These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5542#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 619 fasta sequence [CCGCAAAGCACCAAGCATCACGAAATCACCGAAACAGAGAGTGGAACATGGTCGTGAGGCCACAAATTTAAGCGCTGTAAGTGGCACAGTGAATACATTGCTAGTGTAAGTGGTTCTGATAAATTCTTGGAGTGATCGCGATTGTGTGCGTGCGGTGTTGTTGTGTTCTGATCCGCTTCGAAAGAGTTGAATGACCAGAAAGATGAAGTTGTATTTGCTTCTAACAATCCTGTTATCTTTATTCGAGTTCGGATACGTGGCTCCAGCCTTCGGAGATGCCTTTCGCGTTGGCACGGAGGAAACGTTTGATTTTTCCAACGTAGTTCATGTGGGCAACGGTAAAAATGCAACTGTTCCATTTGGGTATCAAACACATGCAACGGTTATTGTGGGATCGGTGTGGGGCGATGATGAATCAAAGTTATTGAAAATTCAGGTGCAAAATCCCTCGCTTGTTAGCATTCCAGATGGCAAAGTTGGAACGATGATTGGAGCAGAATCTCCGTTTTACGCGTGGTGGAATTTAGGGCAAATCAAAGAGGTTTATTTTGAAGCTTCAGACGCACTACCGGTGAGAAACTTTAAGAAAGGAATATGTGCCCTGTTCCAGTATCAGCTG] [+] EMBL BM602107 [CCGCAAAGCACCAAGCATCACGAAATCACCGAAACAGAGAGTGGAACATGGTCGTGAGGCCACAAATTTAAGCGCTGTAAGTGGCACAGTGAATACATTGCTAGTGTAAGTGGTTCTGATAAATTCTTGGAGTGATCGCGATTGTGTGCGTGCGGTGTTGTTGTGTTCTGATCCGCTTCGAAAGAGTTGAATGACCAGAAAGATGAAGTTGTATTTGCTTCTAACAATCCTGTTATCTTTATTCGAGTTCGGATACGTGGCTCCAGCCTTCGGAGATGCCTTTCGCGTTGGCACGGAGGAAACGTTTGATTTTTCCAACGTAGTTCATGTGGGCAACGGTAAAAATGCAACTGTTCCATTTGGGTATCAAACACATGCAACGGTTATTGTGGGATCGGTGTGGGGCGATGATGAATCAAAGTTATTGAAAATTCAGGTGCAAAATCCCTCGCTTGTTAGCATTCCAGATGGCAAAGTTGGAACGATGATTGGAGCAGAATCTCCGTTTTACGCGTGGTGGAATTTAGGGCAAATCAAAGAGGTTTATTTTGAAGCTTCAGACGCACTACCGGTGAGAA ] [+] EMBL BM581095 [ ccgCCGAAACAGAGAGTGGAACATGGTCGTGAGGCCACAAATTTAAGCGCTGTAAGTGGCACAGTGAATACATTGCTAGTGTAAGTGGTTCTGATAAATTCTTGGAGTGATCGCGATTGTGTGCGTGCGGTGTTGTTGTGTTCTGATCCGCTTCGAAAGAGTTGAATGACCAGAAAGATGAAGTTGTATTTGCTTCTAACAATCCTGTTATCTTTATTCGAGTTCGGATACGTGGCTCCAGCCTTCGGAGATGCCTTTCGCGTTGGCACGGAGGAAACGTTTGATTTTTCCAACGTAGTTCATGTGGGCAACGGTAAAAATGCAACTGTTCCATTTGGGTATCAAACACATGCAACGGTTATTGTGGGATCGGTGTGGGGCGATGATGAATCAAAGTTATTGAAAATTCAGGTGCAAAATCCCTCGCTTGTTAGCATTCCAGATGGCAAAGTTGGAACGATGATTGGAGCAGAATCTCCGTTTTACGCGTGGTGGAATTTAGGGCAAATCAAAGAGGTTTATTTTGAAGCTTCAGACGCACTACCGGTGAGAAACTTTAAGAAAGGAATATGTGCCCTGTTCCAGTATCAGCTG] consensusID : consensus_5542#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 607 fasta sequence [CCGCGGACGCGTGGGTAAGCGCTGTAAGTGGCACAGTGAATACATTGCTAGTGTAAGTGGTTCTGATAAATTCTTGGAGTGATCGCGATTGCGTGCGTGCTGTATTGTTGTGTTCTGATCCGCTTCGAAAGAGTTGAATGACCAGAAAGATGAAGTTGTATTTGCTTCTAACAATCCTGTTATCTTTATTCGAGTTCGGATACGTGGCTCCAGCCTTCGGAGATGCCTTTCGCGTTGGAACGGAGGAAACGTTTGATTTTTCTAACGTAGTTCATGTGGGCAACGGTAAAAATGCAACTGTTCCATTTGGGTATCAAACACATGCAACGGTTATTGTGGGATCGGTGTGGGGCGATGATGAATCAAAGTTATTGAAAATTCAGGTGCAAAATCCCTCGCTTGTTAGCATTCCAGATGGCAAAGTTGGAACGATGATTGGAGCAGAATCTCCGTTTTACGCGTGGTGGAATTTAGGGCAAATCAAAGAGGTTTATTTTGAAGCTTCAGACGCACTACCGGTGAGAAACTTTAAGAAAGGAATATGTGCCCTGTTCCAGTATCAGCTGCTAGATGGCACGTACAGTGAGGTGGATCCTTCTGGGGGAGT] [+] EMBL BM610425 [CCGCGGACGCGTGGGTAAGCGCTGTAAGTGGCACAGTGAATACATTGCTAGTGTAAGTGGTTCTGATAAATTCTTGGAGTGATCGCGATTGCGTGCGTGCTGTATTGTTGTGTTCTGATCCGCTTCGAAAGAGTTGAATGACCAGAAAGATGAAGTTGTATTTGCTTCTAACAATCCTGTTATCTTTATTCGAGTTCGGATACGTGGCTCCAGCCTTCGGAGATGCCTTTCGCGTTGGAACGGAGGAAACGTTTGATTTTTCTAACGTAGTTCATGTGGGCAACGGTAAAAATGCAACTGTTCCATTTGGGTATCAAACACATGCAACGGTTATTGTGGGATCGGTGTGGGGCGATGATGAATCAAAGTTATTGAAAATTCAGGTGCAAAATCCCTCGCTTGTTAGCATTCCAGATGGCAAAGTTGGAACGATGATTGGAGCAGAATCTCCGTTTTACGCGTGGTGGAATTTAGGGCAAATCAAAGAGGTTTATTTTGAAGCTTCAGACGCACTACCGGTGAGAAACTTTAAGAAAGGAATATGTGCCCTGTTCCAGTATCAGCTGCTAGATGGCACGTACAGTGAGGTGGATCCTTCTGGGGGAGT] consensusID : consensus_5542#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 581 fasta sequence [CCGGATGAGACGATTTATGTTGGGAGCAACGGTTTAAACTAATCGTCGATCATTCACACACGAAATCACCGAAACAGAGAGTGGAACATGGTCGTGAGGCCACAAATTTAAGCGCTGTAAGTGGCACAGTGAATACATTGCTAGTGTAAGTGGTTCTGATAAATTCTTGGAGTGATCGCGATTGTGTGCGTGCGGTGTTGTTGTGTTCTGATCCGCTTCGAAAGAGTTGAATGACCAGAAAGATGAAGTTGTATTTGCTTCTAACAATCCTGTTATCTTTATTCGAGTTCGGATACGTGGCTCCAGCCTTCGGAGATGCCTTTCGCGTTGGCACGGAGGAAACGTTTGATTTTTCCAACGTAGTTCATGTGGGCAACGGTAAAAATGCAACTGTTCCATTTGGGTATCAAACACATGCAACGGTTATTGTGGGATCGGTGTGGGGCGATGATGAATCAAAGTTATTGAAAATTCAGGTGCAAAATCCCTCGCTTGTTAGCATTCCAGATGGCAAAGTTGGAACGATGATTGGAGCAGAATCTCCGTTTTACGCGTGGTGGAATTTAGGGCAAATCAAAGAG] [+] EMBL BM653304 [CCGGATGAGACGATTTATGTTGGGAGCAACGGTTTAAACTAATCGTCGATCATTCACACACGAAATCACCGAAACAGAGAGTGGAACATGGTCGTGAGGCCACAAATTTAAGCGCTGTAAGTGGCACAGTGAATACATTGCTAGTGTAAGTGGTTCTGATAAATTCTTGGAGTGATCGCGATTGTGTGCGTGCGGTGTTGTTGTGTTCTGATCCGCTTCGAAAGAGTTGAATGACCAGAAAGATGAAGTTGTATTTGCTTCTAACAATCCTGTTATCTTTATTCGAGTTCGGATACGTGGCTCCAGCCTTCGGAGATGCCTTTCGCGTTGGCACGGAGGAAACGTTTGATTTTTCCAACGTAGTTCATGTGGGCAACGGTAAAAATGCAACTGTTCCATTTGGGTATCAAACACATGCAACGGTTATTGTGGGATCGGTGTGGGGCGATGATGAATCAAAGTTATTGAAAATTCAGGTGCAAAATCCCTCGCTTGTTAGCATTCCAGATGGCAAAGTTGGAACGATGATTGGAGCAGAATCTCCGTTTTACGCGTGGTGGAATTTAGGGCAAATCAAAGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5542#0 -----------------------------------CCGCAAAGCACCAAGCAT-----CA 20 consensus_5542#2 CCGGATGAGACGATTTATGTTGGGAGCAACGGTTTAAACTAATCGTCGATCATTCACACA 60 consensus_5542#1 ------------------------------------------------------------ consensus_5542#0 CGAAATCACCGAAACAGAGAGTGGAACATGGTCGTGAGGCCACAAATTTAAGCGCTGTAA 80 consensus_5542#2 CGAAATCACCGAAACAGAGAGTGGAACATGGTCGTGAGGCCACAAATTTAAGCGCTGTAA 120 consensus_5542#1 ---------------------------------CCGCGGACGCGTGGGTAAGCGCTGTAA 27 * ** * * ************ consensus_5542#0 GTGGCACAGTGAATACATTGCTAGTGTAAGTGGTTCTGATAAATTCTTGGAGTGATCGCG 140 consensus_5542#2 GTGGCACAGTGAATACATTGCTAGTGTAAGTGGTTCTGATAAATTCTTGGAGTGATCGCG 180 consensus_5542#1 GTGGCACAGTGAATACATTGCTAGTGTAAGTGGTTCTGATAAATTCTTGGAGTGATCGCG 87 ************************************************************ consensus_5542#0 ATTGTGTGCGTGCGGTGTTGTTGTGTTCTGATCCGCTTCGAAAGAGTTGAATGACCAGAA 200 consensus_5542#2 ATTGTGTGCGTGCGGTGTTGTTGTGTTCTGATCCGCTTCGAAAGAGTTGAATGACCAGAA 240 consensus_5542#1 ATTGCGTGCGTGCTGTATTGTTGTGTTCTGATCCGCTTCGAAAGAGTTGAATGACCAGAA 147 **** ******** ** ******************************************* consensus_5542#0 AGATGAAGTTGTATTTGCTTCTAACAATCCTGTTATCTTTATTCGAGTTCGGATACGTGG 260 consensus_5542#2 AGATGAAGTTGTATTTGCTTCTAACAATCCTGTTATCTTTATTCGAGTTCGGATACGTGG 300 consensus_5542#1 AGATGAAGTTGTATTTGCTTCTAACAATCCTGTTATCTTTATTCGAGTTCGGATACGTGG 207 ************************************************************ consensus_5542#0 CTCCAGCCTTCGGAGATGCCTTTCGCGTTGGCACGGAGGAAACGTTTGATTTTTCCAACG 320 consensus_5542#2 CTCCAGCCTTCGGAGATGCCTTTCGCGTTGGCACGGAGGAAACGTTTGATTTTTCCAACG 360 consensus_5542#1 CTCCAGCCTTCGGAGATGCCTTTCGCGTTGGAACGGAGGAAACGTTTGATTTTTCTAACG 267 ******************************* *********************** **** consensus_5542#0 TAGTTCATGTGGGCAACGGTAAAAATGCAACTGTTCCATTTGGGTATCAAACACATGCAA 380 consensus_5542#2 TAGTTCATGTGGGCAACGGTAAAAATGCAACTGTTCCATTTGGGTATCAAACACATGCAA 420 consensus_5542#1 TAGTTCATGTGGGCAACGGTAAAAATGCAACTGTTCCATTTGGGTATCAAACACATGCAA 327 ************************************************************ consensus_5542#0 CGGTTATTGTGGGATCGGTGTGGGGCGATGATGAATCAAAGTTATTGAAAATTCAGGTGC 440 consensus_5542#2 CGGTTATTGTGGGATCGGTGTGGGGCGATGATGAATCAAAGTTATTGAAAATTCAGGTGC 480 consensus_5542#1 CGGTTATTGTGGGATCGGTGTGGGGCGATGATGAATCAAAGTTATTGAAAATTCAGGTGC 387 ************************************************************ consensus_5542#0 AAAATCCCTCGCTTGTTAGCATTCCAGATGGCAAAGTTGGAACGATGATTGGAGCAGAAT 500 consensus_5542#2 AAAATCCCTCGCTTGTTAGCATTCCAGATGGCAAAGTTGGAACGATGATTGGAGCAGAAT 540 consensus_5542#1 AAAATCCCTCGCTTGTTAGCATTCCAGATGGCAAAGTTGGAACGATGATTGGAGCAGAAT 447 ************************************************************ consensus_5542#0 CTCCGTTTTACGCGTGGTGGAATTTAGGGCAAATCAAAGAGGTTTATTTTGAAGCTTCAG 560 consensus_5542#2 CTCCGTTTTACGCGTGGTGGAATTTAGGGCAAATCAAAGAG------------------- 581 consensus_5542#1 CTCCGTTTTACGCGTGGTGGAATTTAGGGCAAATCAAAGAGGTTTATTTTGAAGCTTCAG 507 ***************************************** consensus_5542#0 ACGCACTACCGGTGAGAAACTTTAAGAAAGGAATATGTGCCCTGTTCCAGTATCAGCTG- 619 consensus_5542#2 ------------------------------------------------------------ consensus_5542#1 ACGCACTACCGGTGAGAAACTTTAAGAAAGGAATATGTGCCCTGTTCCAGTATCAGCTGC 567 consensus_5542#0 ---------------------------------------- consensus_5542#2 ---------------------------------------- consensus_5542#1 TAGATGGCACGTACAGTGAGGTGGATCCTTCTGGGGGAGT 607 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||