cluster # 5533

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Anopheles gambiae
cluster # 5533 cluster # 5533 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5533#0 length = 881 sequences # 3

consensus_5533#1 length = 502 sequences # 1

consensusID : consensus_5533#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 881
fasta sequence

                              [CCGGCGATAGCGTGCACGTTTGCAGTAGCCTCATCTGGTGGGATTGATTTGTGGTGCGAACCGTGTGGACGGCAGCGAAAATTGGAGTGTGTTTGTGCAGCGTGTTACGAACACAATTTAGGAGAAGAAAAAAAAAGGTGGATTTGTGTGTTCGGTGGTGGAAGAAGGCAGGAAGAAGCGTTCTGGATGCCACAATGAGGTTAATTTGTGCAAAAGTATTGTAACATTGCTGCTCTGCATCGCGGACAAGGAAGAACCAACTGGAAAGCCTGCCAAACGTAAAACTCGCATTCAGTGAAGCGTAAGCTCTACTCCCTACTGTGAAATCACCCTCCGGATCGTTTTACGGGAGAATAGCAAAGGAGGGGTTGGCCCCACACGCACAGGTGACAGCTGAAGAGCATCCAGGAGGGGGAATACATCATTTTCGACACTCTAATGTGCATCTCTTGCAAGTGACACACGGGAGCTGCATTGATTTTATCCCAGCCGCGGATTGCCCGTTGCCCTGTACACTCTCTTGGGCACTTGCTTGCTGTCCTACGGCAGTCACATCAGTGGGTGGGGAATCTATTATGTGGAGAGATTAAATTTTTCTTCATCTTCAGAGCCTGTCTCACATCCTTCTATCGTACCATCGGCTGGTCTAACTAGCAATCGAAAACAATTTGCTAGAAAGAAAACGCAAAACCCACTGAGGAAGGTACCAGTAGCGGCAGCAGAAGCATCATTAGCAGGCCTCGGAAAAGTTCNCTTTGTCGTACAAACGCGCGCGGNGCTGTGGATGTACNTCAATAGTGNGAGCGAGTGTGTGCATCGTTNCTTAGCANGCGCGGAAGGAAACCCCCGTGGCTCGCTGGATACCAACGCCAGGGGCACAT]

[+] EMBL BM617709             [CCGGCGATAGCGTGCACGTTTGCAGTAGCCTCATCTGGTGGGATTGATTTGTGGTGCGAACCGTGTGGACGGCAGCGAAAATTGGAGTGTGTTTGTGCAGCGTGTTACGAACACAATTTAGGAGAAGAAAAAAAAAGGTGGATTTGTGTGTTCGGTGGTGGAAGAAGGCAGGAAGAAGCGTTCTGGATGCCACAATGAGGTTAATTTGTGCAAAAGTATTGTAACATTGCTGCTCTGCATCGCGGACAAGGAAGAACCAACTGGAAAGCCTGCCAAACGTAAAACTCGCATTCAGTGAAGCGTAAGCTCTACTCCCTACTGTGAAATCACCCTCCGGATCGTTTTACGGGAGAATAGCAAAGGAGGGGTTGGCCCCACACGCACAGGTGACAGCTGAAGAGCATCCAGGAGGGGGAATACATCATTTTCGACACTCTAATGTGCATCTCTTGCAAGTGACACACGGGAGCTGCATTGATTTTATCCCAGCCGCGGATTGCCCGTTGCCCTGTACACTCTCTTGGGCACTTGCTTGCTGTCCTACGGCAGTCACATCAGTGGGTGGGGAATCTATTATGTGGAGAGATTAAATTTTTCTTCATCTTCAGAGCCTGTCTCACATCCTTCTATCGTACCATCGGCTGGTCTAACTAGCAATCGAAAACAATTTGCTAGAAAG AAACGCAAAACCCACTGAGGAAGGTACCAGTAGCGGCAGCAGA                                                                                                                                                              ]
[+] EMBL BM580452             [           ccGCACGTTTGCAGTAGCCTCATCTGGTGGGATTGATTTGTGGTGCGAACCGTGTGGACGGCAGCGAAAATTGGAGTGTGTTTGTGCAGCGTGTTACGAACACAATTTAGGAGAAGAAAAAAAAAGGTGGATTTGTGTGTTCGGTGGTGGAAGAAGGCAGGAAGAAGCGTTCTGGATGCCACAATGAGGTTAATTTGTGCAAAAGTATTGTAACATTGCTGCTCTGCATCGCGGACAAGGAAGAACCAACTGGAAAGCCTGCCAAACGTAAAACTCGCATTCAGTGAAGCGTAAGCTCTACTCCCTACTGTGAAATCACCCTCCGGATCGTTTTACGGGAGAATAGCAAAGGAGGGGTTGGCCCCACACGCACAGGTGACAGCTGAAGAGCATCCAGGAGGGGGAATACATCATTTTCGACACTCTAATGTGCATCTCTTGCAAGTGACACACGGGAGCTGCATTGATTTTATCCCAGCCGCGGATTGCCCGTTGCCCTGTACACTCTCTTGGGCACTTGCTTGCTGTCCTACGGCAGTCACATCAGTGGGTGGGGAATCTATTATGTGGAGAGATTAAATTTTTCTTCATCTTCAGAGCCTGTCTCACATCCTTCTATCGTACCATCGGCTGGTCTAACTAGCAATCGAAAACAATTTGCTAGAAAGAAAACGCAAAACCCACTGAGGAAG                                                                                                                                                                                  ]
[+] EMBL BX623497             [                                                                                                                                                                                                                                CATTGCTGCTCTGCATCGCGGACAAGGAAGAACCAACTGGAAAGCCTGCCAAACGTAAAACTCGCATTCAGTGAAGCGTAAGCTCTACTCCCTACTGTGAAATCACCCTCCGGATCGTTTTACGGGAGAATAGCAAAGGAGGGGTTGGCCCCACACGCACAGGTGACAGCTGAAGAGCATCCANGAGGGGGAATACATCATTTTCGACACTCTAATGTGCATCTCTTGCAAGTGACACACGGGAGCTGCATTGATTTTATCCCAGCCGCGGATTGCCCGTTGCCCTGTACACTCTCTTGGGCACTTGCTTGCTGTCCTACGGCAGTCACATCAGTGGGTGGGGAATCTATTATGTGGAGAGATTAAATTTTTCTTCATCTTCAGAGCCTGTCTCACATCCTTCTATCGTACCATCGGCTGGTCTAACTAGCAATCGAAAACAATTTGCTAGAAAGAAAACGCAAAACCCACTGAGGAAGGTACCAGTAGCGGCAGCANAAGCATCATTAGCAGGCCTCGGAAAAGTTCNCTTTGTCGTACAAACGCGCGCGGNGCTGTGGATGTACNTCAATAGTGNGAGCGAGTGTGTGCATCGTTNCTTAGCANGCGCGGAAGGAAACCCCCGTGGCTCGCTGGATACCAACGCCAGGGGCACAT]




>consensus_5533#0
CCGGCGATAGCGTGCACGTTTGCAGTAGCCTCATCTGGTGGGATTGATTTGTGGTGCGAA
CCGTGTGGACGGCAGCGAAAATTGGAGTGTGTTTGTGCAGCGTGTTACGAACACAATTTA
GGAGAAGAAAAAAAAAGGTGGATTTGTGTGTTCGGTGGTGGAAGAAGGCAGGAAGAAGCG
TTCTGGATGCCACAATGAGGTTAATTTGTGCAAAAGTATTGTAACATTGCTGCTCTGCAT
CGCGGACAAGGAAGAACCAACTGGAAAGCCTGCCAAACGTAAAACTCGCATTCAGTGAAG
CGTAAGCTCTACTCCCTACTGTGAAATCACCCTCCGGATCGTTTTACGGGAGAATAGCAA
AGGAGGGGTTGGCCCCACACGCACAGGTGACAGCTGAAGAGCATCCAGGAGGGGGAATAC
ATCATTTTCGACACTCTAATGTGCATCTCTTGCAAGTGACACACGGGAGCTGCATTGATT
TTATCCCAGCCGCGGATTGCCCGTTGCCCTGTACACTCTCTTGGGCACTTGCTTGCTGTC
CTACGGCAGTCACATCAGTGGGTGGGGAATCTATTATGTGGAGAGATTAAATTTTTCTTC
ATCTTCAGAGCCTGTCTCACATCCTTCTATCGTACCATCGGCTGGTCTAACTAGCAATCG
AAAACAATTTGCTAGAAAGAAAACGCAAAACCCACTGAGGAAGGTACCAGTAGCGGCAGC
AGAAGCATCATTAGCAGGCCTCGGAAAAGTTCNCTTTGTCGTACAAACGCGCGCGGNGCT
GTGGATGTACNTCAATAGTGNGAGCGAGTGTGTGCATCGTTNCTTAGCANGCGCGGAAGG
AAACCCCCGTGGCTCGCTGGATACCAACGCCAGGGGCACAT

consensusID : consensus_5533#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 502
fasta sequence

                              [GAATCCGCACGATNGNTCTTGGGCACTTGCTTGCTGTCCTACGGCAGTCACATCAGTGGGTGGGGAATCTATTATGTGGAGAGATTAAATTTTTCTTCATCTTCAGAGCCTGTCTCACATCCTTCTATCGTACCATCGGCTGGTCTAACTAGCAATCGAAAACAATTTGCTAGAAAGAAAACGCAAAACCCACTGAGGAAGGTACCAGTAGCGGCAGCAGAAGCATCATTAGCAGGCCTCGGAAAAGTTCGCTTTGTCGTACAAACGCGCGCGGTGCTGTGGATGTACGTCAATAGTGTGAGCGAGTGTGTGCATCGTTCCTTAGCAGGCGCGGAAGGAAACCCCCGTGGCTCGCTGGATACCAACGCCAGGGGCACATCAACGTAGGCAGGCCGTGGTGTAAAAGCAGGCAAAGAAAGCTCTGCTCAAACGTCGACGATTAGTGCACATAGGCATAGAGTGTGTGGAAAGAACGTGAAGAAGCATCTTCTCGTACCGCGAT]

[+] EMBL BX466462             [GAATCCGCACGATNGNTCTTGGGCACTTGCTTGCTGTCCTACGGCAGTCACATCAGTGGGTGGGGAATCTATTATGTGGAGAGATTAAATTTTTCTTCATCTTCAGAGCCTGTCTCACATCCTTCTATCGTACCATCGGCTGGTCTAACTAGCAATCGAAAACAATTTGCTAGAAAGAAAACGCAAAACCCACTGAGGAAGGTACCAGTAGCGGCAGCAGAAGCATCATTAGCAGGCCTCGGAAAAGTTCGCTTTGTCGTACAAACGCGCGCGGTGCTGTGGATGTACGTCAATAGTGTGAGCGAGTGTGTGCATCGTTCCTTAGCAGGCGCGGAAGGAAACCCCCGTGGCTCGCTGGATACCAACGCCAGGGGCACATCAACGTAGGCAGGCCGTGGTGTAAAAGCAGGCAAAGAAAGCTCTGCTCAAACGTCGACGATTAGTGCACATAGGCATAGAGTGTGTGGAAAGAACGTGAAGAAGCATCTTCTCGTACCGCGAT]




>consensus_5533#1
GAATCCGCACGATNGNTCTTGGGCACTTGCTTGCTGTCCTACGGCAGTCACATCAGTGGG
TGGGGAATCTATTATGTGGAGAGATTAAATTTTTCTTCATCTTCAGAGCCTGTCTCACAT
CCTTCTATCGTACCATCGGCTGGTCTAACTAGCAATCGAAAACAATTTGCTAGAAAGAAA
ACGCAAAACCCACTGAGGAAGGTACCAGTAGCGGCAGCAGAAGCATCATTAGCAGGCCTC
GGAAAAGTTCGCTTTGTCGTACAAACGCGCGCGGTGCTGTGGATGTACGTCAATAGTGTG
AGCGAGTGTGTGCATCGTTCCTTAGCAGGCGCGGAAGGAAACCCCCGTGGCTCGCTGGAT
ACCAACGCCAGGGGCACATCAACGTAGGCAGGCCGTGGTGTAAAAGCAGGCAAAGAAAGC
TCTGCTCAAACGTCGACGATTAGTGCACATAGGCATAGAGTGTGTGGAAAGAACGTGAAG
AAGCATCTTCTCGTACCGCGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5533#0      CCGGCGATAGCGTGCACGTTTGCAGTAGCCTCATCTGGTGGGATTGATTTGTGGTGCGAA 60
consensus_5533#1      ------------------------------------------------------------
                                                                                  

consensus_5533#0      CCGTGTGGACGGCAGCGAAAATTGGAGTGTGTTTGTGCAGCGTGTTACGAACACAATTTA 120
consensus_5533#1      ------------------------------------------------------------
                                                                                  

consensus_5533#0      GGAGAAGAAAAAAAAAGGTGGATTTGTGTGTTCGGTGGTGGAAGAAGGCAGGAAGAAGCG 180
consensus_5533#1      ------------------------------------------------------------
                                                                                  

consensus_5533#0      TTCTGGATGCCACAATGAGGTTAATTTGTGCAAAAGTATTGTAACATTGCTGCTCTGCAT 240
consensus_5533#1      ------------------------------------------------------------
                                                                                  

consensus_5533#0      CGCGGACAAGGAAGAACCAACTGGAAAGCCTGCCAAACGTAAAACTCGCATTCAGTGAAG 300
consensus_5533#1      ------------------------------------------------------------
                                                                                  

consensus_5533#0      CGTAAGCTCTACTCCCTACTGTGAAATCACCCTCCGGATCGTTTTACGGGAGAATAGCAA 360
consensus_5533#1      ------------------------------------------------------------
                                                                                  

consensus_5533#0      AGGAGGGGTTGGCCCCACACGCACAGGTGACAGCTGAAGAGCATCCAGGAGGGGGAATAC 420
consensus_5533#1      ------------------------------------------------------------
                                                                                  

consensus_5533#0      ATCATTTTCGACACTCTAATGTGCATCTCTTGCAAGTGACACACGGGAGCTGCATTGATT 480
consensus_5533#1      ------------------------------------------------------------
                                                                                  

consensus_5533#0      TTATCCCAGCCGCGGATTGCCCGTTGCCCTGTACACTCTCTTGGGCACTTGCTTGCTGTC 540
consensus_5533#1      ----------------------GAATCCGCACGATNGNTCTTGGGCACTTGCTTGCTGTC 38
                                            *   **          **********************

consensus_5533#0      CTACGGCAGTCACATCAGTGGGTGGGGAATCTATTATGTGGAGAGATTAAATTTTTCTTC 600
consensus_5533#1      CTACGGCAGTCACATCAGTGGGTGGGGAATCTATTATGTGGAGAGATTAAATTTTTCTTC 98
                      ************************************************************

consensus_5533#0      ATCTTCAGAGCCTGTCTCACATCCTTCTATCGTACCATCGGCTGGTCTAACTAGCAATCG 660
consensus_5533#1      ATCTTCAGAGCCTGTCTCACATCCTTCTATCGTACCATCGGCTGGTCTAACTAGCAATCG 158
                      ************************************************************

consensus_5533#0      AAAACAATTTGCTAGAAAGAAAACGCAAAACCCACTGAGGAAGGTACCAGTAGCGGCAGC 720
consensus_5533#1      AAAACAATTTGCTAGAAAGAAAACGCAAAACCCACTGAGGAAGGTACCAGTAGCGGCAGC 218
                      ************************************************************

consensus_5533#0      AGAAGCATCATTAGCAGGCCTCGGAAAAGTTCNCTTTGTCGTACAAACGCGCGCGGNGCT 780
consensus_5533#1      AGAAGCATCATTAGCAGGCCTCGGAAAAGTTCGCTTTGTCGTACAAACGCGCGCGGTGCT 278
                      ******************************** *********************** ***

consensus_5533#0      GTGGATGTACNTCAATAGTGNGAGCGAGTGTGTGCATCGTTNCTTAGCANGCGCGGAAGG 840
consensus_5533#1      GTGGATGTACGTCAATAGTGTGAGCGAGTGTGTGCATCGTTCCTTAGCAGGCGCGGAAGG 338
                      ********** ********* ******************** ******* **********

consensus_5533#0      AAACCCCCGTGGCTCGCTGGATACCAACGCCAGGGGCACAT------------------- 881
consensus_5533#1      AAACCCCCGTGGCTCGCTGGATACCAACGCCAGGGGCACATCAACGTAGGCAGGCCGTGG 398
                      *****************************************                   

consensus_5533#0      ------------------------------------------------------------
consensus_5533#1      TGTAAAAGCAGGCAAAGAAAGCTCTGCTCAAACGTCGACGATTAGTGCACATAGGCATAG 458
                                                                                  

consensus_5533#0      --------------------------------------------
consensus_5533#1      AGTGTGTGGAAAGAACGTGAAGAAGCATCTTCTCGTACCGCGAT 502