cluster # 5576

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Anopheles gambiae
cluster # 5576 cluster # 5576 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5576#0 length = 690 sequences # 3

consensus_5576#1 length = 470 sequences # 1

consensusID : consensus_5576#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 690
fasta sequence

                              [AATCGCCACGAGGTGAGAAACGGGAAGGAAAAATAAAACTCGCTCGCTGCTCTGACGCCCGCCGCGCTTTGTGTCGTGCTCAGCAAAGTTTTGCCAAATTTTCGTGCCCTTTCGCGTGCTAACGGTTTGAAAAATGTTCAAAAACACTTTTCAGTCCGGTTTCCTCTCGATACTGTACAGCATAGGCAGCAAGCCGCTCCAAATTTGGGATAAAAAGGTTCGCAATGGACACATCAAGCGCATCACGGACCAGGACATACAGTCGTTGGTGCTGGAAATCATTGGCACCAACGTGAGCACCACGTACATCACCTGTCCGGCCGATCCGAAAAAGACGCTCGGCATCAAGCTTCCCTTCCTGGTGATGATAATAAAGAATCTAAAGAAGTACTTCACGTTCGAGGTGCAGGTATTGGACGATAAAAACGTTCGCCGCCGGTTTCGTGCCAGCAACTATCAGTCGACGACGCGCGTTAAACCCTTCATCTGTACCATGCCGAT-GCGGTTGGACGAGGGCTGGAATCAAATCCAGTTCAATCTGTCTGATTTTACCCGCCGCGCCTACGGTACCAACTACGTGGAAACGTTGCGCGTGCAGATACACGCCAACTGCCGAATACGCCGCGTGTACTTCTCCGACCGGCTGTACTCGGAGGATGAGCTGCCAGCGGAATTCAAACTGTTCCTGCC]

[+] EMBL BX466251             [AATCGCCACGAGGTGAGAAACGGGAAGGAAAAATAAAACTCGCTCGCTGCTCTGACGCCCGCCGCGCTTTGTGTCGTGCTCAGCAAAGTTTTGCCAAATTTTCGTGCCCTTTCGCGTGCTAACGGTTTGAAAAATGTTCAAAAACACTTTTCAGTCCGGTTTCCTCTCGATACTGTACAGCATAGGCAGCAAGCCGCTCCAAATTTGGGATAAAAAGGTTCGCAATGGACACATCAAGCGCATCACGGACCAGGACATACAGTCGTTGGTCCTGGAAATCATTGGCACCAACGTGAGCACCACGTACATCACCTGTCCGGCCGATCCGAAGAAGACGCTCGGCATCAAGCTTCCCTTCCTGGTGATGATAATAAAGAATCTAAAGAAGTACTTCACGTTCGAGGTGCAGGTATTGGACGATAAAAACGTTCGCCGCCGGTTTCGTGCCAGCAACTATCAGTCGACGACGCGCGTTAAACCCTTCATCTGCACCATGCCGATAGCGGTTGGACGAGGGCTGGAATCAGATCCAGTTCAATCTGTCCGATTTTACCCGGCGGGCCTACGGTAACAACTACGTG                                                                                                              ]
[+] EMBL BM583610             [                                   ccgCTCGCTCGCTGCTCTGACGCCCGCCGCGCTTTGTGTCGTGCTCAGCAAAGTTTTGCCAAATTTTCGTGCCCTTTCGCGTGCTAACGGTTTGAAAAATGTTCAAAAACACTTTTCAGTCCGGTTTCCTCTCGATACTGTACAGCATAGGCAGCAAGCCGCTCCAAATTTGGGATAAAAAGGTTCGCAATGGACACATCAAGCGCATCACGGACCAGGACATACAGTCGTTGGTGCTGGAAATCATTGGCACCAACGTGAGCACCACGTACATCACCTGTCCGGCCGATCCGAAAAAGACGCTCGGCATCAAGCTTCCCTTCCTGGTGATGATAATAAAGAATCTAAAGAAGTACTTCACGTTCGAGGTGCAGGTATTGGACGATAAAAACGTTCGCCGCCGGTTTCGTGCCAGCAACTATCAGTCGACGACGCGCGTTAAACCCTTCATCTGTACCATGCCGAT GCGGTTGGACGAGGGCTGGAATCAAATCCAGTTCAATCTGTCTGATTTTACCCGCCGCGCCTACGGTACCAACTACGTGGAAACGTTGCGCGTGCAGATACACGCCAACTGCCGAATACGCCGCGTGTACTTCTCCGACCGGCTGTACTCGGAGGATGAGCTGCCAGCGGAATTCAAACTGTTCCTGCC]
[+] EMBL BM612113             [                                         ccgCGCTGCTCTGACGCCCGCCGCGCTTTGTGTCGTGCTCAGCAAAGTTTTGCCAAATTTTCGTGCCCTTTCGCGTGCTAACGGTTTGAAAAATGTTCAAAAACACTTTTCAGTCCGGTTTCCTCTCGATACTGTACAGCATAGGCAGCAAGCCGCTCCAAATTTGGGATAAAAAGGTTCGCAATGGACACATCAAGCGCATCACGGACCAGGACATACAGTCGTTGGTGCTGGAAATCATTGGCACCAACGTGAGCACCACGTACATCACCTGTCCGGCCGATCCGAAAAAGACGCTCGGCATCAAGCTTCCCTTCCTGGTGATGATAATAAAGAATCTAAAGAAGTACTTCACGTTCGAGGTGCAGGTATTGGACGATAAAAACGTTCGCCGCCGGTTTCGTGCCAGCAACTATCAGTCGACGACGCGCGTTAAACCCTTCATCTGTACCATGCCGAT GCGGTTGGACGAGGGCTGGAATCAAATCCAGTTCAATCTGTCTGATTTTACCCGCCGCGCCTACGGTACCAACTACGTGGAAA                                                                                                          ]




>consensus_5576#0
AATCGCCACGAGGTGAGAAACGGGAAGGAAAAATAAAACTCGCTCGCTGCTCTGACGCCC
GCCGCGCTTTGTGTCGTGCTCAGCAAAGTTTTGCCAAATTTTCGTGCCCTTTCGCGTGCT
AACGGTTTGAAAAATGTTCAAAAACACTTTTCAGTCCGGTTTCCTCTCGATACTGTACAG
CATAGGCAGCAAGCCGCTCCAAATTTGGGATAAAAAGGTTCGCAATGGACACATCAAGCG
CATCACGGACCAGGACATACAGTCGTTGGTGCTGGAAATCATTGGCACCAACGTGAGCAC
CACGTACATCACCTGTCCGGCCGATCCGAAAAAGACGCTCGGCATCAAGCTTCCCTTCCT
GGTGATGATAATAAAGAATCTAAAGAAGTACTTCACGTTCGAGGTGCAGGTATTGGACGA
TAAAAACGTTCGCCGCCGGTTTCGTGCCAGCAACTATCAGTCGACGACGCGCGTTAAACC
CTTCATCTGTACCATGCCGATGCGGTTGGACGAGGGCTGGAATCAAATCCAGTTCAATCT
GTCTGATTTTACCCGCCGCGCCTACGGTACCAACTACGTGGAAACGTTGCGCGTGCAGAT
ACACGCCAACTGCCGAATACGCCGCGTGTACTTCTCCGACCGGCTGTACTCGGAGGATGA
GCTGCCAGCGGAATTCAAACTGTTCCTGCC

consensusID : consensus_5576#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 470
fasta sequence

                              [AGGCCAAGAACTCNCCGGCACTGAGGGTTGGTGCTTGGAAATCATTGGCACAACGTGAGCACCACGTACATCACCTGTCCGGCCGATCCGAAGAAGACGCTCGGCATCAAGCTTCCCTTCCTGGTGATGATAATAAAGAATCTAAAGAAGTACTTCACGTTCGAGGTGCAGGTATTTGGACGATAAAAACGTTCGCCGCCGGTTTCGTGCCAGCAACTATCAGTCGACGACGCGCGTTAAACCCTTCATCTGTACCATGCCGATGCGGTTGGACGAGGGCTGGAATCAGATCCAGTTCAATCTGTCTGATTTTACCCGCCGCGCCTACGGTACCAACTACGTGGAAACGTTGCGCGTGCAGATACACGCCAACTGCCGAATACGCCGCGTGTACTTCTCCGACCGGCTGTACTCGGAGGATGAGCTGCCAGCGGAATTCAAACTGTTCCTGCCGATACAGAAGCCACAGT]

[+] EMBL BX468495             [AGGCCAAGAACTCNCCGGCACTGAGGGTTGGTGCTTGGAAATCATTGGCACAACGTGAGCACCACGTACATCACCTGTCCGGCCGATCCGAAGAAGACGCTCGGCATCAAGCTTCCCTTCCTGGTGATGATAATAAAGAATCTAAAGAAGTACTTCACGTTCGAGGTGCAGGTATTTGGACGATAAAAACGTTCGCCGCCGGTTTCGTGCCAGCAACTATCAGTCGACGACGCGCGTTAAACCCTTCATCTGTACCATGCCGATGCGGTTGGACGAGGGCTGGAATCAGATCCAGTTCAATCTGTCTGATTTTACCCGCCGCGCCTACGGTACCAACTACGTGGAAACGTTGCGCGTGCAGATACACGCCAACTGCCGAATACGCCGCGTGTACTTCTCCGACCGGCTGTACTCGGAGGATGAGCTGCCAGCGGAATTCAAACTGTTCCTGCCGATACAGAAGCCACAGT]




>consensus_5576#1
AGGCCAAGAACTCNCCGGCACTGAGGGTTGGTGCTTGGAAATCATTGGCACAACGTGAGC
ACCACGTACATCACCTGTCCGGCCGATCCGAAGAAGACGCTCGGCATCAAGCTTCCCTTC
CTGGTGATGATAATAAAGAATCTAAAGAAGTACTTCACGTTCGAGGTGCAGGTATTTGGA
CGATAAAAACGTTCGCCGCCGGTTTCGTGCCAGCAACTATCAGTCGACGACGCGCGTTAA
ACCCTTCATCTGTACCATGCCGATGCGGTTGGACGAGGGCTGGAATCAGATCCAGTTCAA
TCTGTCTGATTTTACCCGCCGCGCCTACGGTACCAACTACGTGGAAACGTTGCGCGTGCA
GATACACGCCAACTGCCGAATACGCCGCGTGTACTTCTCCGACCGGCTGTACTCGGAGGA
TGAGCTGCCAGCGGAATTCAAACTGTTCCTGCCGATACAGAAGCCACAGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5576#0      AATCGCCACGAGGTGAGAAACGGGAAGGAAAAATAAAACTCGCTCGCTGCTCTGACGCCC 60
consensus_5576#1      ------------------------------------------------------------
                                                                                  

consensus_5576#0      GCCGCGCTTTGTGTCGTGCTCAGCAAAGTTTTGCCAAATTTTCGTGCCCTTTCGCGTGCT 120
consensus_5576#1      ------------------------------------------------------------
                                                                                  

consensus_5576#0      AACGGTTTGAAAAATGTTCAAAAACACTTTTCAGTCCGGTTTCCTCTCGATACTGTACAG 180
consensus_5576#1      ------------------------------------------------------------
                                                                                  

consensus_5576#0      CATAGGCAGCAAGCCGCTCCAAATTTGGGATAAAAAGGTTCGCAATGGACACATCAAGCG 240
consensus_5576#1      -------------------------------------------------------AGGCC 5
                                                                             * ** 

consensus_5576#0      CATCACGGACCAGGACATACAGTCGTTGGTGCTGGAAATCATTGGCACCAACGTGAGCAC 300
consensus_5576#1      AAGAACTCNCCGGCACTGAGGGTTGGTGCT--TGGAAATCATTGGCAC-AACGTGAGCAC 62
                       *  **   ** * **  *  ** * ** *  **************** ***********

consensus_5576#0      CACGTACATCACCTGTCCGGCCGATCCGAAAAAGACGCTCGGCATCAAGCTTCCCTTCCT 360
consensus_5576#1      CACGTACATCACCTGTCCGGCCGATCCGAAGAAGACGCTCGGCATCAAGCTTCCCTTCCT 122
                      ****************************** *****************************

consensus_5576#0      GGTGATGATAATAAAGAATCTAAAGAAGTACTTCACGTTCGAGGTGCAGGTATT-GGACG 419
consensus_5576#1      GGTGATGATAATAAAGAATCTAAAGAAGTACTTCACGTTCGAGGTGCAGGTATTTGGACG 182
                      ****************************************************** *****

consensus_5576#0      ATAAAAACGTTCGCCGCCGGTTTCGTGCCAGCAACTATCAGTCGACGACGCGCGTTAAAC 479
consensus_5576#1      ATAAAAACGTTCGCCGCCGGTTTCGTGCCAGCAACTATCAGTCGACGACGCGCGTTAAAC 242
                      ************************************************************

consensus_5576#0      CCTTCATCTGTACCATGCCGATGCGGTTGGACGAGGGCTGGAATCAAATCCAGTTCAATC 539
consensus_5576#1      CCTTCATCTGTACCATGCCGATGCGGTTGGACGAGGGCTGGAATCAGATCCAGTTCAATC 302
                      ********************************************** *************

consensus_5576#0      TGTCTGATTTTACCCGCCGCGCCTACGGTACCAACTACGTGGAAACGTTGCGCGTGCAGA 599
consensus_5576#1      TGTCTGATTTTACCCGCCGCGCCTACGGTACCAACTACGTGGAAACGTTGCGCGTGCAGA 362
                      ************************************************************

consensus_5576#0      TACACGCCAACTGCCGAATACGCCGCGTGTACTTCTCCGACCGGCTGTACTCGGAGGATG 659
consensus_5576#1      TACACGCCAACTGCCGAATACGCCGCGTGTACTTCTCCGACCGGCTGTACTCGGAGGATG 422
                      ************************************************************

consensus_5576#0      AGCTGCCAGCGGAATTCAAACTGTTCCTGCC----------------- 690
consensus_5576#1      AGCTGCCAGCGGAATTCAAACTGTTCCTGCCGATACAGAAGCCACAGT 470
                      *******************************