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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5553#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1487 fasta sequence
[CCGCGCAGCATTCGAATCAATTACAGCAGCAATCTCAACCCGTACAGCAGTCTCCGCTCGTACAGTCGGTGCGTCAGGCGCCACCGCAGCAGCAGCAGCAGCAGCAGCCGTACTACTACCCGGACCATCACTCTCATCAACCATCGCACCTGCATCACAACTTGCTGCACCATCATCGCGCTTCCATGCCGGCCATCGACAGCCGATCGTTGCAGAACGTCAACTCGTACGCTTCGTACGACGCGCCGTTTCTGGACGAGGTGGTAAACTCCGGCTACGAGATGGGCTCGCTGCATCGGGAATCGATGCCGAACCTGTCGAACGTGGCCGCCTCCTCTTCCCATCCCTCGTCGCTGTCATCGTACGGTGAGGAGTTTTCGGCCAACTCGGCCGCCAGCTTCGACGGATCCTGCTGGCCACCGGCTGTTGACCATCATCGGGGGCCGACGGGACACCCGGGTGCGGCATTGTTTGATAAACGTCCAGCGGTGGCTCCGCGGCCTGCAATGAACGGCTCACTGCCGCCCGGAGCTGCTGTGGGTGGTTATCACGGTGGTGGGTGGGTGGTGGGACAGCGAGTGTCCAACAGTATGTTTGAGCAACATCCCAAAGATAATAAACAAAATACACATCCATCAGCGATGGGGGTAAACCGTGGCCAGGGCGGCAGCAGCAGCAGCAGCAGTGGCGGTGGTGGTGGTGGTGGTGGAACTAATCACATGCCGTACGGGCAGCACTGGTTGGTGCAGGAGGCAGAGCAGAGGCGAATCGAGCAGCATCAAAAAAGCAGCACCAACAATGCCAAACGGCCGTTGCCAAAGTTTGTCATCGATGCAATTACCCAGCGGGTCCAAAAGCTAAACGCCGCCAGTCCGGAAAACTCGGACCGCAGCAATTTATCAGAGGACTCAGATCTGGCAATGATAAACTCGATGAAAAATCATCACCATCATCATGCGTCGATGCCTCCTCCGCCATCGTCCCATCATCATCATGCGCATCTTCCCCATCAGCAGCAACCGCCTGCACTACCAGCTCTTCCTCCACCGCAGCAGAAGTATTCCAACACGAGCGACAAAGTGTTGAGTGTGAGCGGAAAGAAGGAATGCTCCCATTGCCGAATAGAGCTGGGTAAGGGTGCGGCCATGGCCATCGAAAGCCTGGGATTGTTCTATCACATCGAATGCTTCAAGTGTTGCGTTTGTCACGTAAAGCTCGGGGACGGCACCAATGGTATAGATGTACGCGTTAGAAAGTATCGACTTCATTGCCAAAACTGTTTCTCTAGTGAAGACGGTGTAAAGTTTTTTGCGTTTAAGTACGCAGCGTCTGTCTGTGTGTGAGTGTGTATGTGTGTGTAAGCCACCGAAACAAATGGGTAACCGAAAAGTGGAAGTAGAGGCAGCAGAAGAAGATGTAAAAGAAAGCAACGATAATTTATTACTCCCTCCTCACATATTTCCTCACCCACGCTCCCCGTGGAAAAC]
[+] EMBL BM634510 [CCGCGCAGCATTCGAATCAATTACAGCAGCAATCTCAACCCGTACAGCAGTCTCCGCTCGTACAGTCGGTGCGTCAGGCGCCACCGCAGCAGCAGCAGCAGCAGCAGCCGTACTACTACCCGGACCATCACTCTCATCAACCATCGCACCTGCATCACAACTTGCTGCACCATCATCGCGCTTCCATGCCGGCCATCGACAGCCGATCGTTGCAGAACGTCAACTCGTACGCTTCGTACGACGCGCCGTTTCTGGACGAGGTGGTAAACTCCGGCTACGAGATGGGCTCGCTGCATCGGGAATCGATGCCGAACCTGTCGAACGTGGCCGCCTCCTCTTCCCATCCCTCGTCGCTGTCATCGTACGGTGAGGAGTTTTCGGCCAACTCGGCCGCCAGCTTCGACGGATCCTGCTGGCCACCGGCTGTTGACCATCATCGGGGGCCGACGGGACACCCGGGTGCGGCATTGTTTGATAAACGTCCAGCGGTGGCTCCGCGGCCTGCAATGAACGGCTCACTGCCGCCCGGAGCTGCTGTGGGTGGTTATCACGGTGGTGGGTGGGTGGTGGGACAGCGAGTGTCCAACAGTATGTTTGAGCAACATCCCAAAGATAATAAACAAAATACACATCCATCAGCGATGGGGGTAAACCGTGGCCAGG ]
[+] EMBL BM657408 [ ccgCTCGTCGCTGTCATCGTACGGTGAGGAGTTTTCGGCCAACTCGGCCGCCAGCTTCGACGGATCCTGCTGGCCACCGGCTGTTGACCATCATCGGGGGCCGACGGGACACCCGGGTGCGGCATTGTTTGATAAACGTCCAGCGGTGGCTCCGCGGCCTGCGATGAACGGCTCATTGCCGCCCGGAGCTGCTGTGGGTGGTTATCACGGTGGT GGT GGTGGT GGACAGCGAGTGTCCAACAGTATGTTTGAGCAACATCCCAAAGATAATAAACAAAATACACATCCATCAGCGATAGTGGTGAACCGTGGCCAGGGCGGCAGCAGCAGCAGCAGCAGTGGCGGTGGTGGTGGTGGTGGTGGAACTAATCACATGCCGTACGGGCAGCACTGGTTGGTGCAGGAGGCAGAGCAGAGGCGAATCGAGCAGCATCAAAAAAGCAGCACCAACAATGCCAAACGGCCGTTGCCAAAGTTTGTCATCGATGCAATTACCCAGCGGGTCCAAAAGCTAAACGCCGCCAGTCCGGAAAACTCGGACCGCAGCAATTTATCAGAGGACTCAGATCTGGCAATGATAAACTCGATGAAAAATCATCACCATCATCATGCGTCGATGCCTCCTCCGCCATCGTCCCATCATCAT ]
[+] EMBL BX609416 [ tttACGCCGCCAGTCCGGAAAACTCGGACCGCAGCAATTTATCAGAGGACTCGGATCTGGCAATGATAAACTCGATGAAAAATCATCACCATCATCATGCGTCGATGCCTCCTCCGCCATCGTCCCATCATCACCATGCGCATCTTCCCCATCAGCAGCAACCGCCTGCACTACCAGCTCTTCCTCCACCGCAGCAGAAGTATTCCAACACGAGCGACAAAGTGTTGAGTGTGAGCGGAAAGAAGGAATGCTCCCATTGCCGAATAGAGCTGGGTAAGGGTGCGGCCATGGCCATCGAAAGCCTGGGATTGTTCTATCACATCGAATGCTTCAAGTGTTGCGTTTGTCACGTAAAGCTCGGGGACGGCACCAATGGTATAGATGTACGCGTTAGAAAGTATCGACTTCATTGCCAAAACTGTTTCTCTAGTGAAGACGGTGTAAAGTTTTTTGCGTTTAAGTACGCAGCGTCTGTCTGTGTGTGAGTGTGTATGTGTGTGTAAGCCACCGAAACAAATGGGTAACCGAAAAGTGGAAGTAGAGGCAGCAGAAGAAGATGTAAAAGAAAGCAACGATAATTTATTACTCCCTCCTCACATATTTCCTCACCCACGCTCCCCGTGGAAAAC]
consensusID : consensus_5553#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 567 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGGAAGGAATGCTCCCATTGCCGAATAGAGCTGGGTAAGGGTGCGGCCATGGCCATCGAAAGCCTGGGATTGTTCTATCACATCGAATGCTTCAAGTGTTGCGTTTGTCACGTAAAGCTCGGGGACGGCACCAATGGTATAGATGTACGCGTTAGAAAGTATCGACTTCATTGCCAAAACTGTTTCTCTAGTGAAGACGGTGTAAAGTTTAGTTGCGTTTAAGTACGCAGCGTCTGTCTGTCTGTGTGTGAGTGTGTATGTGTGTGTGTAAGCCACCGAAACAAATGGGTAACCGAAAAGTGGAAGTAGATGCAGCAGAAGAAGAAGATGTAAAAGAAAGCAGCAATAATTTATTACTCCCTCCTCACATATTTCCTCACCCACGCTCCCCGTGGAAAACGCAGCTCGGCGCGTATTCCATCCCCCTCCACACAACCACACTAAAACAATTATATTTGTACGAAAAAGTTTAATGCTACGTTTATCACCTACTATTACTGATTACGATGATGATTATTATTGATTATATGTATATGATTCTA]
[+] EMBL BM581684 [CCGCCCACGCGTCCGCCCACGCGTCCGGAAGGAATGCTCCCATTGCCGAATAGAGCTGGGTAAGGGTGCGGCCATGGCCATCGAAAGCCTGGGATTGTTCTATCACATCGAATGCTTCAAGTGTTGCGTTTGTCACGTAAAGCTCGGGGACGGCACCAATGGTATAGATGTACGCGTTAGAAAGTATCGACTTCATTGCCAAAACTGTTTCTCTAGTGAAGACGGTGTAAAGTTTAGTTGCGTTTAAGTACGCAGCGTCTGTCTGTCTGTGTGTGAGTGTGTATGTGTGTGTGTAAGCCACCGAAACAAATGGGTAACCGAAAAGTGGAAGTAGATGCAGCAGAAGAAGAAGATGTAAAAGAAAGCAGCAATAATTTATTACTCCCTCCTCACATATTTCCTCACCCACGCTCCCCGTGGAAAACGCAGCTCGGCGCGTATTCCATCCCCCTCCACACAACCACACTAAAACAATTATATTTGTACGAAAAAGTTTAATGCTACGTTTATCACCTACTATTACTGATTACGATGATGATTATTATTGATTATATGTATATGATTCTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5553#0 CCGCGCAGCATTCGAATCAATTACAGCAGCAATCTCAACCCGTACAGCAGTCTCCGCTCG 60
consensus_5553#1 ------------------------------------------------------------
consensus_5553#0 TACAGTCGGTGCGTCAGGCGCCACCGCAGCAGCAGCAGCAGCAGCAGCCGTACTACTACC 120
consensus_5553#1 ------------------------------------------------------------
consensus_5553#0 CGGACCATCACTCTCATCAACCATCGCACCTGCATCACAACTTGCTGCACCATCATCGCG 180
consensus_5553#1 ------------------------------------------------------------
consensus_5553#0 CTTCCATGCCGGCCATCGACAGCCGATCGTTGCAGAACGTCAACTCGTACGCTTCGTACG 240
consensus_5553#1 ------------------------------------------------------------
consensus_5553#0 ACGCGCCGTTTCTGGACGAGGTGGTAAACTCCGGCTACGAGATGGGCTCGCTGCATCGGG 300
consensus_5553#1 ------------------------------------------------------------
consensus_5553#0 AATCGATGCCGAACCTGTCGAACGTGGCCGCCTCCTCTTCCCATCCCTCGTCGCTGTCAT 360
consensus_5553#1 ------------------------------------------------------------
consensus_5553#0 CGTACGGTGAGGAGTTTTCGGCCAACTCGGCCGCCAGCTTCGACGGATCCTGCTGGCCAC 420
consensus_5553#1 ------------------------------------------------------------
consensus_5553#0 CGGCTGTTGACCATCATCGGGGGCCGACGGGACACCCGGGTGCGGCATTGTTTGATAAAC 480
consensus_5553#1 ------------------------------------------------------------
consensus_5553#0 GTCCAGCGGTGGCTCCGCGGCCTGCAATGAACGGCTCACTGCCGCCCGGAGCTGCTGTGG 540
consensus_5553#1 ------------------------------------------------------------
consensus_5553#0 GTGGTTATCACGGTGGTGGGTGGGTGGTGGGACAGCGAGTGTCCAACAGTATGTTTGAGC 600
consensus_5553#1 ------------------------------------------------------------
consensus_5553#0 AACATCCCAAAGATAATAAACAAAATACACATCCATCAGCGATGGGGGTAAACCGTGGCC 660
consensus_5553#1 ------------------------------------------------------------
consensus_5553#0 AGGGCGGCAGCAGCAGCAGCAGCAGTGGCGGTGGTGGTGGTGGTGGTGGAACTAATCACA 720
consensus_5553#1 ------------------------------------------------------------
consensus_5553#0 TGCCGTACGGGCAGCACTGGTTGGTGCAGGAGGCAGAGCAGAGGCGAATCGAGCAGCATC 780
consensus_5553#1 ------------------------------------------------------------
consensus_5553#0 AAAAAAGCAGCACCAACAATGCCAAACGGCCGTTGCCAAAGTTTGTCATCGATGCAATTA 840
consensus_5553#1 ------------------------------------------------------------
consensus_5553#0 CCCAGCGGGTCCAAAAGCTAAACGCCGCCAGTCCGGAAAACTCGGACCGCAGCAATTTAT 900
consensus_5553#1 ------------------------------------------------------------
consensus_5553#0 CAGAGGACTCAGATCTGGCAATGATAAACTCGATGAAAAATCATCACCATCATCATGCGT 960
consensus_5553#1 ------------------------------------------------------------
consensus_5553#0 CGATGCCTCCTCCGCCATCGTCCCATCATCATCATGCGCATCTTCCCCATCAGCAGCAAC 1020
consensus_5553#1 ------------------------------------------------------------
consensus_5553#0 CGCCTGCACTACCAGCTCTTCCTCCACCGCAGCAGAAGTATTCCAACACGAGCGACAAAG 1080
consensus_5553#1 ---------------------------------------------------CCGCCCACG 9
** * * *
consensus_5553#0 TGTTGAGTGTGAGCGGAAAGAAGGAATGCTCCCATTGCCGAATAGAGCTGGGTAAGGGTG 1140
consensus_5553#1 CGTCC-GCCCACGCGTCCGGAAGGAATGCTCCCATTGCCGAATAGAGCTGGGTAAGGGTG 68
** * *** *****************************************
consensus_5553#0 CGGCCATGGCCATCGAAAGCCTGGGATTGTTCTATCACATCGAATGCTTCAAGTGTTGCG 1200
consensus_5553#1 CGGCCATGGCCATCGAAAGCCTGGGATTGTTCTATCACATCGAATGCTTCAAGTGTTGCG 128
************************************************************
consensus_5553#0 TTTGTCACGTAAAGCTCGGGGACGGCACCAATGGTATAGATGTACGCGTTAGAAAGTATC 1260
consensus_5553#1 TTTGTCACGTAAAGCTCGGGGACGGCACCAATGGTATAGATGTACGCGTTAGAAAGTATC 188
************************************************************
consensus_5553#0 GACTTCATTGCCAAAACTGTTTCTCTAGTGAAGACGGTGTAAAGTTTT-TTGCGTTTAAG 1319
consensus_5553#1 GACTTCATTGCCAAAACTGTTTCTCTAGTGAAGACGGTGTAAAGTTTAGTTGCGTTTAAG 248
*********************************************** ***********
consensus_5553#0 TACGCAGCGTCTGTCTGT----GTGTGAGTGTGTATGTGTGTGT--AAGCCACCGAAACA 1373
consensus_5553#1 TACGCAGCGTCTGTCTGTCTGTGTGTGAGTGTGTATGTGTGTGTGTAAGCCACCGAAACA 308
****************** ********************** **************
consensus_5553#0 AATGGGTAACCGAAAAGTGGAAGTAGAGGCAGCAGAAGAAGA---TGTAAAAGAAAGCAA 1430
consensus_5553#1 AATGGGTAACCGAAAAGTGGAAGTAGATGCAGCAGAAGAAGAAGATGTAAAAGAAAGCAG 368
*************************** ************** **************
consensus_5553#0 CGATAATTTATTACTCCCTCCTCACATATTTCCTCACCCACGCTCCCCGTGGAAAAC--- 1487
consensus_5553#1 CAATAATTTATTACTCCCTCCTCACATATTTCCTCACCCACGCTCCCCGTGGAAAACGCA 428
* *******************************************************
consensus_5553#0 ------------------------------------------------------------
consensus_5553#1 GCTCGGCGCGTATTCCATCCCCCTCCACACAACCACACTAAAACAATTATATTTGTACGA 488
consensus_5553#0 ------------------------------------------------------------
consensus_5553#1 AAAAGTTTAATGCTACGTTTATCACCTACTATTACTGATTACGATGATGATTATTATTGA 548
consensus_5553#0 -------------------
consensus_5553#1 TTATATGTATATGATTCTA 567
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||