAAGCCGAGGTTGTGAGAGCAGGTATAAAATGAGACTAAGCTTAGCTAGAGATAGCGGACCCTTGACTAGACTTGATCCGGAGGGTTTAAAAGACCCAGCCGACATTTGTCGTTAGCAAACGTTTAGCCATAAAATGC GGGCGTGTGAACTGAAGCCAGCAAAGAGCAATGAGATATTTATTGAAG                                                                                 ]
[+] EMBL CNS08ZE7             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GAGACTAAGCTTAGCTAGAGATAGCGGACCCTTGACTAGACTTGATCCGGA GGTTTAAAAGACCCAGCCGACATTTGTCGTTAGCAAACGTTTAGCCATAAAATGC GGGCGTGTTAACTGAAGCCAGCAAAGAGCAATGAGATATTTATTGAAGTGAAATTTGCAATAAAATCATTGTAAACAAATTCAAAACCAAAAAAAAAAAAAAAAAGGCCACATGTTCCCGAGCGGGGGG]




>consensus_5532#0
CCGCCCACGCGTCCGCCCACGCGTCCGCCGTTGCGTCGGTGCACACGCCCGAAGCCACCA
AGCGGTACCGCGTGCTGATGCGCTAGAACGCGCCCTAGAAAGGAGCTTACAATTTTGCAG
AATGCAAATGTGATATTAGGTTAATCGTATAGGGTAGAGTAGGTACGCAACCAGGTACGT
CATTCAAAGAGAGCGGACGTATCTGGAGCGGTGGAGGCCGACGTGTACCCATCGAAAGGA
GAAAGTCCAAAAAGGATGTTGATGAATGAACAGATCCCCTTGGGGATTATTTCGAGCAGA
TGCTATGATATTTTTGCAAGTCAGCTCTCTCTTTCCCTTTATTTCATTCTCCCAGTGGAA
CCTCCTTATCAATTGTCATATGTATCGTTACGATGTAAAGTGGATTGACTGTAAGGAAAC
AAGAAAGGTGTAATTTCTGACCAAAAGTTGTGATTAGAGCGTGTAAAAGTGTATTGCAGA
GCAATATTTTCATCCCGAACGGGGATGTGCCTTGGAGCGGCAGGTAAGCCGAGGTTGTGA
GAGCAGGTATAAAATGAGACTAAGCTTAGCTAGAGATAGCGGACCCTTGACTAGACTTGA
TCCGGAGGGTTTAAAAGACCCAGCCGACATTTGTCGTTAGCAAACGTTTAGCCATAAAAT
GCGGGCGTGTGAACTGAAGCCAGCAAAGAGCAATGAGATATTTATTGAAGTGAAATTTGC
AATAAAATCATTGTAAACAAATTCAAAACCAAAAAAAAAAAAAAAAAGGCCACATGTTCC
CGAGCGGGGGG

consensusID : consensus_5532#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 675
fasta sequence

                              [AGCGCTCAAGCGCGATCTGCACCTGGCCGCCCGGTTCACGCTGTACGAGCAGCAGCTGACGGAGAACAATGCCATCGTCGCCAACCTGGACACGCACGAGGTACGGTTGCTTTCGTCGCAGTCGCTCGTGGACGGCGACATCGTCGGCATGTCGCAGCTGGTATCGTCCATGCTGGAGGCTGTCAGTGCGATGTGGTCCGCTGGAATCTCCGCTTATCAGTGCATGGCGTTTATTGAATCGAAACTGCGCGAGCTCTACCTGCAGTCGTAAACGATCGCGAGCGTCATGCTCGCGACAGACTTCTGCACGCTGAGCTCGATCACCACCGCCATGGACATCACTGCCAACGATATGGAGCTGCTGCTGTCCGTTGCGTCGGTGCACACGCCCGAAGCCACCAAGCGGTACCGCGTGCTGATGCGCTAGAACGTGCCTTAGAAAGGAGCTTACAATTTTGCAGAATGCAAATGTGATATTAGGTTAATCATTTAGGGTAGAGTAGGTACGCAACCAGGTACGTCATTCAAAGAGAGCGGACGTATCTGGAGAGGTGGGTGCCAACGTGTACCCAGCGAAAGGAGAAAGTCGAAAAAGGATGTAGATGAATGAACAGATCCCCTTGGGGATTATTTCGAGCAGATGCTATGATATTTTTGCAAGTCAGCTCTCTCTTT]

[+] EMBL BX609079             [AGCGCTCAAGCGCGATCTGCACCTGGCCGCCCGGTTCACGCTGTACGAGCAGCAGCTGACGGAGAACAATGCCATCGTCGCCAACCTGGACACGCACGAGGTACGGTTGCTTTCGTCGCAGTCGCTCGTGGACGGCGACATCGTCGGCATGTCGCAGCTGGTATCGTCCATGCTGGAGGCTGTCAGTGCGATGTGGTCCGCTGGAATCTCCGCTTATCAGTGCATGGCGTTTATTGAATCGAAACTGCGCGAGCTCTACCTGCAGTCGTAAACGATCGCGAGCGTCATGCTCGCGACAGACTTCTGCACGCTGAGCTCGATCACCACCGCCATGGACATCACTGCCAACGATATGGAGCTGCTGCTGTCCGTTGCGTCGGTGCACACGCCCGAAGCCACCAAGCGGTACCGCGTGCTGATGCGCTAGAACGTGCCTTAGAAAGGAGCTTACAATTTTGCAGAATGCAAATGTGATATTAGGTTAATCATTTAGGGTAGAGTAGGTACGCAACCAGGTACGTCATTCAAAGAGAGCGGACGTATCTGGAGAGGTGGGTGCCAACGTGTACCCAGCGAAAGGAGAAAGTCGAAAAAGGATGTAGATGAATGAACAGATCCCCTTGGGGATTATTTCGAGCAGATGCTATGATATTTTTGCAAGTCAGCTCTCTCTTT]




>consensus_5532#1
AGCGCTCAAGCGCGATCTGCACCTGGCCGCCCGGTTCACGCTGTACGAGCAGCAGCTGAC
GGAGAACAATGCCATCGTCGCCAACCTGGACACGCACGAGGTACGGTTGCTTTCGTCGCA
GTCGCTCGTGGACGGCGACATCGTCGGCATGTCGCAGCTGGTATCGTCCATGCTGGAGGC
TGTCAGTGCGATGTGGTCCGCTGGAATCTCCGCTTATCAGTGCATGGCGTTTATTGAATC
GAAACTGCGCGAGCTCTACCTGCAGTCGTAAACGATCGCGAGCGTCATGCTCGCGACAGA
CTTCTGCACGCTGAGCTCGATCACCACCGCCATGGACATCACTGCCAACGATATGGAGCT
GCTGCTGTCCGTTGCGTCGGTGCACACGCCCGAAGCCACCAAGCGGTACCGCGTGCTGAT
GCGCTAGAACGTGCCTTAGAAAGGAGCTTACAATTTTGCAGAATGCAAATGTGATATTAG
GTTAATCATTTAGGGTAGAGTAGGTACGCAACCAGGTACGTCATTCAAAGAGAGCGGACG
TATCTGGAGAGGTGGGTGCCAACGTGTACCCAGCGAAAGGAGAAAGTCGAAAAAGGATGT
AGATGAATGAACAGATCCCCTTGGGGATTATTTCGAGCAGATGCTATGATATTTTTGCAA
GTCAGCTCTCTCTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5532#0      CCGCCCACGCGTCCGCCCACGCGTCCGCCGTTGCGTCGGTGCACACGCCCGAAGCCACCA 60
consensus_5532#1      ----------------------------------------------------AGCGCTCA 8
                                                                          ***   **

consensus_5532#0      AGCGGTACCGCGTGCTGATGCGCTAGAACGCGCCCTAGAAAGGAGCTTACAATTTTGCAG 120
consensus_5532#1      AGCGCGATCTGCACCTGGCCGCCCGGTTCACGCTGTACGA-GCAGCAGCTGACGGAGAAC 67
                      ****  * *     ***     *  *  * ***  **  * * ***     *    * * 

consensus_5532#0      AATGCAAATGTGATATTAGGTTAATCGTATAGGGTAGAGTAGGTACGCAACCAGGTACGT 180
consensus_5532#1      AATGCCATCGT--CGCCAACCTGGACACGCACG---AGGTACGGTTGCTTTCGTCGCAGT 122
                      ***** *  **      *   *   *    * *     *** *   **   *      **

consensus_5532#0      CATTCAAAGAGAGCGGACGTATCTGGAGCGGTGGAGGCCGACGTGTACCCATCGAAAGGA 240
consensus_5532#1      CGCTCGTGGACGGCG-ACATCGTCGGCATGTCGCAGCTGGTATCGTCCATGCTGGAGGCT 181
                      *  **   **  *** ** *    **   *  * **   *    ** *     * * *  

consensus_5532#0      GAAAGTCCAAAAAGGAT-GTTGATGAATGAACAGATCCCCTTGGGGATTATTTCGAGCAG 299
consensus_5532#1      GTCAGTGCGATGTGGTCCGCTGGAATCTCCGCTTATCAGTGCATGGCGTTTATTGAATCG 241
                      *  *** * *   **   * **     *   *  ***       **  * * * **   *

consensus_5532#0      ATGCTATGATATTTTTGCAAGTCAGCTCTCTCTTTCCCTTTATTTCATTCTCCCAGTGGA 359
consensus_5532#1      AAACTGCGCGAGCTCTACCTG-CAGTCGTAAACGATCGCGAGCGTCATGCTCGCGACAGA 300
                      *  **  *  *  * * *  * ***   *       *       **** *** *    **

consensus_5532#0      ACCTCCTTATCAATTGTCATATGTATCGTTACGATGTAAAGTGGATTGACTGTAAGGAAA 419
consensus_5532#1      --CTTCTGCACGCTGAGCTCGATCACCACCGCCATGGACA------TCACTGCCAACGAT 352
                        ** **   *  *   *      * *    * *** * *      * ****  *   * 

consensus_5532#0      CAAGAAAGGTGTAATTTCTGACCAAAAGTTGTGATTAGAGCGTGTAAAAGTGTATTGCAG 479
consensus_5532#1      -----ATGGAGCTGCTGCTGTCCGTT-GCGTCGGTGCACACGCCCGAAGCCACCAAGCGG 406
                           * ** *    * *** **    *    * *     **    **        ** *

consensus_5532#0      AGCAATATTTTCATCCCGAACGGGGATGTGCCTTGGAGCGGCAGGTAAGCCGAGGTTGTG 539
consensus_5532#1      TACCGCGTGCTGATGC---GCTAGAACGTGCCTTAGAAAGGAGCTTA---CAATTTTGCA 460
                        *    *  * ** *    *  * * ******* **  **    **   * *  ***  

consensus_5532#0      AGA-GCAGGTATAAAATGAGACTAAGCTTAGCTAGAG-ATAGCGGACCCTTGACTAG--A 595
consensus_5532#1      GAATGCAAATGTGATATTAGGTTAA--TCATTTAGGGTAGAGTAGGTACGCAACCAGGTA 518
                        * ***  * * * ** **  ***  * *  *** * * **  *   *   ** **  *

consensus_5532#0      CTTGATCCGGAGGGTTTAAAAGACCCAGCCGACATTTGTCGTTAGCAAACGTTTAGCCAT 655
consensus_5532#1      CGTCATTCAAAGAGAGCGGACGTATCTGGAGAGGTGGGT-GCCAACGTGTACCCAGCGAA 577
                      * * ** *  ** *     * *   * *  **  *  ** *  * *        *** * 

consensus_5532#0      AAAATGCGGGCGTGTGA--ACTGAAGCCAGCAAAGAG---CAATGAGATATTTATTGAAG 710
consensus_5532#1      AGGAGAAAGTCGAAAAAGGATGTAGATGAATGAACAGATCCCCTTGGGGATTATTTCGAG 637
                      *  *    * **    *  *   *    *   ** **   *  *  *  ***  **  **

consensus_5532#0      TGAAATTTGCAATAAAATCATTGTAAACAAATTCAAAACCAAAAAAAAAAAAAAAAAGGC 770
consensus_5532#1      CAGA---TGCTATGATATTTTTGCAAGTCAGCTCTCTCTTT------------------- 675
                         *   *** ** * **  *** **   *  **                          

consensus_5532#0      CACATGTTCCCGAGCGGGGGG 791
consensus_5532#1      ---------------------