These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5568#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 703 fasta sequence [AAAAAGAAAATAAAACAAATACAAAACAAAATTGAAACATAGTAATCAGAGGGTCGGAAAGGGAAGAAAGGCACTGCTAAAGGTAGTAGAGACACGTATAAATAATGCCAATCGTGCC-TTTTTTTATAATACATACACCCACATTCTTACCAGATGGCGAAACCACGAAAAAAGAGCAGTCATAATTAAGCAGCCAACGGATGAATGTTAAAAGCCTTGCTCTTTTCCCTTTTTTCAACTAATAATTTTTCGCAAACAATTGGCATATTAAATTGATTTTTAGAGTATCAAAATAAAATCTAAATTGTATGACTAATAGAGTGACGCAAAGTGAGTGATTAAAACGCGCGCGCAAAGCAAAAAACATCAAACGGCACACGACTGATTTGACACGAGCAAACGAAATCAAATTTGAATGTATATCAGTATTTTAAAGCGCGTCTAATACTATGGTGTTCGGCAAAACGAGGGAGCAAACAACAGGGAAGAAAGTGTAAGGAAAGAAAGGAGATAGATATTTAGACGTATTTTCAACTACATCACAAATTGTTCGTCAAAAATTTATAGTTTTTCTAATGAAAATTAAACCCATTTAAGTGTGTCCAATAGAAGAGGCAATGCTGGTGATGGCGAGGTGCGGTTGTGGTGGATATGATTTTGGGTTTATTTAGCAAAAACGGTTATGCAGCAAAACCGGGAAGAG] [+] EMBL BX627208 [AAAAAGAAAATAAAACAAATACAAAACAAAATTGAAACATATTAACCACAGGGTC ACGGAAGAAAGGCACTGCTAAAGGTAGTAGAGACACGTATAAATAATGCCAATCGTGCCTTTTTTTTATAATACATACACCCACATTCTTACCAGATGGCGAAACCACGAAAAAAGAGCAGTCATAATTTAGCAGCCAACGTTTGAATGTTAAAAGCCTTGCTCTTTTCCCTTTTTTCAACTAATAATTTTTCGCAAACAATTGGCATATTAAATTGATTTTTAGAGTATCAAAATAAAATCTAAATTGTATGACTAATAGAGTGACGCAAAGTGAGTGATTAAAACGCGCGCGCAAAGCAAAAAACATCAAACGGCACACGACTGATTTGACACGAGCAAACGAAATCAAATTTGAATGTATATCAGTATTTTAAAGCGCGTCTAATACTATGGTGTTCGGCAAAACGAGGGAGCAAACAACAGGGAAGAAAGTGTAAGGAAAGAAAGGAGATAGATATTTAGACGTATTTTCAACTACATCACAAATTGTTCGTCAAAAATTTATAGTTTTTCTAATGAAAATTAAACCCATTTAAGTGTGTCC ] [+] EMBL BM582962 [ ATACAAAACAAAATTGAAACATAGTAATCAGAGGGTCGGAAAGGGAAGAAAGGCACTGCTAAAGGTAGTAGAGACACGTATAAATAATGCCAATCGTGCC TTTTTTTATAATACATACACCCACATTCTTACCAGATGGCGAAACCACGAAAAAAGAGCAGTCATAATTAAGCAGCCAACGGATGAATGTTAAAAGCCTTGCCCTTTTCCCTTTTTTCAACTAATAATTTTTCGCAAACAATTGGCATATTAAATTGATTTTTAGAGTATCAAAATAAAATCTAAATTGTATGACTAATAGAGTGACGCAAAGT GTGATTCAAACGCGCGCGCAAAGCAAAAAACATCAAACGGCACACGACTGATTTGACACGAGCAAACGAAATCAAATTTGAATGTATATCAGTATTTTAAAGCGCGTCTAATACTATGGTGTTCGGCAAAACGAGGGAGCAAACAACAGGGAAGAAAGTGTAAGGAAAGAAAGGAGATAGATGTTTAGACATATTTTCAACTACATCACAAATTGTTCGTCAAAAATTTATAGTTTTTCTAATGAAAATTAAAACCATTTAAGTTTGTCGAATAGAAGAGGCAATGCTGGTGATGGCGAGGTGCGGTTGTGGTGGATATGATTTTGGGTTTATTTAGCAAAAACGGTTATGCAGCAAAACCGGGAAGAG] [+] EMBL BM582965 [ ATACAAAACAAAATTGAAACATAGTAATCAGAGGGTCGGAAAGGGAAGAAAGGCACTGCTAAAGGTAGTAGAGACACGTATAAATAATGCCAATCGTGCC TTTTTTTATAATACATACACCCACATTCTTACCAGATGGCGAAACCACGAAAAAAGAGCAGTCATAATTAAGCAGCCAACGGATGAATGT ] consensusID : consensus_5568#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 649 fasta sequence [CGGACAGAATTGCGAACAGCGAGCGAGCGAGCGAGCGAGCGAGCGTGTGTATTTTGAAACTCGTGTTCTCCGTGTACAGCAAAGCAAAAAAACATCAAACGGCACACGACTGATTTGACACGAGCAAACGAAATCAAATTTGAATGTATATCAGTATTTTAAAGCGCGTCTAATACTATGGTGTTCGGCAAAACGAGGGAGCAAACAACAGGGAAGAAAGTGTAAGGAAAGAAAGGAGATAGATGTTTAGACATATTTTCAACTACATCACAAATTGTTCGTCAAAAATTTATAGTTTTTCTAATGAAAATTAAAACCATTTAAGTTTGTCGAATAGAAGAGGCAATGCTGGTGATGGCGAGGTGCGGTTGTGGTGGATATGATTTTGGGTTTATTTAGCAAAAACGGTTATGCAGCAAACCGGGAAGAGTAGAGACCACCGCTCCTCCAGCAACACTTAAAATTGTCACACTGTCACACTATTACAATCGTTTTTAGTGGTAAACAGGCGAATAGTATGACCCCCGGACCCGTTGAAGGTCGTGCATAGTANGGTATAGCCGGAATAGAGGTAGTTAGTTGTATTATTGTACATTGGTTATTANGCTCCTCTGGTCGATTCGTTATTTTACCCACTAACCGTACACAG] [+] EMBL BX624672 [CGGACAGAATTGCGAACAGCGAGCGAGCGAGCGAGCGAGCGAGCGTGTGTATTTTGAAACTCGTGTTCTCCGTGTACAGCAAAGCAAAAAAACATCAAACGGCACACGACTGATTTGACACGAGCAAACGAAATCAAATTTGAATGTATATCAGTATTTTAAAGCGCGTCTAATACTATGGTGTTCGGCAAAACGAGGGAGCAAACAACAGGGAAGAAAGTGTAAGGAAAGAAAGGAGATAGATGTTTAGACATATTTTCAACTACATCACAAATTGTTCGTCAAAAATTTATAGTTTTTCTAATGAAAATTAAAACCATTTAAGTTTGTCGAATAGAAGAGGCAATGCTGGTGATGGCGAGGTGCGGTTGTGGTGGATATGATTTTGGGTTTATTTAGCAAAAACGGTTATGCAGCAAACCGGGAAGAGTAGAGACCACCGCTCCTCCAGCAACACTTAAAATTGTCACACTGTCACACTATTACAATCGTTTTTAGTGGTAAACAGGCGAATAGTATGACCCCCGGACCCGTTGAAGGTCGTGCATAGTANGGTATAGCCGGAATAGAGGTAGTTAGTTGTATTATTGTACATTGGTTATTANGCTCCTCTGGTCGATTCGTTATTTTACCCACTAACCGTACACAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5568#0 AAAAAGAAAATAAAACAAATACAAAACAAAATTGAAACATAGTAATCAGAGGGTCGGAAA 60 consensus_5568#1 ------------------------------------------------------------ consensus_5568#0 GGGAAGAAAGGCACTGCTAAAGGTAGTAGAGACACGTATAAATAATGCCAATCGTGCCTT 120 consensus_5568#1 ------------------------------------------------------------ consensus_5568#0 TTTTTATAATACATACACCCACATTCTTACCAGATGGCGAAACCACGAAAAAAGAGCAGT 180 consensus_5568#1 ------------------------------------------------------------ consensus_5568#0 CATAATTAAGCAGCCAACGGATGAATGTTAAAAGCCTTGCTCTTTTCCCTTTTTTCAACT 240 consensus_5568#1 ------------------------------------------------------------ consensus_5568#0 AATAATTTTTCGCAAACAATTGGCATATTAAATTGATTTTTAGAGTATCAAAATAAAATC 300 consensus_5568#1 ----------------------------CGGACAGAATTGC-GAACAGCGAGCGAGCGAG 31 * ** ** ** * * * * consensus_5568#0 TAAATTGTATGACTAATAGAGTGACGCAAAGTGAGTGATTAAAACGCGCGCGCAAAGCAA 360 consensus_5568#1 CGAGC-GAGCGAGCGT--GTGTATTTTGAAACTCGTGTTCTCCGTGTACA-GCAAAGCAA 87 * * ** * ** ** *** * * * ********* consensus_5568#0 AAAA-CATCAAACGGCACACGACTGATTTGACACGAGCAAACGAAATCAAATTTGAATGT 419 consensus_5568#1 AAAAACATCAAACGGCACACGACTGATTTGACACGAGCAAACGAAATCAAATTTGAATGT 147 **** ******************************************************* consensus_5568#0 ATATCAGTATTTTAAAGCGCGTCTAATACTATGGTGTTCGGCAAAACGAGGGAGCAAACA 479 consensus_5568#1 ATATCAGTATTTTAAAGCGCGTCTAATACTATGGTGTTCGGCAAAACGAGGGAGCAAACA 207 ************************************************************ consensus_5568#0 ACAGGGAAGAAAGTGTAAGGAAAGAAAGGAGATAGATATTTAGACGTATTTTCAACTACA 539 consensus_5568#1 ACAGGGAAGAAAGTGTAAGGAAAGAAAGGAGATAGATGTTTAGACATATTTTCAACTACA 267 ************************************* ******* ************** consensus_5568#0 TCACAAATTGTTCGTCAAAAATTTATAGTTTTTCTAATGAAAATTAAACCCATTTAAGTG 599 consensus_5568#1 TCACAAATTGTTCGTCAAAAATTTATAGTTTTTCTAATGAAAATTAAAACCATTTAAGTT 327 ************************************************ ********** consensus_5568#0 TGTCCAATAGAAGAGGCAATGCTGGTGATGGCGAGGTGCGGTTGTGGTGGATATGATTTT 659 consensus_5568#1 TGTCGAATAGAAGAGGCAATGCTGGTGATGGCGAGGTGCGGTTGTGGTGGATATGATTTT 387 **** ******************************************************* consensus_5568#0 GGGTTTATTTAGCAAAAACGGTTATGCAGCAAAACCGGGAAGAG---------------- 703 consensus_5568#1 GGGTTTATTTAGCAAAAACGGTTATGCAGCAAA-CCGGGAAGAGTAGAGACCACCGCTCC 446 ********************************* ********** consensus_5568#0 ------------------------------------------------------------ consensus_5568#1 TCCAGCAACACTTAAAATTGTCACACTGTCACACTATTACAATCGTTTTTAGTGGTAAAC 506 consensus_5568#0 ------------------------------------------------------------ consensus_5568#1 AGGCGAATAGTATGACCCCCGGACCCGTTGAAGGTCGTGCATAGTANGGTATAGCCGGAA 566 consensus_5568#0 ------------------------------------------------------------ consensus_5568#1 TAGAGGTAGTTAGTTGTATTATTGTACATTGGTTATTANGCTCCTCTGGTCGATTCGTTA 626 consensus_5568#0 ----------------------- consensus_5568#1 TTTTACCCACTAACCGTACACAG 649 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||